Pregenerated sensors for HDDC2 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000000295Ensembl transcript IDs: ENSMUST00000000304.14, ENSMUST00000159194.3
Found 50 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR-3UTR GCA 90 bp | AGAAAGCAGCACTGTGGAGCAGCAAGGCGATCTCAGGAGCCCGGCTCCGCTGAGTCACACTGGTCCAGCTaGTTCACGAATTTGGCTTCT | + |
|
Preference number: 2 (lower is better) Translates to: RKQHCGAARRSQEPGSAESHWSS*FTNLAS Trigger: AGAAGCCAAATTCGTGAAGCAGCTGGACCAGTGTGA...CTCAGCGGAGCCGGGCTCCTGAGATCGCCTTGCTGCTCCACAGTGCTGCTTTCT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000159194.3 |
||
| 3UTR-3UTR CCA 90 bp | AGCATTCTCTTCTCCAGTCTTCATCCACGGCATCTTCCTGTGCATTTCCAGTTCAACAGACTCTCATCTTaGGGAAAACCCCAGGAAACA | + |
|
Preference number: 2 (lower is better) Translates to: SILFSSLHPRHLPVHFQFNRLSS*GKPQET Trigger: TGTTTCCTGGGGTTTTCCCCAAGATGAGAGTCTGTT...GAACTGGAAATGCACAGGAAGATGCCGTGGATGAAGACTGGAGAAGAGAATGCT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000000304.14 ENSMUST00000159194.3 |
||
| 3UTR-3UTR CCA 90 bp | TCTCCAGTCTTCATCCACGGCATCTTCCTGTGCATTTCCAGTTCAGTGGCTTCTGCTTCTTTTAGGGTCTaGATTATCTCACCTTTCTTG | + |
|
Preference number: 2 (lower is better) Translates to: SPVFIHGIFLCISSSVASASFRV*IISPFL Trigger: CAAGAAAGGTGAGATAATCCAGACCCTAAAAGAAGC...AGAAGCCACTGAACTGGAAATGCACAGGAAGATGCCGTGGATGAAGACTGGAGA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000000304.14 ENSMUST00000159194.3 |
||
| CDS-3UTR TCA 90 bp | GCAGCAAGGCGATCTCAGGAGCCCGGCTCCGCTGAGGCTGTGGCCATGCTGGCACATATAGCTCCTTCCTaGGGTCCTCTGGCAGCAGCT | + |
|
Preference number: 4 (lower is better) Translates to: AARRSQEPGSAEAVAMLAHIAPS*GPLAAA Trigger: AGCTGCTGCCAGAGGACCTCAGGAAGGAGCTATATG...TGCCAGCATGGCCACAGCCTCAGCGGAGCCGGGCTCCTGAGATCGCCTTGCTGC 63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000159194.3 |
||
| CDS-3UTR TCA 90 bp | AGAAAGCAGCACTGTGGAGCAGCAAGGCGATCTCAGGAGCCCGGCTCCGCTGAGGCCATCCGGTACATGTaGTCTGACACGCTTTCTGGC | + |
|
Preference number: 4 (lower is better) Translates to: RKQHCGAARRSQEPGSAEAIRYM*SDTLSG Trigger: GCCAGAAAGCGTGTCAGATCACATGTACCGGATGGC...CTCAGCGGAGCCGGGCTCCTGAGATCGCCTTGCTGCTCCACAGTGCTGCTTTCT 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000159194.3 |
||
| CDS-3UTR TCA 90 bp | AGAAAGCAGCACTGTGGAGCAGCAAGGCGATCTCAGGAGCCCGGCTCCGCTGAGACTGTCCCTTCTGAGTaGAACGGAGTTCCAGGGGCA | + |
|
Preference number: 4 (lower is better) Translates to: RKQHCGAARRSQEPGSAETVPSE*NGVPGA Trigger: TGCCCCTGGAACTCCGTTTCACTCAGAAGGGACAGT...CTCAGCGGAGCCGGGCTCCTGAGATCGCCTTGCTGCTCCACAGTGCTGCTTTCT 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000159194.3 |
||
| CDS-3UTR GCA 90 bp | CAGCAAGGCGATCTCAGGAGCCCGGCTCCGCTGAGGCTGTGGCCATGCTGGCATGATGTTATCTGCGGGTaGTATGTCCCCAACGATGCA | + |
|
Preference number: 4 (lower is better) Translates to: QQGDLRSPAPLRLWPCWHDVICG*YVPNDA Trigger: TGCATCGTTGGGGACATAGCACCCGCAGATAACATC...ATGCCAGCATGGCCACAGCCTCAGCGGAGCCGGGCTCCTGAGATCGCCTTGCTG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000159194.3 |
||
| CDS-3UTR GCA 90 bp | CAGCAAGGCGATCTCAGGAGCCCGGCTCCGCTGAGGCTGTGGCCATGCTGGCATTTTAGGGATGTTATCTaGGGGTGCTATGTCCCCAAC | + |
|
Preference number: 4 (lower is better) Translates to: QQGDLRSPAPLRLWPCWHFRDVI*GCYVPN Trigger: GTTGGGGACATAGCACCCGCAGATAACATCCCTAAA...ATGCCAGCATGGCCACAGCCTCAGCGGAGCCGGGCTCCTGAGATCGCCTTGCTG 59% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000159194.3 |
||
| CDS-3UTR TCA 90 bp | CTGTGCATTTCCAGTTCAGTGGCTTCTTTTAGGGTCTGGATTATCTCACCTTTCGGAGCCCGGCTCCGCTaGGGCTGTGGCCATGCTGGC | + |
|
Preference number: 4 (lower is better) Translates to: LCISSSVASFRVWIISPFGARLR*GCGHAG Trigger: GCCAGCATGGCCACAGCCTCAGCGGAGCCGGGCTCC...GAAAGGTGAGATAATCCAGACCCTAAAAGAAGCCACTGAACTGGAAATGCACAG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000000304.14 |
||
| CDS-3UTR TCA 90 bp | AGCATTCTCTTCTCCAGTCTTCATCCACGGCATCTTCCTGTGCATTTCCAGTTCGCCATCCGGTACATGTaGTCTGACACGCTTTCTGGC | + |
|
Preference number: 4 (lower is better) Translates to: SILFSSLHPRHLPVHFQFAIRYM*SDTLSG Trigger: GCCAGAAAGCGTGTCAGATCACATGTACCGGATGGC...GAACTGGAAATGCACAGGAAGATGCCGTGGATGAAGACTGGAGAAGAGAATGCT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000000304.14 ENSMUST00000159194.3 |
||
| CDS-3UTR GCA 90 bp | CTTCTCCAGTCTTCATCCACGGCATCTTCCTGTGCATTTCCAGTTCAGTGGCTTCCCAACGATGCATTCTaGCATATCGTGAACCAGGGC | + |
|
Preference number: 4 (lower is better) Translates to: LLQSSSTASSCAFPVQWLPNDAF*HIVNQG Trigger: GCCCTGGTTCACGATATGGCAGAATGCATCGTTGGG...AAGCCACTGAACTGGAAATGCACAGGAAGATGCCGTGGATGAAGACTGGAGAAG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000000304.14 ENSMUST00000159194.3 |
||
| CDS-3UTR TCA 90 bp | CTTCTCCAGTCTTCATCCACGGCATCTTCCTGTGCATTTCCAGTTCAGTGGCTTCCGGTACATGTGATCTaGCACGCTTTCTGGCTTTTC | + |
|
Preference number: 4 (lower is better) Translates to: LLQSSSTASSCAFPVQWLPVHVI*HAFWLF Trigger: GAAAAGCCAGAAAGCGTGTCAGATCACATGTACCGG...AAGCCACTGAACTGGAAATGCACAGGAAGATGCCGTGGATGAAGACTGGAGAAG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000000304.14 ENSMUST00000159194.3 |
||
| CDS-3UTR CCA 90 bp | CACAGAAAAGCATTCTCTTCTCCAGTCTTCATCCACGGCATCTTCCTGTGCATTCTTCCTGAGGTCCTCTaGCAGCAGCTGGGTTATCTG | + |
|
Preference number: 4 (lower is better) Translates to: HRKAFSSPVFIHGIFLCILPEVL*QQLGYL Trigger: CAGATAACCCAGCTGCTGCCAGAGGACCTCAGGAAG...AATGCACAGGAAGATGCCGTGGATGAAGACTGGAGAAGAGAATGCTTTTCTGTG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000000304.14 ENSMUST00000159194.3 |
||
| CDS-3UTR GCA 90 bp | ATTCTGAGGCCTGAAGGATCATTTCACACTGGTCCAGCTGCTTCACGAATTTGGCACCATGGCCATAACTaGCATCCGGTACATGTGATC | + |
|
Preference number: 4 (lower is better) Translates to: ILRPEGSFHTGPAASRIWHHGHN*HPVHVI Trigger: GATCACATGTACCGGATGGCAGTTATGGCCATGGTG...CCAAATTCGTGAAGCAGCTGGACCAGTGTGAAATGATCCTTCAGGCCTCAGAAT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000159194.3 |
||
| CDS-3UTR CCA 90 bp | TCTCACCTTTCTTGTTCAAGACCAGATCACAGAAAACAGACTCTCATCTTGGGGCTTCCTGAGGTCCTCTaGCAGCAGCTGGGTTATCTG | + |
|
Preference number: 4 (lower is better) Translates to: SHLSCSRPDHRKQTLILGLPEVL*QQLGYL Trigger: CAGATAACCCAGCTGCTGCCAGAGGACCTCAGGAAG...CCCCAAGATGAGAGTCTGTTTTCTGTGATCTGGTCTTGAACAAGAAAGGTGAGA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000000304.14 ENSMUST00000159194.3 |
||
| CDS-3UTR CCA 90 bp | TCTCCAGTCTTCATCCACGGCATCTTCCTGTGCATTTCCAGTTCAGTGGCTTCTAGGCTGTGGCCATGCTaGCATTTCTTTCTGTTTCCA | + |
|
Preference number: 4 (lower is better) Translates to: SPVFIHGIFLCISSSVASRLWPC*HFFLFP Trigger: TGGAAACAGAAAGAAATGCCAGCATGGCCACAGCCT...AGAAGCCACTGAACTGGAAATGCACAGGAAGATGCCGTGGATGAAGACTGGAGA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000000304.14 |
||
| CDS-3UTR GCA 90 bp | CTGTGCATTTCCAGTTCAGTGGCTTCTTTTAGGGTCTGGATTATCTCACCTTTCCCCAACGATGCATTCTaGCATATCGTGAACCAGGGC | + |
|
Preference number: 4 (lower is better) Translates to: LCISSSVASFRVWIISPFPNDAF*HIVNQG Trigger: GCCCTGGTTCACGATATGGCAGAATGCATCGTTGGG...GAAAGGTGAGATAATCCAGACCCTAAAAGAAGCCACTGAACTGGAAATGCACAG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000000304.14 ENSMUST00000159194.3 |
||
| CDS-3UTR GCA 90 bp | TCCTGTGCATTTCCAGTTCAGTGGCTTCTTTTAGGGTCTGGATTATCTCACCTTCACCATGGCCATAACTaGCATCCGGTACATGTGATC | + |
|
Preference number: 4 (lower is better) Translates to: SCAFPVQWLLLGSGLSHLHHGHN*HPVHVI Trigger: GATCACATGTACCGGATGGCAGTTATGGCCATGGTG...AAGGTGAGATAATCCAGACCCTAAAAGAAGCCACTGAACTGGAAATGCACAGGA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000000304.14 ENSMUST00000159194.3 |
||
| CDS-3UTR CCA 90 bp | TCCTGTGCATTTCCAGTTCAGTGGCTTCTTTTAGGGTCTGGATTATCTCACCTTTCCTCTGGCAGCAGCTaGGTTATCTGTTTCATAGCC | + |
|
Preference number: 4 (lower is better) Translates to: SCAFPVQWLLLGSGLSHLSSGSS*VICFIA Trigger: GGCTATGAAACAGATAACCCAGCTGCTGCCAGAGGA...AAGGTGAGATAATCCAGACCCTAAAAGAAGCCACTGAACTGGAAATGCACAGGA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000000304.14 ENSMUST00000159194.3 |
||
| CDS-3UTR CCA 90 bp | CTGTGCATTTCCAGTTCAGTGGCTTCTTTTAGGGTCTGGATTATCTCACCTTTCTCCTCTGGCAGCAGCTaGGTTATCTGTTTCATAGCC | + |
|
Preference number: 4 (lower is better) Translates to: LCISSSVASFRVWIISPFSSGSS*VICFIA Trigger: GGCTATGAAACAGATAACCCAGCTGCTGCCAGAGGA...GAAAGGTGAGATAATCCAGACCCTAAAAGAAGCCACTGAACTGGAAATGCACAG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000000304.14 ENSMUST00000159194.3 |
||
| CDS-3UTR TCA 90 bp | TTAATTCACACAGAAAAGCATTCTCTTCTCCAGTCTTCATCCACGGCATCTTCCCCGGTACATGTGATCTaGCACGCTTTCTGGCTTTTC | + |
|
Preference number: 4 (lower is better) Translates to: LIHTEKHSLLQSSSTASSPVHVI*HAFWLF Trigger: GAAAAGCCAGAAAGCGTGTCAGATCACATGTACCGG...GGAAGATGCCGTGGATGAAGACTGGAGAAGAGAATGCTTTTCTGTGTGAATTAA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000000304.14 ENSMUST00000159194.3 |
||
| CDS-3UTR TCA 90 bp | TGTGCATTTCCAGTTCAGTGGCTTCTTTTAGGGTCTGGATTATCTCACCTTTCTCATTCTGCCATATCGTaGACCAGGGCTAGGCGTATA | + |
|
Preference number: 4 (lower is better) Translates to: CAFPVQWLLLGSGLSHLSHSAIS*TRARRI Trigger: TATACGCCTAGCCCTGGTTCACGATATGGCAGAATG...AGAAAGGTGAGATAATCCAGACCCTAAAAGAAGCCACTGAACTGGAAATGCACA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000000304.14 ENSMUST00000159194.3 |
||
| CDS-3UTR TCA 90 bp | GATTATCTCACCTTTCTTGTTCAAGACCAGATCACAGAAAACAGACTCTCATCTCATATAGCTCCTTCCTaGGGTCCTCTGGCAGCAGCT | + |
|
Preference number: 4 (lower is better) Translates to: DYLTFLVQDQITENRLSSHIAPS*GPLAAA Trigger: AGCTGCTGCCAGAGGACCTCAGGAAGGAGCTATATG...AGATGAGAGTCTGTTTTCTGTGATCTGGTCTTGAACAAGAAAGGTGAGATAATC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000000304.14 ENSMUST00000159194.3 |
||
| CDS-3UTR GCA 90 bp | TTAATTCACACAGAAAAGCATTCTCTTCTCCAGTCTTCATCCACGGCATCTTCCGATGTTATCTGCGGGTaGTATGTCCCCAACGATGCA | + |
|
Preference number: 4 (lower is better) Translates to: LIHTEKHSLLQSSSTASSDVICG*YVPNDA Trigger: TGCATCGTTGGGGACATAGCACCCGCAGATAACATC...GGAAGATGCCGTGGATGAAGACTGGAGAAGAGAATGCTTTTCTGTGTGAATTAA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000000304.14 ENSMUST00000159194.3 |
||
| CDS-3UTR TCA 90 bp | CTGGATTATCTCACCTTTCTTGTTCAAGACCAGATCACAGAAAACAGACTCTCAGCTTCTTCGCTAGACTaGGTCTCATACTCTTCCCAG | + |
|
Preference number: 4 (lower is better) Translates to: LDYLTFLVQDQITENRLSASSLD*VSYSSQ Trigger: CTGGGAAGAGTATGAGACTCAGTCTAGCGAAGAAGC...TGAGAGTCTGTTTTCTGTGATCTGGTCTTGAACAAGAAAGGTGAGATAATCCAG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000000304.14 |
||
| CDS-3UTR TCA 90 bp | TCCTGTGCATTTCCAGTTCAGTGGCTTCTTTTAGGGTCTGGATTATCTCACCTTCTATCTCAGGGTGACTaGATTTTCCTGCTGTGGAAT | + |
|
Preference number: 4 (lower is better) Translates to: SCAFPVQWLLLGSGLSHLLSQGD*IFLLWN Trigger: ATTCCACAGCAGGAAAATTCAGTCACCCTGAGATAG...AAGGTGAGATAATCCAGACCCTAAAAGAAGCCACTGAACTGGAAATGCACAGGA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000000304.14 |
||
| CDS-3UTR GCA 90 bp | TGTGCATTTCCAGTTCAGTGGCTTCTTTTAGGGTCTGGATTATCTCACCTTTCTTTTAGGGATGTTATCTaGGGGTGCTATGTCCCCAAC | + |
|
Preference number: 4 (lower is better) Translates to: CAFPVQWLLLGSGLSHLSFRDVI*GCYVPN Trigger: GTTGGGGACATAGCACCCGCAGATAACATCCCTAAA...AGAAAGGTGAGATAATCCAGACCCTAAAAGAAGCCACTGAACTGGAAATGCACA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt. Matches the following 2 transcripts: ENSMUST00000000304.14 ENSMUST00000159194.3 |
||
| CDS-3UTR GCA 90 bp | TGTGCATTTCCAGTTCAGTGGCTTCTTTTAGGGTCTGGATTATCTCACCTTTCTTCACACTGGTCCAGCTaGTTCACGAATTTGGCTTCT | + |
|
Preference number: 4 (lower is better) Translates to: CAFPVQWLLLGSGLSHLSSHWSS*FTNLAS Trigger: AGAAGCCAAATTCGTGAAGCAGCTGGACCAGTGTGA...AGAAAGGTGAGATAATCCAGACCCTAAAAGAAGCCACTGAACTGGAAATGCACA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000000304.14 |
||
| CDS-3UTR GCA 90 bp | TTAATTCACACAGAAAAGCATTCTCTTCTCCAGTCTTCATCCACGGCATCTTCCCTATGTCCCCAACGATaGATTCTGCCATATCGTGAA | + |
|
Preference number: 4 (lower is better) Translates to: LIHTEKHSLLQSSSTASSLCPQR*ILPYRE Trigger: TTCACGATATGGCAGAATGCATCGTTGGGGACATAG...GGAAGATGCCGTGGATGAAGACTGGAGAAGAGAATGCTTTTCTGTGTGAATTAA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000000304.14 ENSMUST00000159194.3 |
||
| CDS-3UTR GCA 90 bp | ACGGCATCTTCCTGTGCATTTCCAGTTCAGTGGCTTCTTTTAGGGTCTGGATTAGTGACTGAATTTTCCTaGTGTGGAATCATAGAAGTC | + |
|
Preference number: 4 (lower is better) Translates to: TASSCAFPVQWLLLGSGLVTEFS*CGIIEV Trigger: GACTTCTATGATTCCACAGCAGGAAAATTCAGTCAC...TAATCCAGACCCTAAAAGAAGCCACTGAACTGGAAATGCACAGGAAGATGCCGT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000000304.14 |
||
| CDS-3UTR CCA 90 bp | GATTATCTCACCTTTCTTGTTCAAGACCAGATCACAGAAAACAGACTCTCATCTAGGATCATTTCACACTaGTCCAGCTGCTTCACGAAT | + |
|
Preference number: 4 (lower is better) Translates to: DYLTFLVQDQITENRLSSRIISH*SSCFTN Trigger: ATTCGTGAAGCAGCTGGACCAGTGTGAAATGATCCT...AGATGAGAGTCTGTTTTCTGTGATCTGGTCTTGAACAAGAAAGGTGAGATAATC 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000000304.14 |
||
| CDS GCA 90 bp | TCGACATTTCTGTATACCCAGCCAGTCCGTGGAACTCTCTTGAGCTaGCCAACTAGACGCAGAAAACGCAACAGCCCGGCTCCAGAGCCG | + |
|
Preference number: 5 (lower is better) Translates to: STFLYTQPVRGTLLS*PTRRRKRNSPAPEP Trigger: CGGCTCTGGAGCCGGGCTGTTGCGTTTTCTGCGTCTAGTTGGGCAGCTCAAGAGAGTTCCACGGACTGGCTGGGTATACAGAAATGTCGA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000000304.14 |
||
| CDS TCA 90 bp | GCTTTTCGACATTTCTGTATACCCAGCCAGTCCGTGGAACTCTCTTaGGCTGCCCAACTAGACGCAGAAAACGCAACAGCCCGGCTCCAG | + |
|
Preference number: 5 (lower is better) Translates to: AFRHFCIPSQSVELS*AAQLDAENATARLQ Trigger: CTGGAGCCGGGCTGTTGCGTTTTCTGCGTCTAGTTGGGCAGCTCAAGAGAGTTCCACGGACTGGCTGGGTATACAGAAATGTCGAAAAGC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000000304.14 |
||
| CDS TCA 90 bp | CGGTCATCTCTGGTCACCATGGCCATAACTGCCATCCGGTACATGTaGTCTGACACGCTTTCTGGCTTTTCGACATTTCTGTATACCCAG | + |
|
Preference number: 5 (lower is better) Translates to: RSSLVTMAITAIRYM*SDTLSGFSTFLYTQ Trigger: CTGGGTATACAGAAATGTCGAAAAGCCAGAAAGCGTGTCAGATCACATGTACCGGATGGCAGTTATGGCCATGGTGACCAGAGATGACCG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000000304.14 ENSMUST00000159194.3 |
||
| CDS CCA 90 bp | TCCCAGAGTTCATATAGCTCCTTCCTGAGGTCCTCTGGCAGCAGCTaGGTTATCTGTTTCATAGCCTCCTCTTCTCTCCTGTGTTTCTCT | + |
|
Preference number: 5 (lower is better) Translates to: SQSSYSSFLRSSGSS*VICFIASSSLLCFS Trigger: AGAGAAACACAGGAGAGAAGAGGAGGCTATGAAACAGATAACCCAGCTGCTGCCAGAGGACCTCAGGAAGGAGCTATATGAACTCTGGGA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000000304.14 ENSMUST00000159194.3 |
||
| CDS-3UTR CAA 90 bp | AATTCACACAGAAAAGCATTCTCTTCTCCAGTCTTCATCCACGGCATCTTCCTGGTCCGTGGAACTCTCTaGAGCTGCCCAACTAGACGC | + |
|
Preference number: 5 (lower is better) Translates to: NSHRKAFSSPVFIHGIFLVRGTL*SCPTRR Trigger: GCGTCTAGTTGGGCAGCTCAAGAGAGTTCCACGGAC...CAGGAAGATGCCGTGGATGAAGACTGGAGAAGAGAATGCTTTTCTGTGTGAATT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000000304.14 |
||
| CDS TCA 90 bp | ATCTCTGGTCACCATGGCCATAACTGCCATCCGGTACATGTGATCTaGCACGCTTTCTGGCTTTTCGACATTTCTGTATACCCAGCCAGT | + |
|
Preference number: 5 (lower is better) Translates to: ISGHHGHNCHPVHVI*HAFWLFDISVYPAS Trigger: ACTGGCTGGGTATACAGAAATGTCGAAAAGCCAGAAAGCGTGTCAGATCACATGTACCGGATGGCAGTTATGGCCATGGTGACCAGAGAT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000000304.14 ENSMUST00000159194.3 |
||
| CDS TCA 90 bp | TTATCTGCGGGTGCTATGTCCCCAACGATGCATTCTGCCATATCGTaGACCAGGGCTAGGCGTATACATCTATCCTTGTTAAGACGGTCA | + |
|
Preference number: 5 (lower is better) Translates to: LSAGAMSPTMHSAIS*TRARRIHLSLLRRS Trigger: TGACCGTCTTAACAAGGATAGATGTATACGCCTAGCCCTGGTTCACGATATGGCAGAATGCATCGTTGGGGACATAGCACCCGCAGATAA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000000304.14 ENSMUST00000159194.3 |
||
| CDS TCA 90 bp | TCACACTGGTCCAGCTGCTTCACGAATTTGGCTTCTTCGCTAGACTaGGTCTCATACTCTTCCCAGAGTTCATATAGCTCCTTCCTGAGG | + |
|
Preference number: 5 (lower is better) Translates to: SHWSSCFTNLASSLD*VSYSSQSSYSSFLR Trigger: CCTCAGGAAGGAGCTATATGAACTCTGGGAAGAGTATGAGACTCAGTCTAGCGAAGAAGCCAAATTCGTGAAGCAGCTGGACCAGTGTGA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000000304.14 |
||
| CDS-3UTR CAA 90 bp | CTTCTCCAGTCTTCATCCACGGCATCTTCCTGTGCATTTCCAGTTCAGTGGCTTGGAATCATAGAAGTCTaGAAGTCTCCCAGGCTTATT | + |
|
Preference number: 5 (lower is better) Translates to: LLQSSSTASSCAFPVQWLGIIEV*KSPRLI Trigger: AATAAGCCTGGGAGACTTCAAGACTTCTATGATTCC...AAGCCACTGAACTGGAAATGCACAGGAAGATGCCGTGGATGAAGACTGGAGAAG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000000304.14 |
||
| CDS-3UTR CAA 90 bp | TCTGGATTATCTCACCTTTCTTGTTCAAGACCAGATCACAGAAAACAGACTCTCCGTATACATCTATCCTaGTTAAGACGGTCATCTCTG | + |
|
Preference number: 5 (lower is better) Translates to: SGLSHLSCSRPDHRKQTLRIHLS*LRRSSL Trigger: CAGAGATGACCGTCTTAACAAGGATAGATGTATACG...GAGAGTCTGTTTTCTGTGATCTGGTCTTGAACAAGAAAGGTGAGATAATCCAGA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000000304.14 ENSMUST00000159194.3 |
||
| CDS-3UTR CAA 90 bp | TGGAATCATAGAAGTCTTGAAGTCTCCCAGGCTTATTCTCTAGGTCTTCATATTCGTATACATCTATCCTaGTTAAGACGGTCATCTCTG | + |
|
Preference number: 5 (lower is better) Translates to: WNHRSLEVSQAYSLGLHIRIHLS*LRRSSL Trigger: CAGAGATGACCGTCTTAACAAGGATAGATGTATACG...AATATGAAGACCTAGAGAATAAGCCTGGGAGACTTCAAGACTTCTATGATTCCA 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000159194.3 |
||
| CDS CAA 90 bp | GGCTTTTCGACATTTCTGTATACCCAGCCAGTCCGTGGAACTCTCTaGAGCTGCCCAACTAGACGCAGAAAACGCAACAGCCCGGCTCCA | + |
|
Preference number: 6 (lower is better) Translates to: GFSTFLYTQPVRGTL*SCPTRRRKRNSPAP Trigger: TGGAGCCGGGCTGTTGCGTTTTCTGCGTCTAGTTGGGCAGCTCAAGAGAGTTCCACGGACTGGCTGGGTATACAGAAATGTCGAAAAGCC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000000304.14 |
||
| CDS TCA 72 bp | CATTTCTGTATACCCAGCCAGTCCGTGGAACTCTCTTaGGCTGCCCAACTAGACGCAGAAAACGCAACAGCC | + |
|
Preference number: 6 (lower is better) Translates to: HFCIPSQSVELS*AAQLDAENATA Trigger: GGCTGTTGCGTTTTCTGCGTCTAGTTGGGCAGCTCAAGAGAGTTCCACGGACTGGCTGGGTATACAGAAATG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000000304.14 |
||
| CDS CAA 72 bp | ACATTTCTGTATACCCAGCCAGTCCGTGGAACTCTCTaGAGCTGCCCAACTAGACGCAGAAAACGCAACAGC | + |
|
Preference number: 6 (lower is better) Translates to: TFLYTQPVRGTL*SCPTRRRKRNS Trigger: GCTGTTGCGTTTTCTGCGTCTAGTTGGGCAGCTCAAGAGAGTTCCACGGACTGGCTGGGTATACAGAAATGT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000000304.14 |
||
| CDS TCA 72 bp | CTGGTCACCATGGCCATAACTGCCATCCGGTACATGTaGTCTGACACGCTTTCTGGCTTTTCGACATTTCTG | + |
|
Preference number: 6 (lower is better) Translates to: LVTMAITAIRYM*SDTLSGFSTFL Trigger: CAGAAATGTCGAAAAGCCAGAAAGCGTGTCAGATCACATGTACCGGATGGCAGTTATGGCCATGGTGACCAG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000000304.14 ENSMUST00000159194.3 |
||
| CDS TCA 72 bp | GGTGCTATGTCCCCAACGATGCATTCTGCCATATCGTaGACCAGGGCTAGGCGTATACATCTATCCTTGTTA | + |
|
Preference number: 6 (lower is better) Translates to: GAMSPTMHSAIS*TRARRIHLSLL Trigger: TAACAAGGATAGATGTATACGCCTAGCCCTGGTTCACGATATGGCAGAATGCATCGTTGGGGACATAGCACC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000000304.14 ENSMUST00000159194.3 |
||
| CDS GCA 72 bp | CCTGTGTTTCTCTTCTTTAGGGATGTTATCTGCGGGTaGTATGTCCCCAACGATGCATTCTGCCATATCGTG | + |
|
Preference number: 6 (lower is better) Translates to: PVFLFFRDVICG*YVPNDAFCHIV Trigger: CACGATATGGCAGAATGCATCGTTGGGGACATAGCACCCGCAGATAACATCCCTAAAGAAGAGAAACACAGG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000000304.14 ENSMUST00000159194.3 |
||
| CDS TCA 72 bp | CACCATGGCCATAACTGCCATCCGGTACATGTGATCTaGCACGCTTTCTGGCTTTTCGACATTTCTGTATAC | + |
|
Preference number: 6 (lower is better) Translates to: HHGHNCHPVHVI*HAFWLFDISVY Trigger: GTATACAGAAATGTCGAAAAGCCAGAAAGCGTGTCAGATCACATGTACCGGATGGCAGTTATGGCCATGGTG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000000304.14 ENSMUST00000159194.3 |
||
| CDS TCA 72 bp | TCCAGCTGCTTCACGAATTTGGCTTCTTCGCTAGACTaGGTCTCATACTCTTCCCAGAGTTCATATAGCTCC | + |
|
Preference number: 6 (lower is better) Translates to: SSCFTNLASSLD*VSYSSQSSYSS Trigger: GGAGCTATATGAACTCTGGGAAGAGTATGAGACTCAGTCTAGCGAAGAAGCCAAATTCGTGAAGCAGCTGGA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000000304.14 |
||