Pregenerated sensors for HDAC8 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000067567Ensembl transcript IDs: ENSMUST00000087916.11, ENSMUST00000154872.8
Found 79 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | TGTGATAGTACTTCTCATCCTGGATGCCATCCTGAATGGGCACATTaGCACTGTAGTACCGTCCTTTCCCCAGGCCAACATCAGACATGT | + |
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Preference number: 1 (lower is better) Translates to: CDSTSHPGCHPEWAH*HCSTVLSPGQHQTC Trigger: ACATGTCTGATGTTGGCCTGGGGAAAGGACGGTACTACAGTGTCAATGTGCCCATTCAGGATGGCATCCAGGATGAGAAGTACTATCACA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000154872.8 |
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| 3UTR-3UTR TCA 90 bp | ATCCTGAATGGGCACATTGACACTGTAGTACCGTCCTTTCCCCAGGCCAACATCCCAGGACAGCATCATTaGGATAACAGAAACCAGATG | + |
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Preference number: 2 (lower is better) Translates to: ILNGHIDTVVPSFPQANIPGQHH*DNRNQM Trigger: CATCTGGTTTCTGTTATCTCAATGATGCTGTCCTGG...GATGTTGGCCTGGGGAAAGGACGGTACTACAGTGTCAATGTGCCCATTCAGGAT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000154872.8 |
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| 3UTR-3UTR GCA 90 bp | CCAAATTTCCCCTGCAGTCACAAATTCCACAAACCGCTTGCATCAACACACTGTCTTCATTATAGGCACTaGTGCCCAGCTCTGGGAACC | + |
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Preference number: 2 (lower is better) Translates to: PNFPCSHKFHKPLASTHCLHYRH*CPALGT Trigger: GGTTCCCAGAGCTGGGCAGCAGTGCCTATAATGAAG...ACAGTGTGTTGATGCAAGCGGTTTGTGGAATTTGTGACTGCAGGGGAAATTTGG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000087916.11 |
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| 3UTR-3UTR CCA 90 bp | AATCCTGGGGAGAACTTGTGCAGGGACACAGTCATAACCTTCGATGTAAAACTGCCGTCAATCAGGCACTaGGCAGCTGTGATTGTACCT | + |
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Preference number: 2 (lower is better) Translates to: NPGENLCRDTVITFDVKLPSIRH*AAVIVP Trigger: AGGTACAATCACAGCTGCCCAGTGCCTGATTGACGG...CAGTTTTACATCGAAGGTTATGACTGTGTCCCTGCACAAGTTCTCCCCAGGATT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000154872.8 |
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| 3UTR-3UTR CCA 90 bp | TTTCCCCTGCAGTCACAAATTCCACAAACCGCTTGCATCAACACACTGTCTTCAACTGCTGCCCAGCTCTaGGAACCTGATCTCTTTTTG | + |
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Preference number: 2 (lower is better) Translates to: FPLQSQIPQTACINTLSSTAAQL*EPDLFL Trigger: CAAAAAGAGATCAGGTTCCCAGAGCTGGGCAGCAGT...TGAAGACAGTGTGTTGATGCAAGCGGTTTGTGGAATTTGTGACTGCAGGGGAAA 48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000087916.11 |
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| 3UTR-3UTR TCA 90 bp | CATGGTGTAGATCCAAATCCACGTAGAGAATACGGTCAAATTTCCGTCGCAATCACCCTCCAGACCAGTTaGTGGCTACTTTACACTTCC | + |
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Preference number: 2 (lower is better) Translates to: HGVDPNPRREYGQISVAITLQTS*WLLYTS Trigger: GGAAGTGTAAAGTAGCCATCAACTGGTCTGGAGGGT...GATTGCGACGGAAATTTGACCGTATTCTCTACGTGGATTTGGATCTACACCATG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000154872.8 |
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| 3UTR-3UTR GCA 90 bp | CAGTTGATGGCTACTTTACACTTCCCGTCAATCAGGCACTGGGCAGCTGTGATTTCCTCCTATAGCTGCTaGATAGTCAAATATCCCTTC | + |
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Preference number: 2 (lower is better) Translates to: QLMATLHFPSIRHWAAVISSYSC*IVKYPF Trigger: GAAGGGATATTTGACTATGCAGCAGCTATAGGAGGA...AATCACAGCTGCCCAGTGCCTGATTGACGGGAAGTGTAAAGTAGCCATCAACTG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000154872.8 |
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| 3UTR CAA 90 bp | AATTTCTTCCAAATTTCCCCTGCAGTCACAAATTCCACAAACCGCTaGCATCAACACACTGTCTTCATTATAGGCACTGCTGCCCAGCTC | + |
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Preference number: 2 (lower is better) Translates to: NFFQISPAVTNSTNR*HQHTVFIIGTAAQL Trigger: GAGCTGGGCAGCAGTGCCTATAATGAAGACAGTGTGTTGATGCAAGCGGTTTGTGGAATTTGTGACTGCAGGGGAAATTTGGAAGAAATT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000087916.11 |
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| 3UTR-3UTR GCA 90 bp | AATCCTGGGGAGAACTTGTGCAGGGACACAGTCATAACCTTCGATGTAAAACTGACCTCCTCCTATAGCTaGTGCATAGTCAAATATCCC | + |
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Preference number: 2 (lower is better) Translates to: NPGENLCRDTVITFDVKLTSSYS*CIVKYP Trigger: GGGATATTTGACTATGCAGCAGCTATAGGAGGAGGT...CAGTTTTACATCGAAGGTTATGACTGTGTCCCTGCACAAGTTCTCCCCAGGATT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000154872.8 |
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| 3UTR GCA 72 bp | GCACTGGGCAGCTGTGATTGTACCTCCTCCTATAGCTaGTGCATAGTCAAATATCCCTTCTGTGGCTGGGCA | + |
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Preference number: 3 (lower is better) Translates to: ALGSCDCTSSYS*CIVKYPFCGWA Trigger: TGCCCAGCCACAGAAGGGATATTTGACTATGCAGCAGCTATAGGAGGAGGTACAATCACAGCTGCCCAGTGC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000154872.8 |
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| 3UTR TCA 72 bp | ACTTCTCATCCTGGATGCCATCCTGAATGGGCACATTaGCACTGTAGTACCGTCCTTTCCCCAGGCCAACAT | + |
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Preference number: 3 (lower is better) Translates to: TSHPGCHPEWAH*HCSTVLSPGQH Trigger: ATGTTGGCCTGGGGAAAGGACGGTACTACAGTGTCAATGTGCCCATTCAGGATGGCATCCAGGATGAGAAGT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000154872.8 |
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| 3UTR CCA 72 bp | TTGATGGCTACTTTACACTTCCCGTCAATCAGGCACTaGGCAGCTGTGATTGTACCTCCTCCTATAGCTGCT | + |
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Preference number: 3 (lower is better) Translates to: LMATLHFPSIRH*AAVIVPPPIAA Trigger: AGCAGCTATAGGAGGAGGTACAATCACAGCTGCCCAGTGCCTGATTGACGGGAAGTGTAAAGTAGCCATCAA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000154872.8 |
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| 3UTR TCA 72 bp | CATCTTTCTTTGCATGATGCCACCCTCCAGACCAGTTaGTGGCTACTTTACACTTCCCGTCAATCAGGCACT | + |
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Preference number: 3 (lower is better) Translates to: HLSLHDATLQTS*WLLYTSRQSGT Trigger: AGTGCCTGATTGACGGGAAGTGTAAAGTAGCCATCAACTGGTCTGGAGGGTGGCATCATGCAAAGAAAGATG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000154872.8 |
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| 3UTR-3UTR CAA 90 bp | GGTACACTTCTTTTAGTACACTTTCACAGATGTGATAGTACTTCTCATCCTGGAAATCCTGGGGAGAACTaGTGCAGGGACACAGTCATA | + |
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Preference number: 3 (lower is better) Translates to: GTLLLVHFHRCDSTSHPGNPGEN*CRDTVI Trigger: TATGACTGTGTCCCTGCACAAGTTCTCCCCAGGATT...TCCAGGATGAGAAGTACTATCACATCTGTGAAAGTGTACTAAAAGAAGTGTACC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000154872.8 |
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| CDS-3UTR CCA 90 bp | TCCTTACCTCCCAGTCTGCTGATACCCCTCCCCCACAGGTCTCTATCTAAATGGGGGCTCATTGCGGTCTaGCCGGCAGCTTGGCGTGAT | + |
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Preference number: 4 (lower is better) Translates to: SLPPSLLIPLPHRSLSKWGLIAV*PAAWRD Trigger: ATCACGCCAAGCTGCCGGCCAGACCGCAATGAGCCC...CCATTTAGATAGAGACCTGTGGGGGAGGGGTATCAGCAGACTGGGAGGTAAGGA 58% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENSMUST00000087916.11 |
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| CDS-3UTR CCA 90 bp | TCCTTACCTCCCAGTCTGCTGATACCCCTCCCCCACAGGTCTCTATCTAAATGGCATCAGTGTGGAAGGTaGCCATCTCCTCCATGGAGG | + |
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Preference number: 4 (lower is better) Translates to: SLPPSLLIPLPHRSLSKWHQCGR*PSPPWR Trigger: CCTCCATGGAGGAGATGGCCACCTTCCACACTGATG...CCATTTAGATAGAGACCTGTGGGGGAGGGGTATCAGCAGACTGGGAGGTAAGGA 54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000087916.11 |
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| CDS-3UTR TCA 90 bp | TCCTTACCTCCCAGTCTGCTGATACCCCTCCCCCACAGGTCTCTATCTAAATGGTCCTGGATGCCATCCTaGATGGGCACATTGACACTG | + |
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Preference number: 4 (lower is better) Translates to: SLPPSLLIPLPHRSLSKWSWMPS*MGTLTL Trigger: CAGTGTCAATGTGCCCATTCAGGATGGCATCCAGGA...CCATTTAGATAGAGACCTGTGGGGGAGGGGTATCAGCAGACTGGGAGGTAAGGA 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000087916.11 |
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| CDS-3UTR GCA 90 bp | CCAAATTTCCCCTGCAGTCACAAATTCCACAAACCGCTTGCATCAACACACTGTTTCGGTGGGGCTCATTaGGGTCTGGCCGGCAGCTTG | + |
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Preference number: 4 (lower is better) Translates to: PNFPCSHKFHKPLASTHCFGGAH*GLAGSL Trigger: CAAGCTGCCGGCCAGACCGCAATGAGCCCCACCGAA...ACAGTGTGTTGATGCAAGCGGTTTGTGGAATTTGTGACTGCAGGGGAAATTTGG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000087916.11 |
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| CDS-3UTR CCA 90 bp | TCCTTACCTCCCAGTCTGCTGATACCCCTCCCCCACAGGTCTCTATCTAAATGGCCGTCAATCAGGCACTaGGCAGCTGTGATTGTACCT | + |
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Preference number: 4 (lower is better) Translates to: SLPPSLLIPLPHRSLSKWPSIRH*AAVIVP Trigger: AGGTACAATCACAGCTGCCCAGTGCCTGATTGACGG...CCATTTAGATAGAGACCTGTGGGGGAGGGGTATCAGCAGACTGGGAGGTAAGGA 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000087916.11 |
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| CDS-3UTR TCA 90 bp | GTTCCTGGGAAAAATCCTGGGGAGAACTTGTGCAGGGACACAGTCATAACCTTCGGGAGTCGCAGATGCTaGCATACTCGGGACTGTAAA | + |
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Preference number: 4 (lower is better) Translates to: VPGKNPGENLCRDTVITFGSRRC*HTRDCK Trigger: TTTACAGTCCCGAGTATGTCAGCATCTGCGACTCCC...GAAGGTTATGACTGTGTCCCTGCACAAGTTCTCCCCAGGATTTTTCCCAGGAAC 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000154872.8 |
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| CDS-3UTR GCA 90 bp | TCCTTACCTCCCAGTCTGCTGATACCCCTCCCCCACAGGTCTCTATCTAAATGGACTTCTCATCCTGGATaGCATCCTGAATGGGCACAT | + |
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Preference number: 4 (lower is better) Translates to: SLPPSLLIPLPHRSLSKWTSHPG*HPEWAH Trigger: ATGTGCCCATTCAGGATGGCATCCAGGATGAGAAGT...CCATTTAGATAGAGACCTGTGGGGGAGGGGTATCAGCAGACTGGGAGGTAAGGA 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000087916.11 |
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| CDS-3UTR CCA 90 bp | TCCTTACCTCCCAGTCTGCTGATACCCCTCCCCCACAGGTCTCTATCTAAATGGCCATGGAGGCCACTTTaGGCTTCACTATCCTCATTT | + |
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Preference number: 4 (lower is better) Translates to: SLPPSLLIPLPHRSLSKWPWRPL*ASLSSF Trigger: AAATGAGGATAGTGAAGCCCAAAGTGGCCTCCATGG...CCATTTAGATAGAGACCTGTGGGGGAGGGGTATCAGCAGACTGGGAGGTAAGGA 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000087916.11 |
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| CDS-3UTR CCA 90 bp | TCCTTACCTCCCAGTCTGCTGATACCCCTCCCCCACAGGTCTCTATCTAAATGGCATGTCACCTGTTCCTaGGAAAAATCCTGGGGAGAA | + |
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Preference number: 4 (lower is better) Translates to: SLPPSLLIPLPHRSLSKWHVTCS*EKSWGE Trigger: TTCTCCCCAGGATTTTTCCCAGGAACAGGTGACATG...CCATTTAGATAGAGACCTGTGGGGGAGGGGTATCAGCAGACTGGGAGGTAAGGA 51% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt. Matches the following 1 transcripts: ENSMUST00000087916.11 |
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| CDS-3UTR TCA 90 bp | TTTCCCCTGCAGTCACAAATTCCACAAACCGCTTGCATCAACACACTGTCTTCAGCGTTTTCCCTAGGATaGCCCCGGTCAAGTATGTCC | + |
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Preference number: 4 (lower is better) Translates to: FPLQSQIPQTACINTLSSAFSLG*PRSSMS Trigger: GGACATACTTGACCGGGGTCATCCTAGGGAAAACGC...TGAAGACAGTGTGTTGATGCAAGCGGTTTGTGGAATTTGTGACTGCAGGGGAAA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000087916.11 |
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| CDS-3UTR GCA 90 bp | TCCTTACCTCCCAGTCTGCTGATACCCCTCCCCCACAGGTCTCTATCTAAATGGTGCTTCATCTTTCTTTaGATGATGCCACCCTCCAGA | + |
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Preference number: 4 (lower is better) Translates to: SLPPSLLIPLPHRSLSKWCFIFL*MMPPSR Trigger: TCTGGAGGGTGGCATCATGCAAAGAAAGATGAAGCA...CCATTTAGATAGAGACCTGTGGGGGAGGGGTATCAGCAGACTGGGAGGTAAGGA 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000087916.11 |
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| CDS-3UTR TCA 90 bp | TTCTTCCAAATTTCCCCTGCAGTCACAAATTCCACAAACCGCTTGCATCAACACGCCGGCAGCTTGGCGTaGTTTCCAGCACATAATCAG | + |
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Preference number: 4 (lower is better) Translates to: FFQISPAVTNSTNRLHQHAGSLA*FPAHNQ Trigger: CTGATTATGTGCTGGAAATCACGCCAAGCTGCCGGC...GTGTTGATGCAAGCGGTTTGTGGAATTTGTGACTGCAGGGGAAATTTGGAAGAA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000087916.11 |
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| CDS-3UTR GCA 90 bp | TCCAAATTTCCCCTGCAGTCACAAATTCCACAAACCGCTTGCATCAACACACTGCCTGGGGAGAACTTGTaGAGGGACACAGTCATAACC | + |
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Preference number: 4 (lower is better) Translates to: SKFPLQSQIPQTACINTLPGENL*RDTVIT Trigger: GGTTATGACTGTGTCCCTGCACAAGTTCTCCCCAGG...CAGTGTGTTGATGCAAGCGGTTTGTGGAATTTGTGACTGCAGGGGAAATTTGGA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000087916.11 |
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| CDS-3UTR CCA 90 bp | TTCTTCCAAATTTCCCCTGCAGTCACAAATTCCACAAACCGCTTGCATCAACACATTTGCTGGATTCGGTaGGGCTCATTGCGGTCTGGC | + |
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Preference number: 4 (lower is better) Translates to: FFQISPAVTNSTNRLHQHICWIR*GSLRSG Trigger: GCCAGACCGCAATGAGCCCCACCGAATCCAGCAAAT...GTGTTGATGCAAGCGGTTTGTGGAATTTGTGACTGCAGGGGAAATTTGGAAGAA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000087916.11 |
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| CDS-3UTR TCA 90 bp | TTCTTCCAAATTTCCCCTGCAGTCACAAATTCCACAAACCGCTTGCATCAACACGGGAGTCGCAGATGCTaGCATACTCGGGACTGTAAA | + |
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Preference number: 4 (lower is better) Translates to: FFQISPAVTNSTNRLHQHGSRRC*HTRDCK Trigger: TTTACAGTCCCGAGTATGTCAGCATCTGCGACTCCC...GTGTTGATGCAAGCGGTTTGTGGAATTTGTGACTGCAGGGGAAATTTGGAAGAA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000087916.11 |
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| CDS-3UTR CCA 90 bp | TTTCCCCTGCAGTCACAAATTCCACAAACCGCTTGCATCAACACACTGTCTTCATCCTGGGAAAAATCCTaGGGAGAACTTGTGCAGGGA | + |
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Preference number: 4 (lower is better) Translates to: FPLQSQIPQTACINTLSSSWEKS*GELVQG Trigger: TCCCTGCACAAGTTCTCCCCAGGATTTTTCCCAGGA...TGAAGACAGTGTGTTGATGCAAGCGGTTTGTGGAATTTGTGACTGCAGGGGAAA 48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000087916.11 |
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| CDS-3UTR CCA 90 bp | TTCTTCCAAATTTCCCCTGCAGTCACAAATTCCACAAACCGCTTGCATCAACACAGCAACGAGCCGTGTTaGCAAGGTTATAGCCTCCTC | + |
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Preference number: 4 (lower is better) Translates to: FFQISPAVTNSTNRLHQHSNEPC*QGYSLL Trigger: GAGGAGGCTATAACCTTGCCAACACGGCTCGTTGCT...GTGTTGATGCAAGCGGTTTGTGGAATTTGTGACTGCAGGGGAAATTTGGAAGAA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000087916.11 |
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| CDS-3UTR CCA 90 bp | ACAAATTCCACAAACCGCTTGCATCAACACACTGTCTTCATTATAGGCACTGCTGTCTGGCCGGCAGCTTaGCGTGATTTCCAGCACATA | + |
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Preference number: 4 (lower is better) Translates to: TNSTNRLHQHTVFIIGTAVWPAA*RDFQHI Trigger: TATGTGCTGGAAATCACGCCAAGCTGCCGGCCAGAC...AGCAGTGCCTATAATGAAGACAGTGTGTTGATGCAAGCGGTTTGTGGAATTTGT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000087916.11 |
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| CDS-3UTR TCA 90 bp | TTCTTCCAAATTTCCCCTGCAGTCACAAATTCCACAAACCGCTTGCATCAACACACCCTCCAGACCAGTTaGTGGCTACTTTACACTTCC | + |
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Preference number: 4 (lower is better) Translates to: FFQISPAVTNSTNRLHQHTLQTS*WLLYTS Trigger: GGAAGTGTAAAGTAGCCATCAACTGGTCTGGAGGGT...GTGTTGATGCAAGCGGTTTGTGGAATTTGTGACTGCAGGGGAAATTTGGAAGAA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000087916.11 |
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| CDS-3UTR TCA 90 bp | TTCTTCCAAATTTCCCCTGCAGTCACAAATTCCACAAACCGCTTGCATCAACACCCTGAATGGGCACATTaGCACTGTAGTACCGTCCTT | + |
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Preference number: 4 (lower is better) Translates to: FFQISPAVTNSTNRLHQHPEWAH*HCSTVL Trigger: AAGGACGGTACTACAGTGTCAATGTGCCCATTCAGG...GTGTTGATGCAAGCGGTTTGTGGAATTTGTGACTGCAGGGGAAATTTGGAAGAA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000087916.11 |
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| CDS-3UTR CCA 90 bp | CCAAATTTCCCCTGCAGTCACAAATTCCACAAACCGCTTGCATCAACACACTGTTCTATGGAGTCTGGATaGTCCTCATCACCTTCTTGG | + |
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Preference number: 4 (lower is better) Translates to: PNFPCSHKFHKPLASTHCSMESG*SSSPSW Trigger: CCAAGAAGGTGATGAGGACCATCCAGACTCCATAGA...ACAGTGTGTTGATGCAAGCGGTTTGTGGAATTTGTGACTGCAGGGGAAATTTGG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000087916.11 |
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| CDS-3UTR TCA 90 bp | AATTTCCCCTGCAGTCACAAATTCCACAAACCGCTTGCATCAACACACTGTCTTCATCACCTTCTTGGCTaGCTTTCTGGAGATGTTGCA | + |
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Preference number: 4 (lower is better) Translates to: NFPCSHKFHKPLASTHCLHHLLG*LSGDVA Trigger: TGCAACATCTCCAGAAAGTCAGCCAAGAAGGTGATG...AAGACAGTGTGTTGATGCAAGCGGTTTGTGGAATTTGTGACTGCAGGGGAAATT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000087916.11 |
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| CDS-3UTR TCA 90 bp | TTTCCCCTGCAGTCACAAATTCCACAAACCGCTTGCATCAACACACTGTCTTCAGCTGTGAAAAACTCATaGTCTGGGATCTCAGAGGAT | + |
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Preference number: 4 (lower is better) Translates to: FPLQSQIPQTACINTLSSAVKNS*SGISED Trigger: ATCCTCTGAGATCCCAGATCATGAGTTTTTCACAGC...TGAAGACAGTGTGTTGATGCAAGCGGTTTGTGGAATTTGTGACTGCAGGGGAAA 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000087916.11 |
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| CDS-3UTR GCA 90 bp | CAAATTTCCCCTGCAGTCACAAATTCCACAAACCGCTTGCATCAACACACTGTCACCTCCTCCTATAGCTaGTGCATAGTCAAATATCCC | + |
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Preference number: 4 (lower is better) Translates to: QISPAVTNSTNRLHQHTVTSSYS*CIVKYP Trigger: GGGATATTTGACTATGCAGCAGCTATAGGAGGAGGT...GACAGTGTGTTGATGCAAGCGGTTTGTGGAATTTGTGACTGCAGGGGAAATTTG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000087916.11 |
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| CDS-3UTR GCA 90 bp | CCGCTTGCATCAACACACTGTCTTCATTATAGGCACTGCTGCCCAGCTCTGGGAATAACAGAAACCAGATaGTTCATCTTTCTTTGCATG | + |
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Preference number: 4 (lower is better) Translates to: PLASTHCLHYRHCCPALGITETR*FIFLCM Trigger: CATGCAAAGAAAGATGAAGCATCTGGTTTCTGTTAT...TCCCAGAGCTGGGCAGCAGTGCCTATAATGAAGACAGTGTGTTGATGCAAGCGG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000087916.11 |
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| CDS-3UTR GCA 90 bp | CCGCTTGCATCAACACACTGTCTTCATTATAGGCACTGCTGCCCAGCTCTGGGAATAATCAGGACCATATaGTGTGAAAAACTCATGATC | + |
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Preference number: 4 (lower is better) Translates to: PLASTHCLHYRHCCPALGIIRTI*CEKLMI Trigger: GATCATGAGTTTTTCACAGCATATGGTCCTGATTAT...TCCCAGAGCTGGGCAGCAGTGCCTATAATGAAGACAGTGTGTTGATGCAAGCGG 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000087916.11 |
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| CDS-3UTR CCA 90 bp | TTTCCCCTGCAGTCACAAATTCCACAAACCGCTTGCATCAACACACTGTCTTCACAAATATCCCTTCTGTaGCTGGGCAGTCATAACCTA | + |
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Preference number: 4 (lower is better) Translates to: FPLQSQIPQTACINTLSSQISLL*LGSHNL Trigger: TAGGTTATGACTGCCCAGCCACAGAAGGGATATTTG...TGAAGACAGTGTGTTGATGCAAGCGGTTTGTGGAATTTGTGACTGCAGGGGAAA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000087916.11 |
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| 3UTR CAA 72 bp | ATGTCACCTGTTCCTGGGAAAAATCCTGGGGAGAACTaGTGCAGGGACACAGTCATAACCTTCGATGTAAAA | + |
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Preference number: 4 (lower is better) Translates to: MSPVPGKNPGEN*CRDTVITFDVK Trigger: TTTTACATCGAAGGTTATGACTGTGTCCCTGCACAAGTTCTCCCCAGGATTTTTCCCAGGAACAGGTGACAT 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000154872.8 |
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| CDS-3UTR CCA 90 bp | AATTTCCCCTGCAGTCACAAATTCCACAAACCGCTTGCATCAACACACTGTCTTTCTACACCATCTCCATaGTGTAGATCCAAATCCACG | + |
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Preference number: 4 (lower is better) Translates to: NFPCSHKFHKPLASTHCLSTPSP*CRSKST Trigger: CGTGGATTTGGATCTACACCATGGAGATGGTGTAGA...AAGACAGTGTGTTGATGCAAGCGGTTTGTGGAATTTGTGACTGCAGGGGAAATT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000087916.11 |
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| CDS-3UTR CCA 90 bp | AATTTCCCCTGCAGTCACAAATTCCACAAACCGCTTGCATCAACACACTGTCTTCTTGCCGATCCCCACTaGTGTCATATTAAAGGAACA | + |
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Preference number: 4 (lower is better) Translates to: NFPCSHKFHKPLASTHCLLADPH*CHIKGT Trigger: TGTTCCTTTAATATGACACCAGTGGGGATCGGCAAG...AAGACAGTGTGTTGATGCAAGCGGTTTGTGGAATTTGTGACTGCAGGGGAAATT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000087916.11 |
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| 3UTR CAA 72 bp | CAAATTTCCCCTGCAGTCACAAATTCCACAAACCGCTaGCATCAACACACTGTCTTCATTATAGGCACTGCT | + |
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Preference number: 4 (lower is better) Translates to: QISPAVTNSTNR*HQHTVFIIGTA Trigger: AGCAGTGCCTATAATGAAGACAGTGTGTTGATGCAAGCGGTTTGTGGAATTTGTGACTGCAGGGGAAATTTG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000087916.11 |
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| CDS-3UTR TCA 90 bp | ACAAATTCCACAAACCGCTTGCATCAACACACTGTCTTCATTATAGGCACTGCTCCAGGACAGCATCATTaGGATAACAGAAACCAGATG | + |
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Preference number: 4 (lower is better) Translates to: TNSTNRLHQHTVFIIGTAPGQHH*DNRNQM Trigger: CATCTGGTTTCTGTTATCTCAATGATGCTGTCCTGG...AGCAGTGCCTATAATGAAGACAGTGTGTTGATGCAAGCGGTTTGTGGAATTTGT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000087916.11 |
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| CDS-3UTR TCA 90 bp | ACAAATTCCACAAACCGCTTGCATCAACACACTGTCTTCATTATAGGCACTGCTCAGGACCATATGCTGTaGAAAACTCATGATCTGGGA | + |
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Preference number: 4 (lower is better) Translates to: TNSTNRLHQHTVFIIGTAQDHML*KTHDLG Trigger: TCCCAGATCATGAGTTTTTCACAGCATATGGTCCTG...AGCAGTGCCTATAATGAAGACAGTGTGTTGATGCAAGCGGTTTGTGGAATTTGT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000087916.11 |
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| CDS-3UTR GCA 90 bp | AATTTCCCCTGCAGTCACAAATTCCACAAACCGCTTGCATCAACACACTGTCTTTCCTCCTATAGCTGCTaGATAGTCAAATATCCCTTC | + |
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Preference number: 4 (lower is better) Translates to: NFPCSHKFHKPLASTHCLSSYSC*IVKYPF Trigger: GAAGGGATATTTGACTATGCAGCAGCTATAGGAGGA...AAGACAGTGTGTTGATGCAAGCGGTTTGTGGAATTTGTGACTGCAGGGGAAATT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000087916.11 |
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| CDS-3UTR CCA 90 bp | CCTGCAGTCACAAATTCCACAAACCGCTTGCATCAACACACTGTCTTCATTATATCCTCATCACCTTCTTaGCTGACTTTCTGGAGATGT | + |
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Preference number: 4 (lower is better) Translates to: PAVTNSTNRLHQHTVFIISSSPS*LTFWRC Trigger: ACATCTCCAGAAAGTCAGCCAAGAAGGTGATGAGGA...TATAATGAAGACAGTGTGTTGATGCAAGCGGTTTGTGGAATTTGTGACTGCAGG 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000087916.11 |
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| CDS-3UTR CCA 90 bp | TTCTTCCAAATTTCCCCTGCAGTCACAAATTCCACAAACCGCTTGCATCAACACATATTCTATGGAGTCTaGATGGTCCTCATCACCTTC | + |
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Preference number: 4 (lower is better) Translates to: FFQISPAVTNSTNRLHQHIFYGV*MVLITF Trigger: GAAGGTGATGAGGACCATCCAGACTCCATAGAATAT...GTGTTGATGCAAGCGGTTTGTGGAATTTGTGACTGCAGGGGAAATTTGGAAGAA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000087916.11 |
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| CDS-3UTR CCA 90 bp | CCTGCAGTCACAAATTCCACAAACCGCTTGCATCAACACACTGTCTTCATTATACTAGTCCATATTCTATaGAGTCTGGATGGTCCTCAT | + |
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Preference number: 4 (lower is better) Translates to: PAVTNSTNRLHQHTVFIILVHIL*SLDGPH Trigger: ATGAGGACCATCCAGACTCCATAGAATATGGACTAG...TATAATGAAGACAGTGTGTTGATGCAAGCGGTTTGTGGAATTTGTGACTGCAGG 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000087916.11 |
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| CDS TCA 90 bp | CCATACTGGCCCGTTTGGGGACCTTCACAAGGGAGTCGCAGATGCTaGCATACTCGGGACTGTAAATATAAACCGGGGGTAGTGAATGCC | + |
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Preference number: 5 (lower is better) Translates to: PYWPVWGPSQGSRRC*HTRDCKYKPGVVNA Trigger: GGCATTCACTACCCCCGGTTTATATTTACAGTCCCGAGTATGTCAGCATCTGCGACTCCCTTGTGAAGGTCCCCAAACGGGCCAGTATGG 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000087916.11 ENSMUST00000154872.8 |
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| CDS CCA 90 bp | GATGTAGTTGAGGATTTGCTGGATTCGGTGGGGCTCATTGCGGTCTaGCCGGCAGCTTGGCGTGATTTCCAGCACATAATCAGGACCATA | + |
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Preference number: 5 (lower is better) Translates to: DVVEDLLDSVGLIAV*PAAWRDFQHIIRTI Trigger: TATGGTCCTGATTATGTGCTGGAAATCACGCCAAGCTGCCGGCCAGACCGCAATGAGCCCCACCGAATCCAGCAAATCCTCAACTACATC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000087916.11 |
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| CDS-3UTR CAA 90 bp | TTTCCCCTGCAGTCACAAATTCCACAAACCGCTTGCATCAACACACTGTCTTCAATTCGGTGGGGCTCATaGCGGTCTGGCCGGCAGCTT | + |
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Preference number: 5 (lower is better) Translates to: FPLQSQIPQTACINTLSSIRWGS*RSGRQL Trigger: AAGCTGCCGGCCAGACCGCAATGAGCCCCACCGAAT...TGAAGACAGTGTGTTGATGCAAGCGGTTTGTGGAATTTGTGACTGCAGGGGAAA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000087916.11 |
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| CDS CCA 90 bp | AGGCATCAGTGTGGAAGGTGGCCATCTCCTCCATGGAGGCCACTTTaGGCTTCACTATCCTCATTTGTTTATGCAGGGCATAGGCTTCGA | + |
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Preference number: 5 (lower is better) Translates to: RHQCGRWPSPPWRPL*ASLSSFVYAGHRLR Trigger: TCGAAGCCTATGCCCTGCATAAACAAATGAGGATAGTGAAGCCCAAAGTGGCCTCCATGGAGGAGATGGCCACCTTCCACACTGATGCCT 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000087916.11 |
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| CDS CCA 90 bp | GATTTGCTGGATTCGGTGGGGCTCATTGCGGTCTGGCCGGCAGCTTaGCGTGATTTCCAGCACATAATCAGGACCATATGCTGTGAAAAA | + |
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Preference number: 5 (lower is better) Translates to: DLLDSVGLIAVWPAA*RDFQHIIRTICCEK Trigger: TTTTTCACAGCATATGGTCCTGATTATGTGCTGGAAATCACGCCAAGCTGCCGGCCAGACCGCAATGAGCCCCACCGAATCCAGCAAATC 52% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000087916.11 |
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| CDS-3UTR CAA 90 bp | CCGCTTGCATCAACACACTGTCTTCATTATAGGCACTGCTGCCCAGCTCTGGGACACCCTCCAGACCAGTaGATGGCTACTTTACACTTC | + |
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Preference number: 5 (lower is better) Translates to: PLASTHCLHYRHCCPALGHPPDQ*MATLHF Trigger: GAAGTGTAAAGTAGCCATCAACTGGTCTGGAGGGTG...TCCCAGAGCTGGGCAGCAGTGCCTATAATGAAGACAGTGTGTTGATGCAAGCGG 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000087916.11 |
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| CDS GCA 90 bp | GTCAATCAGGCACTGGGCAGCTGTGATTGTACCTCCTCCTATAGCTaGTGCATAGTCAAATATCCCTTCTGTGGCTGGGCAGTCATAACC | + |
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Preference number: 5 (lower is better) Translates to: VNQALGSCDCTSSYS*CIVKYPFCGWAVIT Trigger: GGTTATGACTGCCCAGCCACAGAAGGGATATTTGACTATGCAGCAGCTATAGGAGGAGGTACAATCACAGCTGCCCAGTGCCTGATTGAC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000087916.11 |
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| CDS-3UTR CAA 90 bp | AATCCTGGGGAGAACTTGTGCAGGGACACAGTCATAACCTTCGATGTAAAACTGAGTGAATGCCCACTGTaGGCGGGTTCCTCTGGCATC | + |
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Preference number: 5 (lower is better) Translates to: NPGENLCRDTVITFDVKLSECPL*AGSSGI Trigger: GATGCCAGAGGAACCCGCCAACAGTGGGCATTCACT...CAGTTTTACATCGAAGGTTATGACTGTGTCCCTGCACAAGTTCTCCCCAGGATT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000154872.8 |
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| CDS-3UTR CAA 90 bp | TCCTTACCTCCCAGTCTGCTGATACCCCTCCCCCACAGGTCTCTATCTAAATGGGACTTTCTGGAGATGTaGCAGATAGGCATCAGTGTG | + |
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Preference number: 5 (lower is better) Translates to: SLPPSLLIPLPHRSLSKWDFLEM*QIGISV Trigger: CACACTGATGCCTATCTGCAACATCTCCAGAAAGTC...CCATTTAGATAGAGACCTGTGGGGGAGGGGTATCAGCAGACTGGGAGGTAAGGA 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000087916.11 |
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| CDS TCA 90 bp | GTCCATATTCTATGGAGTCTGGATGGTCCTCATCACCTTCTTGGCTaGCTTTCTGGAGATGTTGCAGATAGGCATCAGTGTGGAAGGTGG | + |
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Preference number: 5 (lower is better) Translates to: VHILWSLDGPHHLLG*LSGDVADRHQCGRW Trigger: CCACCTTCCACACTGATGCCTATCTGCAACATCTCCAGAAAGTCAGCCAAGAAGGTGATGAGGACCATCCAGACTCCATAGAATATGGAC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000087916.11 |
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| CDS-3UTR CAA 90 bp | ACAAATTCCACAAACCGCTTGCATCAACACACTGTCTTCATTATAGGCACTGCTAGTGAATGCCCACTGTaGGCGGGTTCCTCTGGCATC | + |
|
Preference number: 5 (lower is better) Translates to: TNSTNRLHQHTVFIIGTASECPL*AGSSGI Trigger: GATGCCAGAGGAACCCGCCAACAGTGGGCATTCACT...AGCAGTGCCTATAATGAAGACAGTGTGTTGATGCAAGCGGTTTGTGGAATTTGT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000087916.11 |
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| CDS-3UTR CAA 90 bp | TTTCCCCTGCAGTCACAAATTCCACAAACCGCTTGCATCAACACACTGTCTTCAAATCCTGGGGAGAACTaGTGCAGGGACACAGTCATA | + |
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Preference number: 5 (lower is better) Translates to: FPLQSQIPQTACINTLSSNPGEN*CRDTVI Trigger: TATGACTGTGTCCCTGCACAAGTTCTCCCCAGGATT...TGAAGACAGTGTGTTGATGCAAGCGGTTTGTGGAATTTGTGACTGCAGGGGAAA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000087916.11 |
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| CDS-3UTR CAA 90 bp | CCAAATTTCCCCTGCAGTCACAAATTCCACAAACCGCTTGCATCAACACACTGTCTCCTAAAATCAGAGTaGCCAGCTGCCACTGTAGGA | + |
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Preference number: 5 (lower is better) Translates to: PNFPCSHKFHKPLASTHCLLKSE*PAATVG Trigger: TCCTACAGTGGCAGCTGGCAACTCTGATTTTAGGAG...ACAGTGTGTTGATGCAAGCGGTTTGTGGAATTTGTGACTGCAGGGGAAATTTGG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000087916.11 |
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| CDS-3UTR CAA 90 bp | AATTTCCCCTGCAGTCACAAATTCCACAAACCGCTTGCATCAACACACTGTCTTGATGTAGTTGAGGATTaGCTGGATTCGGTGGGGCTC | + |
|
Preference number: 5 (lower is better) Translates to: NFPCSHKFHKPLASTHCLDVVED*LDSVGL Trigger: GAGCCCCACCGAATCCAGCAAATCCTCAACTACATC...AAGACAGTGTGTTGATGCAAGCGGTTTGTGGAATTTGTGACTGCAGGGGAAATT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000087916.11 |
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| CDS-3UTR CAA 90 bp | CCTGCAGTCACAAATTCCACAAACCGCTTGCATCAACACACTGTCTTCATTATATCCATGGAGGCCACTTaGGGCTTCACTATCCTCATT | + |
|
Preference number: 5 (lower is better) Translates to: PAVTNSTNRLHQHTVFIISMEAT*GFTILI Trigger: AATGAGGATAGTGAAGCCCAAAGTGGCCTCCATGGA...TATAATGAAGACAGTGTGTTGATGCAAGCGGTTTGTGGAATTTGTGACTGCAGG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000087916.11 |
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| CDS-3UTR CAA 90 bp | TTCTTCCAAATTTCCCCTGCAGTCACAAATTCCACAAACCGCTTGCATCAACACCTTCACTATCCTCATTaGTTTATGCAGGGCATAGGC | + |
|
Preference number: 5 (lower is better) Translates to: FFQISPAVTNSTNRLHQHLHYPH*FMQGIG Trigger: GCCTATGCCCTGCATAAACAAATGAGGATAGTGAAG...GTGTTGATGCAAGCGGTTTGTGGAATTTGTGACTGCAGGGGAAATTTGGAAGAA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000087916.11 |
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| CDS CCA 72 bp | GATTCGGTGGGGCTCATTGCGGTCTGGCCGGCAGCTTaGCGTGATTTCCAGCACATAATCAGGACCATATGC | + |
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Preference number: 6 (lower is better) Translates to: DSVGLIAVWPAA*RDFQHIIRTIC Trigger: GCATATGGTCCTGATTATGTGCTGGAAATCACGCCAAGCTGCCGGCCAGACCGCAATGAGCCCCACCGAATC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000087916.11 |
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| CDS CCA 72 bp | GAGGATTTGCTGGATTCGGTGGGGCTCATTGCGGTCTaGCCGGCAGCTTGGCGTGATTTCCAGCACATAATC | + |
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Preference number: 6 (lower is better) Translates to: EDLLDSVGLIAV*PAAWRDFQHII Trigger: GATTATGTGCTGGAAATCACGCCAAGCTGCCGGCCAGACCGCAATGAGCCCCACCGAATCCAGCAAATCCTC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000087916.11 |
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| CDS TCA 72 bp | GATCTGGGATCTCAGAGGATAGCGTTTTCCCTAGGATaGCCCCGGTCAAGTATGTCCAGCAACGAGCCGTGT | + |
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Preference number: 6 (lower is better) Translates to: DLGSQRIAFSLG*PRSSMSSNEPC Trigger: ACACGGCTCGTTGCTGGACATACTTGACCGGGGTCATCCTAGGGAAAACGCTATCCTCTGAGATCCCAGATC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000087916.11 |
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| CDS TCA 72 bp | CCCGTTTGGGGACCTTCACAAGGGAGTCGCAGATGCTaGCATACTCGGGACTGTAAATATAAACCGGGGGTA | + |
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Preference number: 6 (lower is better) Translates to: PVWGPSQGSRRC*HTRDCKYKPGV Trigger: TACCCCCGGTTTATATTTACAGTCCCGAGTATGTCAGCATCTGCGACTCCCTTGTGAAGGTCCCCAAACGGG 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000087916.11 ENSMUST00000154872.8 |
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| CDS GCA 72 bp | CTGGGCAGCTGTGATTGTACCTCCTCCTATAGCTGCTaGATAGTCAAATATCCCTTCTGTGGCTGGGCAGTC | + |
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Preference number: 6 (lower is better) Translates to: LGSCDCTSSYSC*IVKYPFCGWAV Trigger: GACTGCCCAGCCACAGAAGGGATATTTGACTATGCAGCAGCTATAGGAGGAGGTACAATCACAGCTGCCCAG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000087916.11 |
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| CDS CAA 72 bp | CACATGCTTCAGATTCCCTTTGATGTAGTTGAGGATTaGCTGGATTCGGTGGGGCTCATTGCGGTCTGGCCG | + |
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Preference number: 6 (lower is better) Translates to: HMLQIPFDVVED*LDSVGLIAVWP Trigger: CGGCCAGACCGCAATGAGCCCCACCGAATCCAGCAAATCCTCAACTACATCAAAGGGAATCTGAAGCATGTG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000087916.11 |
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| CDS CAA 90 bp | GTCTGGATGGTCCTCATCACCTTCTTGGCTGACTTTCTGGAGATGTaGCAGATAGGCATCAGTGTGGAAGGTGGCCATCTCCTCCATGGA | + |
|
Preference number: 6 (lower is better) Translates to: VWMVLITFLADFLEM*QIGISVEGGHLLHG Trigger: TCCATGGAGGAGATGGCCACCTTCCACACTGATGCCTATCTGCAACATCTCCAGAAAGTCAGCCAAGAAGGTGATGAGGACCATCCAGAC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000087916.11 |
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| CDS CAA 90 bp | GGCCATCTCCTCCATGGAGGCCACTTTGGGCTTCACTATCCTCATTaGTTTATGCAGGGCATAGGCTTCGATCAGAGAGTGGACCATACT | + |
|
Preference number: 6 (lower is better) Translates to: GHLLHGGHFGLHYPH*FMQGIGFDQRVDHT Trigger: AGTATGGTCCACTCTCTGATCGAAGCCTATGCCCTGCATAAACAAATGAGGATAGTGAAGCCCAAAGTGGCCTCCATGGAGGAGATGGCC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000087916.11 |
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| CDS CAA 72 bp | GTTGCCAGCTGCCACTGTAGGACATACTTCAGACACTaGCCGATCCCCACTGGTGTCATATTAAAGGAACAC | + |
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Preference number: 6 (lower is better) Translates to: VASCHCRTYFRH*PIPTGVILKEH Trigger: GTGTTCCTTTAATATGACACCAGTGGGGATCGGCAAGTGTCTGAAGTATGTCCTACAGTGGCAGCTGGCAAC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000087916.11 |
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| CDS CAA 72 bp | TGGCAAGGTTATAGCCTCCTCCTCCTAAAATCAGAGTaGCCAGCTGCCACTGTAGGACATACTTCAGACACT | + |
|
Preference number: 6 (lower is better) Translates to: WQGYSLLLLKSE*PAATVGHTSDT Trigger: AGTGTCTGAAGTATGTCCTACAGTGGCAGCTGGCAACTCTGATTTTAGGAGGAGGAGGCTATAACCTTGCCA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000087916.11 |
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| CDS TCA 72 bp | TATCTGCTCCCAGCTGTAAAACCACTGCCTTCGGATTaGAGGCCTGGTACACTTCTTTTAGTACACTTTCAC | + |
|
Preference number: 6 (lower is better) Translates to: YLLPAVKPLPSD*RPGTLLLVHFH Trigger: GTGAAAGTGTACTAAAAGAAGTGTACCAGGCCTTCAATCCGAAGGCAGTGGTTTTACAGCTGGGAGCAGATA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000087916.11 |
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| CDS CAA 72 bp | GTATCTGCTCCCAGCTGTAAAACCACTGCCTTCGGATaGAAGGCCTGGTACACTTCTTTTAGTACACTTTCA | + |
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Preference number: 6 (lower is better) Translates to: VSAPSCKTTAFG*KAWYTSFSTLS Trigger: TGAAAGTGTACTAAAAGAAGTGTACCAGGCCTTCAATCCGAAGGCAGTGGTTTTACAGCTGGGAGCAGATAC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000087916.11 |
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