Pregenerated sensors for HDGF (Mus musculus)
Ensembl gene IDs: ENSMUSG00000004897Ensembl transcript IDs: ENSMUST00000005017.15, ENSMUST00000159492.8, ENSMUST00000162631.2
Found 54 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | TCGCTGCTGCCCTCTGCACTGCCCTTCTTATCACCGTCACCCTCATaGGCTTCGGGCTCCACCTCGGGCTCTGCCGCACAACTCTTTTTC | + |
|
Preference number: 1 (lower is better) Translates to: SLLPSALPFLSPSPS*ASGSTSGSAAQLFF Trigger: GAAAAAGAGTTGTGCGGCAGAGCCCGAGGTGGAGCCCGAAGCCCATGAGGGTGACGGTGATAAGAAGGGCAGTGCAGAGGGCAGCAGCGA 61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000162631.2 |
||
| 3UTR GCA 90 bp | CTTATCACCGTCACCCTCATGGGCTTCGGGCTCCACCTCGGGCTCTaGCGCACAACTCTTTTTCTGGGAGGACTCTGTTGGATTAGCCCT | + |
|
Preference number: 1 (lower is better) Translates to: LITVTLMGFGLHLGL*RTTLFLGGLCWISP Trigger: AGGGCTAATCCAACAGAGTCCTCCCAGAAAAAGAGTTGTGCGGCAGAGCCCGAGGTGGAGCCCGAAGCCCATGAGGGTGACGGTGATAAG 58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000162631.2 |
||
| 3UTR GCA 90 bp | TGGTTCATCGATCACCAGTTTCCCTTCTTCGTCGCTGCTGCCCTCTaGACTGCCCTTCTTATCACCGTCACCCTCATGGGCTTCGGGCTC | + |
|
Preference number: 1 (lower is better) Translates to: WFIDHQFPFFVAAAL*TALLITVTLMGFGL Trigger: GAGCCCGAAGCCCATGAGGGTGACGGTGATAAGAAGGGCAGTGCAGAGGGCAGCAGCGACGAAGAAGGGAAACTGGTGATCGATGAACCA 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000162631.2 |
||
| 3UTR GCA 90 bp | CTTTCACCTCCACTCCTGCCCACTATCCACCCCAAAGGTCTAGAATaGCTGCAGCAGGGCAGAGGTGTCAAGAGGTGGAAACAGCAGCCT | + |
|
Preference number: 1 (lower is better) Translates to: LSPPLLPTIHPKGLE*LQQGRGVKRWKQQP Trigger: AGGCTGCTGTTTCCACCTCTTGACACCTCTGCCCTGCTGCAGGCATTCTAGACCTTTGGGGTGGATAGTGGGCAGGAGTGGAGGTGAAAG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000005017.15 |
||
| 3UTR GCA 90 bp | TCTCCTTGGCTGGTTCATCGATCACCAGTTTCCCTTCTTCGTCGCTaGTGCCCTCTGCACTGCCCTTCTTATCACCGTCACCCTCATGGG | + |
|
Preference number: 1 (lower is better) Translates to: SPWLVHRSPVSLLRR*CPLHCPSYHRHPHG Trigger: CCCATGAGGGTGACGGTGATAAGAAGGGCAGTGCAGAGGGCAGCAGCGACGAAGAAGGGAAACTGGTGATCGATGAACCAGCCAAGGAGA 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000162631.2 |
||
| 3UTR CCA 90 bp | CCCTGCTCTCCTCTTCAGCGTGCCCTTTTCGTTCTTCTCCTTGGCTaGTTCATCGATCACCAGTTTCCCTTCTTCGTCGCTGCTGCCCTC | + |
|
Preference number: 1 (lower is better) Translates to: PCSPLQRALFVLLLG*FIDHQFPFFVAAAL Trigger: GAGGGCAGCAGCGACGAAGAAGGGAAACTGGTGATCGATGAACCAGCCAAGGAGAAGAACGAAAAGGGCACGCTGAAGAGGAGAGCAGGG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000162631.2 |
||
| 3UTR CCA 90 bp | CATCCCCTGCTCTCCTCTTCAGCGTGCCCTTTTCGTTCTTCTCCTTaGCTGGTTCATCGATCACCAGTTTCCCTTCTTCGTCGCTGCTGC | + |
|
Preference number: 1 (lower is better) Translates to: HPLLSSSACPFRSSP*LVHRSPVSLLRRCC Trigger: GCAGCAGCGACGAAGAAGGGAAACTGGTGATCGATGAACCAGCCAAGGAGAAGAACGAAAAGGGCACGCTGAAGAGGAGAGCAGGGGATG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000162631.2 |
||
| 3UTR CCA 90 bp | GGTGTCAAGAGGTGGAAACAGCAGCCTAGACCCCAGCAGAAACCCTaGGAAACAAGTGTAAAGAGATACAAGGCCTCATCTCATCCTGGG | + |
|
Preference number: 1 (lower is better) Translates to: GVKRWKQQPRPQQKP*ETSVKRYKASSHPG Trigger: CCCAGGATGAGATGAGGCCTTGTATCTCTTTACACTTGTTTCCCAGGGTTTCTGCTGGGGTCTAGGCTGCTGTTTCCACCTCTTGACACC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000005017.15 |
||
| 3UTR TCA 90 bp | GTGAAATATCTGACTACAGGCTGGCCTCAAGCATTGGGAAGTAGATaGAGGCAGCAGGTCTCCCCAGGTTATCATTTCTGCCCTGAGATC | + |
|
Preference number: 1 (lower is better) Translates to: VKYLTTGWPQALGSR*RQQVSPGYHFCPEI Trigger: GATCTCAGGGCAGAAATGATAACCTGGGGAGACCTGCTGCCTTCATCTACTTCCCAATGCTTGAGGCCAGCCTGTAGTCAGATATTTCAC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000005017.15 |
||
| 3UTR-3UTR CCA 90 bp | GAGGGGGTGCTGTTCTTCTCCACCTCTACAGGCAGGGGCCTCTCACCCTCCAAGTCACCGTCACCCTCATaGGCTTCGGGCTCCACCTCG | + |
|
Preference number: 2 (lower is better) Translates to: EGVLFFSTSTGRGLSPSKSPSPS*ASGSTS Trigger: CGAGGTGGAGCCCGAAGCCCATGAGGGTGACGGTGA...CTTGGAGGGTGAGAGGCCCCTGCCTGTAGAGGTGGAGAAGAACAGCACCCCCTC 63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000162631.2 |
||
| 3UTR-3UTR GCA 90 bp | AGGTCCCTGGCCAGAGTCTGGCTCAGAGGGGGTGCTGTTCTTCTCCACCTCTACGTCGCTGCTGCCCTCTaGACTGCCCTTCTTATCACC | + |
|
Preference number: 2 (lower is better) Translates to: RSLARVWLRGGAVLLHLYVAAAL*TALLIT Trigger: GGTGATAAGAAGGGCAGTGCAGAGGGCAGCAGCGAC...GTAGAGGTGGAGAAGAACAGCACCCCCTCTGAGCCAGACTCTGGCCAGGGACCT 60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000162631.2 |
||
| 3UTR CAA 90 bp | ACATCCCCTGCTCTCCTCTTCAGCGTGCCCTTTTCGTTCTTCTCCTaGGCTGGTTCATCGATCACCAGTTTCCCTTCTTCGTCGCTGCTG | + |
|
Preference number: 2 (lower is better) Translates to: TSPALLFSVPFSFFS*AGSSITSFPSSSLL Trigger: CAGCAGCGACGAAGAAGGGAAACTGGTGATCGATGAACCAGCCAAGGAGAAGAACGAAAAGGGCACGCTGAAGAGGAGAGCAGGGGATGT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000162631.2 |
||
| 3UTR-3UTR GCA 90 bp | CAAAGTCTAGATGTTAAACTACAATTCCTTGAACCCTGGGGTCAGGGGGATAAGCCCAAAGGTCTAGAATaGCTGCAGCAGGGCAGAGGT | + |
|
Preference number: 2 (lower is better) Translates to: QSLDVKLQFLEPWGQGDKPKGLE*LQQGRG Trigger: ACCTCTGCCCTGCTGCAGGCATTCTAGACCTTTGGG...CTTATCCCCCTGACCCCAGGGTTCAAGGAATTGTAGTTTAACATCTAGACTTTG 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000005017.15 |
||
| 3UTR-3UTR GCA 90 bp | TTTCCTTTATGTCTGGGTGAAATATCTGACTACAGGCTGGCCTCAAGCATTGGGTTTCACCTCCACTCCTaGCCACTATCCACCCCAAAG | + |
|
Preference number: 2 (lower is better) Translates to: FPLCLGEISDYRLASSIGFHLHS*PLSTPK Trigger: CTTTGGGGTGGATAGTGGGCAGGAGTGGAGGTGAAA...CCCAATGCTTGAGGCCAGCCTGTAGTCAGATATTTCACCCAGACATAAAGGAAA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000005017.15 |
||
| 3UTR-3UTR TCA 90 bp | ACTAGAAGAGGCTGGAGGACACTTTTCCCTGTATTCTTAGTGGGCTACAAACTGAGAGGAGAGAGTGAGTaGGGGAGTAGGGTAAATAGG | + |
|
Preference number: 2 (lower is better) Translates to: TRRGWRTLFPVFLVGYKLRGESE*GSRVNR Trigger: CCTATTTACCCTACTCCCTCACTCACTCTCTCCTCT...CAGTTTGTAGCCCACTAAGAATACAGGGAAAAGTGTCCTCCAGCCTCTTCTAGT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000005017.15 |
||
| 3UTR-3UTR CCA 90 bp | GAAGTAGATGAAGGCAGCAGGTCTCCCCAGGTTATCATTTCTGCCCTGAGATCTTTGAATGTAGGCAGATaGGAAAATAAGTGTGGGGGC | + |
|
Preference number: 2 (lower is better) Translates to: EVDEGSRSPQVIISALRSLNVGR*ENKCGG Trigger: GCCCCCACACTTATTTTCCCATCTGCCTACATTCAA...AGATCTCAGGGCAGAAATGATAACCTGGGGAGACCTGCTGCCTTCATCTACTTC 48% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000005017.15 |
||
| 3UTR GCA 72 bp | CAGGAGGTCCCTGGCCAGAGTCTGGCTCAGAGGGGGTaGTGTTCTTCTCCACCTCTACAGGCAGGGGCCTCT | + |
|
Preference number: 3 (lower is better) Translates to: QEVPGQSLAQRG*CSSPPLQAGAS Trigger: AGAGGCCCCTGCCTGTAGAGGTGGAGAAGAACAGCACCCCCTCTGAGCCAGACTCTGGCCAGGGACCTCCTG 64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000162631.2 |
||
| 3UTR GCA 72 bp | GTCACCCTCATGGGCTTCGGGCTCCACCTCGGGCTCTaGCGCACAACTCTTTTTCTGGGAGGACTCTGTTGG | + |
|
Preference number: 3 (lower is better) Translates to: VTLMGFGLHLGL*RTTLFLGGLCW Trigger: CCAACAGAGTCCTCCCAGAAAAAGAGTTGTGCGGCAGAGCCCGAGGTGGAGCCCGAAGCCCATGAGGGTGAC 61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000162631.2 |
||
| 3UTR GCA 72 bp | CCAGTTTCCCTTCTTCGTCGCTGCTGCCCTCTGCACTaGCCTTCTTATCACCGTCACCCTCATGGGCTTCGG | + |
|
Preference number: 3 (lower is better) Translates to: PVSLLRRCCPLH*PSYHRHPHGLR Trigger: CCGAAGCCCATGAGGGTGACGGTGATAAGAAGGGCAGTGCAGAGGGCAGCAGCGACGAAGAAGGGAAACTGG 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000162631.2 |
||
| 3UTR GCA 72 bp | CCACTCCTGCCCACTATCCACCCCAAAGGTCTAGAATaGCTGCAGCAGGGCAGAGGTGTCAAGAGGTGGAAA | + |
|
Preference number: 3 (lower is better) Translates to: PLLPTIHPKGLE*LQQGRGVKRWK Trigger: TTTCCACCTCTTGACACCTCTGCCCTGCTGCAGGCATTCTAGACCTTTGGGGTGGATAGTGGGCAGGAGTGG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000005017.15 |
||
| 3UTR GCA 72 bp | CTGGTTCATCGATCACCAGTTTCCCTTCTTCGTCGCTaGTGCCCTCTGCACTGCCCTTCTTATCACCGTCAC | + |
|
Preference number: 3 (lower is better) Translates to: LVHRSPVSLLRR*CPLHCPSYHRH Trigger: GTGACGGTGATAAGAAGGGCAGTGCAGAGGGCAGCAGCGACGAAGAAGGGAAACTGGTGATCGATGAACCAG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000162631.2 |
||
| 3UTR-3UTR CAA 90 bp | GTTCTTCTCCACCTCTACAGGCAGGGGCCTCTCACCCTCCAAGGCAGCTATCTCTTTTCGTTCTTCTCCTaGGCTGGTTCATCGATCACC | + |
|
Preference number: 3 (lower is better) Translates to: VLLHLYRQGPLTLQGSYLFSFFS*AGSSIT Trigger: GGTGATCGATGAACCAGCCAAGGAGAAGAACGAAAA...GAGATAGCTGCCTTGGAGGGTGAGAGGCCCCTGCCTGTAGAGGTGGAGAAGAAC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000162631.2 |
||
| 3UTR TCA 72 bp | ACACTCTCCAGGAGTGGGCTTAGAGGAGAGAGTGAGTaGGGGAGTAGGGTAAATAGGGTGGGAAAGGGTTCC | + |
|
Preference number: 3 (lower is better) Translates to: TLSRSGLRGESE*GSRVNRVGKGS Trigger: GGAACCCTTTCCCACCCTATTTACCCTACTCCCTCACTCACTCTCTCCTCTAAGCCCACTCCTGGAGAGTGT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000005017.15 |
||
| 3UTR TCA 72 bp | CTGACTACAGGCTGGCCTCAAGCATTGGGAAGTAGATaGAGGCAGCAGGTCTCCCCAGGTTATCATTTCTGC | + |
|
Preference number: 3 (lower is better) Translates to: LTTGWPQALGSR*RQQVSPGYHFC Trigger: GCAGAAATGATAACCTGGGGAGACCTGCTGCCTTCATCTACTTCCCAATGCTTGAGGCCAGCCTGTAGTCAG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000005017.15 |
||
| 3UTR CCA 72 bp | CCTCTTCAGCGTGCCCTTTTCGTTCTTCTCCTTGGCTaGTTCATCGATCACCAGTTTCCCTTCTTCGTCGCT | + |
|
Preference number: 3 (lower is better) Translates to: PLQRALFVLLLG*FIDHQFPFFVA Trigger: AGCGACGAAGAAGGGAAACTGGTGATCGATGAACCAGCCAAGGAGAAGAACGAAAAGGGCACGCTGAAGAGG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000162631.2 |
||
| 3UTR CCA 72 bp | CTCTCCTCTTCAGCGTGCCCTTTTCGTTCTTCTCCTTaGCTGGTTCATCGATCACCAGTTTCCCTTCTTCGT | + |
|
Preference number: 3 (lower is better) Translates to: LSSSACPFRSSP*LVHRSPVSLLR Trigger: ACGAAGAAGGGAAACTGGTGATCGATGAACCAGCCAAGGAGAAGAACGAAAAGGGCACGCTGAAGAGGAGAG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000162631.2 |
||
| 3UTR CCA 72 bp | AGGTGGAAACAGCAGCCTAGACCCCAGCAGAAACCCTaGGAAACAAGTGTAAAGAGATACAAGGCCTCATCT | + |
|
Preference number: 3 (lower is better) Translates to: RWKQQPRPQQKP*ETSVKRYKASS Trigger: AGATGAGGCCTTGTATCTCTTTACACTTGTTTCCCAGGGTTTCTGCTGGGGTCTAGGCTGCTGTTTCCACCT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000005017.15 |
||
| 3UTR-3UTR CAA 90 bp | GAAGTAGATGAAGGCAGCAGGTCTCCCCAGGTTATCATTTCTGCCCTGAGATCTACAGTGTCCTGTTTCTaGAATGTAGGCAGATGGGAA | + |
|
Preference number: 3 (lower is better) Translates to: EVDEGSRSPQVIISALRSTVSCF*NVGRWE Trigger: TTCCCATCTGCCTACATTCAAGAAACAGGACACTGT...AGATCTCAGGGCAGAAATGATAACCTGGGGAGACCTGCTGCCTTCATCTACTTC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000005017.15 |
||
| 3UTR-3UTR CAA 90 bp | TTTCCTTTATGTCTGGGTGAAATATCTGACTACAGGCTGGCCTCAAGCATTGGGTTAAACTACAATTCCTaGAACCCTGGGGTCAGGGGG | + |
|
Preference number: 3 (lower is better) Translates to: FPLCLGEISDYRLASSIGLNYNS*NPGVRG Trigger: CCCCCTGACCCCAGGGTTCAAGGAATTGTAGTTTAA...CCCAATGCTTGAGGCCAGCCTGTAGTCAGATATTTCACCCAGACATAAAGGAAA 48% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000005017.15 |
||
| 3UTR TCA 72 bp | AAGGCAGCAGGTCTCCCCAGGTTATCATTTCTGCCCTaGGATCTAAAGAGACATTTCCTCAATGCAAATCAG | + |
|
Preference number: 3 (lower is better) Translates to: KAAGLPRLSFLP*DLKRHFLNANQ Trigger: CTGATTTGCATTGAGGAAATGTCTCTTTAGATCTCAGGGCAGAAATGATAACCTGGGGAGACCTGCTGCCTT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000005017.15 |
||
| 3UTR-3UTR CAA 90 bp | AAAGAGACATTTCCTCAATGCAAATCAGTTGATTCTTCAGCTCTTAGCTCCCTCGTCCTAGGCCCAAACTaGGAAACTCCAAAGTCTAGA | + |
|
Preference number: 3 (lower is better) Translates to: KETFPQCKSVDSSALSSLVLGPN*ETPKSR Trigger: TCTAGACTTTGGAGTTTCCAAGTTTGGGCCTAGGAC...GAGGGAGCTAAGAGCTGAAGAATCAACTGATTTGCATTGAGGAAATGTCTCTTT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000005017.15 |
||
| 3UTR CCA 72 bp | GATAAGTGTTCCCAAAAATCAACAAGGATTTATGGATaGATGGTAGCCTCTCTCCCACAGTGTCCTGTTTCT | + |
|
Preference number: 3 (lower is better) Translates to: DKCSQKSTRIYG*MVASLPQCPVS Trigger: AGAAACAGGACACTGTGGGAGAGAGGCTACCATCCATCCATAAATCCTTGTTGATTTTTGGGAACACTTATC 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000005017.15 |
||
| CDS-3UTR CCA 90 bp | CCCAAAGGTCTAGAATGCCTGCAGCAGGGCAGAGGTGTCAAGAGGTGGAAACAGTCACCGTCACCCTCATaGGCTTCGGGCTCCACCTCG | + |
|
Preference number: 4 (lower is better) Translates to: PKGLECLQQGRGVKRWKQSPSPS*ASGSTS Trigger: CGAGGTGGAGCCCGAAGCCCATGAGGGTGACGGTGA...CTGTTTCCACCTCTTGACACCTCTGCCCTGCTGCAGGCATTCTAGACCTTTGGG 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000005017.15 |
||
| CDS-3UTR CCA 90 bp | CCCAAAGGTCTAGAATGCCTGCAGCAGGGCAGAGGTGTCAAGAGGTGGAAACAGTCCCTGGCCAGAGTCTaGCTCAGAGGGGGTGCTGTT | + |
|
Preference number: 4 (lower is better) Translates to: PKGLECLQQGRGVKRWKQSLARV*LRGGAV Trigger: AACAGCACCCCCTCTGAGCCAGACTCTGGCCAGGGA...CTGTTTCCACCTCTTGACACCTCTGCCCTGCTGCAGGCATTCTAGACCTTTGGG 58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000005017.15 |
||
| CDS-3UTR CCA 90 bp | GGGCTCTGCCGCACAACTCTTTTTCTGGGAGGACTCTGTTGGATTAGCCCTGGGAAGGGAAGAGGTCTTTaGGGCCCAGGAATGCCGTCT | + |
|
Preference number: 4 (lower is better) Translates to: GLCRTTLFLGGLCWISPGKGRGL*GPGMPS Trigger: AGACGGCATTCCTGGGCCCCAAAGACCTCTTCCCTT...CCCAGGGCTAATCCAACAGAGTCCTCCCAGAAAAAGAGTTGTGCGGCAGAGCCC 57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000162631.2 |
||
| CDS-3UTR GCA 90 bp | GATTCTTCAGCTCTTAGCTCCCTCCAGGTCCTAGGCCCAAACTTGGAAACTCCATCCCTTCTTCGTCGCTaGTGCCCTCTGCACTGCCCT | + |
|
Preference number: 4 (lower is better) Translates to: DSSALSSLQVLGPNLETPSLLRR*CPLHCP Trigger: AGGGCAGTGCAGAGGGCAGCAGCGACGAAGAAGGGA...TGGAGTTTCCAAGTTTGGGCCTAGGACCTGGAGGGAGCTAAGAGCTGAAGAATC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000005017.15 |
||
| CDS-3UTR CCA 90 bp | GAAGTAGATGAAGGCAGCAGGTCTCCCCAGGTTATCATTTCTGCCCTGAGATCTTCTGCAGGAGGTCCCTaGCCAGAGTCTGGCTCAGAG | + |
|
Preference number: 4 (lower is better) Translates to: EVDEGSRSPQVIISALRSSAGGP*PESGSE Trigger: CTCTGAGCCAGACTCTGGCCAGGGACCTCCTGCAGA...AGATCTCAGGGCAGAAATGATAACCTGGGGAGACCTGCTGCCTTCATCTACTTC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000005017.15 |
||
| 3UTR CAA 72 bp | GCTCTCCTCTTCAGCGTGCCCTTTTCGTTCTTCTCCTaGGCTGGTTCATCGATCACCAGTTTCCCTTCTTCG | + |
|
Preference number: 4 (lower is better) Translates to: ALLFSVPFSFFS*AGSSITSFPSS Trigger: CGAAGAAGGGAAACTGGTGATCGATGAACCAGCCAAGGAGAAGAACGAAAAGGGCACGCTGAAGAGGAGAGC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000162631.2 |
||
| CDS-3UTR GCA 90 bp | GAAGTAGATGAAGGCAGCAGGTCTCCCCAGGTTATCATTTCTGCCCTGAGATCTCTGGCTCAGAGGGGGTaGTGTTCTTCTCCACCTCTA | + |
|
Preference number: 4 (lower is better) Translates to: EVDEGSRSPQVIISALRSLAQRG*CSSPPL Trigger: TAGAGGTGGAGAAGAACAGCACCCCCTCTGAGCCAG...AGATCTCAGGGCAGAAATGATAACCTGGGGAGACCTGCTGCCTTCATCTACTTC 52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000005017.15 |
||
| CDS-3UTR CCA 90 bp | GAAGTAGATGAAGGCAGCAGGTCTCCCCAGGTTATCATTTCTGCCCTGAGATCTAAGGGAAGAGGTCTTTaGGGCCCAGGAATGCCGTCT | + |
|
Preference number: 4 (lower is better) Translates to: EVDEGSRSPQVIISALRSKGRGL*GPGMPS Trigger: AGACGGCATTCCTGGGCCCCAAAGACCTCTTCCCTT...AGATCTCAGGGCAGAAATGATAACCTGGGGAGACCTGCTGCCTTCATCTACTTC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000005017.15 |
||
| CDS-3UTR TCA 90 bp | CAAAGTCTAGATGTTAAACTACAATTCCTTGAACCCTGGGGTCAGGGGGATAAGGGCTCTCATGATCTCTaGCGCCCTGGGCTTCAGCCT | + |
|
Preference number: 4 (lower is better) Translates to: QSLDVKLQFLEPWGQGDKGSHDL*RPGLQP Trigger: AGGCTGAAGCCCAGGGCGTCAGAGATCATGAGAGCC...CTTATCCCCCTGACCCCAGGGTTCAAGGAATTGTAGTTTAACATCTAGACTTTG 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000005017.15 |
||
| CDS-3UTR GCA 90 bp | TTTCCTTTATGTCTGGGTGAAATATCTGACTACAGGCTGGCCTCAAGCATTGGGTCCCTCTTCTTCCTCTaGAGGAGGTCCCTGGCCAGA | + |
|
Preference number: 4 (lower is better) Translates to: FPLCLGEISDYRLASSIGSLFFL*RRSLAR Trigger: TCTGGCCAGGGACCTCCTGCAGAGGAAGAAGAGGGA...CCCAATGCTTGAGGCCAGCCTGTAGTCAGATATTTCACCCAGACATAAAGGAAA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000005017.15 |
||
| 3UTR CAA 72 bp | ATGGATGGTAGCCTCTCTCCCACAGTGTCCTGTTTCTaGAATGTAGGCAGATGGGAAAATAAGTGTGGGGGC | + |
|
Preference number: 4 (lower is better) Translates to: MDGSLSPTVSCF*NVGRWENKCGG Trigger: GCCCCCACACTTATTTTCCCATCTGCCTACATTCAAGAAACAGGACACTGTGGGAGAGAGGCTACCATCCAT 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000005017.15 |
||
| CDS-3UTR CCA 90 bp | GATTCTTCAGCTCTTAGCTCCCTCCAGGTCCTAGGCCCAAACTTGGAAACTCCAGTTCTTCTCCTTGGCTaGTTCATCGATCACCAGTTT | + |
|
Preference number: 4 (lower is better) Translates to: DSSALSSLQVLGPNLETPVLLLG*FIDHQF Trigger: AAACTGGTGATCGATGAACCAGCCAAGGAGAAGAAC...TGGAGTTTCCAAGTTTGGGCCTAGGACCTGGAGGGAGCTAAGAGCTGAAGAATC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000005017.15 |
||
| CDS-3UTR GCA 90 bp | AAAGAGACATTTCCTCAATGCAAATCAGTTGATTCTTCAGCTCTTAGCTCCCTCGTCGCTGCTGCCCTCTaGACTGCCCTTCTTATCACC | + |
|
Preference number: 4 (lower is better) Translates to: KETFPQCKSVDSSALSSLVAAAL*TALLIT Trigger: GGTGATAAGAAGGGCAGTGCAGAGGGCAGCAGCGAC...GAGGGAGCTAAGAGCTGAAGAATCAACTGATTTGCATTGAGGAAATGTCTCTTT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000005017.15 |
||
| CDS-3UTR GCA 90 bp | AAAGAGACATTTCCTCAATGCAAATCAGTTGATTCTTCAGCTCTTAGCTCCCTCTGCTGCCCTCTGCACTaGCCTTCTTATCACCGTCAC | + |
|
Preference number: 4 (lower is better) Translates to: KETFPQCKSVDSSALSSLCCPLH*PSYHRH Trigger: GTGACGGTGATAAGAAGGGCAGTGCAGAGGGCAGCA...GAGGGAGCTAAGAGCTGAAGAATCAACTGATTTGCATTGAGGAAATGTCTCTTT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000005017.15 |
||
| CDS-3UTR CCA 90 bp | CAAAGTCTAGATGTTAAACTACAATTCCTTGAACCCTGGGGTCAGGGGGATAAGTTTCGTTCTTCTCCTTaGCTGGTTCATCGATCACCA | + |
|
Preference number: 4 (lower is better) Translates to: QSLDVKLQFLEPWGQGDKFRSSP*LVHRSP Trigger: TGGTGATCGATGAACCAGCCAAGGAGAAGAACGAAA...CTTATCCCCCTGACCCCAGGGTTCAAGGAATTGTAGTTTAACATCTAGACTTTG 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000005017.15 |
||
| CDS GCA 90 bp | CTTATCACCGTCACCCTCATGGGCTTCGGGCTCCACCTCGGGCTCTaGCGCACAACTCTTTTTCTGGGAGGACTGGTAGCCAGAGGCCTT | + |
|
Preference number: 5 (lower is better) Translates to: LITVTLMGFGLHLGL*RTTLFLGGLVARGL Trigger: AAGGCCTCTGGCTACCAGTCCTCCCAGAAAAAGAGTTGTGCGGCAGAGCCCGAGGTGGAGCCCGAAGCCCATGAGGGTGACGGTGATAAG 60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000005017.15 ENSMUST00000159492.8 |
||
| CDS-3UTR CAA 90 bp | GTTCTTCTCCACCTCTACAGGCAGGGGCCTCTCACCCTCCAAGGCAGCTATCTCGCCTTGACTGTAGGGTaGTTCTCGATCTCCCACAGC | + |
|
Preference number: 5 (lower is better) Translates to: VLLHLYRQGPLTLQGSYLALTVG*FSISHS Trigger: GCTGTGGGAGATCGAGAACAACCCTACAGTCAAGGC...GAGATAGCTGCCTTGGAGGGTGAGAGGCCCCTGCCTGTAGAGGTGGAGAAGAAC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000162631.2 |
||
| CDS-3UTR CAA 90 bp | AAGAGGTGGAAACAGCAGCCTAGACCCCAGCAGAAACCCTGGGAAACAAGTGTAGCCTTGACTGTAGGGTaGTTCTCGATCTCCCACAGC | + |
|
Preference number: 5 (lower is better) Translates to: KRWKQQPRPQQKPWETSVALTVG*FSISHS Trigger: GCTGTGGGAGATCGAGAACAACCCTACAGTCAAGGC...TACACTTGTTTCCCAGGGTTTCTGCTGGGGTCTAGGCTGCTGTTTCCACCTCTT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000005017.15 |
||
| CDS-3UTR CAA 90 bp | AAGAGGTGGAAACAGCAGCCTAGACCCCAGCAGAAACCCTGGGAAACAAGTGTAAAGGCAGCTATCTCCTaGTCCTCCTCCTCATGGTCT | + |
|
Preference number: 5 (lower is better) Translates to: KRWKQQPRPQQKPWETSVKAAIS*SSSSWS Trigger: AGACCATGAGGAGGAGGACAAGGAGATAGCTGCCTT...TACACTTGTTTCCCAGGGTTTCTGCTGGGGTCTAGGCTGCTGTTTCCACCTCTT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000005017.15 |
||
| CDS-3UTR CAA 90 bp | AAAGAGACATTTCCTCAATGCAAATCAGTTGATTCTTCAGCTCTTAGCTCCCTCACCAGGTCTCCGCACTaGTACTCTTTCTGCCGGTTG | + |
|
Preference number: 5 (lower is better) Translates to: KETFPQCKSVDSSALSSLTRSPH*YSFCRL Trigger: CAACCGGCAGAAAGAGTACAAGTGCGGAGACCTGGT...GAGGGAGCTAAGAGCTGAAGAATCAACTGATTTGCATTGAGGAAATGTCTCTTT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000005017.15 |
||
| CDS-3UTR CAA 90 bp | TTTCCTTTATGTCTGGGTGAAATATCTGACTACAGGCTGGCCTCAAGCATTGGGTTTTCGTTCTTCTCCTaGGCTGGTTCATCGATCACC | + |
|
Preference number: 5 (lower is better) Translates to: FPLCLGEISDYRLASSIGFSFFS*AGSSIT Trigger: GGTGATCGATGAACCAGCCAAGGAGAAGAACGAAAA...CCCAATGCTTGAGGCCAGCCTGTAGTCAGATATTTCACCCAGACATAAAGGAAA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000005017.15 |
||
| CDS GCA 72 bp | GTCACCCTCATGGGCTTCGGGCTCCACCTCGGGCTCTaGCGCACAACTCTTTTTCTGGGAGGACTGGTAGCC | + |
|
Preference number: 6 (lower is better) Translates to: VTLMGFGLHLGL*RTTLFLGGLVA Trigger: GGCTACCAGTCCTCCCAGAAAAAGAGTTGTGCGGCAGAGCCCGAGGTGGAGCCCGAAGCCCATGAGGGTGAC 62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000005017.15 ENSMUST00000159492.8 |
||