Pregenerated sensors for HDAC2 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000019777Ensembl transcript IDs: ENSMUST00000019911.14, ENSMUST00000105510.2
Found 84 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | GCACGGAAAAGAACACCACAAGAAGAAATAATTAAGGAGGCAAGGTaGACAGCAGCTGGCTGCTTGGCTTCACTAGGCCTGAGACAATGT | + |
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Preference number: 1 (lower is better) Translates to: ARKRTPQEEIIKEAR*TAAGCLASLGLRQC Trigger: ACATTGTCTCAGGCCTAGTGAAGCCAAGCAGCCAGCTGCTGTCCACCTTGCCTCCTTAATTATTTCTTCTTGTGGTGTTCTTTTCCGTGC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000105510.2 |
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| 3UTR TCA 90 bp | GAAGACACTTATGTGTTCCACCAGCAAGTTAGATACAGTGCCCACTaGTCAGGAGACATAATAAAGCAGAAGCAGAGAGCTCTCTGTCCC | + |
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Preference number: 1 (lower is better) Translates to: EDTYVFHQQVRYSAH*SGDIIKQKQRALCP Trigger: GGGACAGAGAGCTCTCTGCTTCTGCTTTATTATGTCTCCTGATCAGTGGGCACTGTATCTAACTTGCTGGTGGAACACATAAGTGTCTTC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000105510.2 |
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| 3UTR GCA 90 bp | TGGACCCATCTCTGCTGTTCTAATGCTGAGTCTAAAAGCATGCGCTaGCACATGCAACTTTGCTTCATTCTGAAACCCTCGAAGTTCATC | + |
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Preference number: 1 (lower is better) Translates to: WTHLCCSNAESKSMR*HMQLCFILKPSKFI Trigger: GATGAACTTCGAGGGTTTCAGAATGAAGCAAAGTTGCATGTGGCAGCGCATGCTTTTAGACTCAGCATTAGAACAGCAGAGATGGGTCCA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000105510.2 |
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| 3UTR CCA 90 bp | CGAAGTTCATCCCATAACAGCAATATGAGACTTGTATTCAGCATGTaGACTTCGGCTCTTCGTAAGGACTTGAGAATTTCAACACCACCT | + |
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Preference number: 1 (lower is better) Translates to: RSSSHNSNMRLVFSM*TSALRKDLRISTPP Trigger: AGGTGGTGTTGAAATTCTCAAGTCCTTACGAAGAGCCGAAGTCCACATGCTGAATACAAGTCTCATATTGCTGTTATGGGATGAACTTCG 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000105510.2 |
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| 3UTR-3UTR TCA 90 bp | CTTTCACCTGGTATTGAGACGCTGGCTGCTCTAAGCACAAAAGTCATTGAATCTAGCATGCCACAGTGCTaGGGCTGGTCTGCAGAGTAC | + |
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Preference number: 2 (lower is better) Translates to: LSPGIETLAALSTKVIESSMPQC*GWSAEY Trigger: GTACTCTGCAGACCAGCCTCAGCACTGTGGCATGCT...AGATTCAATGACTTTTGTGCTTAGAGCAGCCAGCGTCTCAATACCAGGTGAAAG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000105510.2 |
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| 3UTR-3UTR TCA 90 bp | AATTTCAACACCACCTTACACATTTACACTTGGGCTTCTTTCCTCATGAAGACAAAAAACCACTGCTGCTaGGCACTAGCCACAGCGACC | + |
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Preference number: 2 (lower is better) Translates to: NFNTTLHIYTWASFLMKTKNHCC*ALATAT Trigger: GGTCGCTGTGGCTAGTGCTCAGCAGCAGTGGTTTTT...TGTCTTCATGAGGAAAGAAGCCCAAGTGTAAATGTGTAAGGTGGTGTTGAAATT 46% GC, longest homopolymer 6 nt, total homopolymer stretches 6 nt. Matches the following 1 transcripts: ENSMUST00000105510.2 |
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| 3UTR-3UTR TCA 90 bp | CTTTCACCTGGTATTGAGACGCTGGCTGCTCTAAGCACAAAAGTCATTGAATCTGAAAGTGCTGTTAACTaGATGCTGACCTCCAGGAGA | + |
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Preference number: 2 (lower is better) Translates to: LSPGIETLAALSTKVIESESAVN*MLTSRR Trigger: TCTCCTGGAGGTCAGCATTCAGTTAACAGCACTTTC...AGATTCAATGACTTTTGTGCTTAGAGCAGCCAGCGTCTCAATACCAGGTGAAAG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000105510.2 |
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| 3UTR-3UTR CCA 90 bp | CTGTTTTCTTCATGTACATTATCAACCAGGCATCTTCTACTACAACAGTGTCTCATTAAGGAGGCAAGGTaGACAGCAGCTGGCTGCTTG | + |
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Preference number: 2 (lower is better) Translates to: LFSSCTLSTRHLLLQQCLIKEAR*TAAGCL Trigger: CAAGCAGCCAGCTGCTGTCCACCTTGCCTCCTTAAT...GAGACACTGTTGTAGTAGAAGATGCCTGGTTGATAATGTACATGAAGAAAACAG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000105510.2 |
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| 3UTR-3UTR GCA 90 bp | TTTATGAGACAAGGTTTTACTATATATAAAGCCTTAGCTGGCCTGGACCCATCTTGCGTACCACATGCATaGAAATCAGAAGAGAGTGCT | + |
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Preference number: 2 (lower is better) Translates to: FMRQGFTIYKALAGLDPSCVPHA*KSEESA Trigger: AGCACTCTCTTCTGATTTGCATGCATGTGGTACGCA...AGATGGGTCCAGGCCAGCTAAGGCTTTATATATAGTAAAACCTTGTCTCATAAA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000105510.2 |
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| 3UTR-3UTR GCA 90 bp | AATTTCAACACCACCTTACACATTTACACTTGGGCTTCTTTCCTCATGAAGACACATGATAGAATAAAGTaGGCCAAGCTAAATCCTCAT | + |
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Preference number: 2 (lower is better) Translates to: NFNTTLHIYTWASFLMKTHDRIK*AKLNPH Trigger: ATGAGGATTTAGCTTGGCGCACTTTATTCTATCATG...TGTCTTCATGAGGAAAGAAGCCCAAGTGTAAATGTGTAAGGTGGTGTTGAAATT 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000105510.2 |
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| 3UTR TCA 72 bp | AGATACGAAGGAGAGTACCAGAGCATGCCACAGTGCTaGGGCTGGTCTGCAGAGTACAATCATGAGAAGTTC | + |
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Preference number: 3 (lower is better) Translates to: RYEGEYQSMPQC*GWSAEYNHEKF Trigger: GAACTTCTCATGATTGTACTCTGCAGACCAGCCTCAGCACTGTGGCATGCTCTGGTACTCTCCTTCGTATCT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000105510.2 |
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| 3UTR TCA 72 bp | TATGTGTTCCACCAGCAAGTTAGATACAGTGCCCACTaGTCAGGAGACATAATAAAGCAGAAGCAGAGAGCT | + |
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Preference number: 3 (lower is better) Translates to: YVFHQQVRYSAH*SGDIIKQKQRA Trigger: AGCTCTCTGCTTCTGCTTTATTATGTCTCCTGATCAGTGGGCACTGTATCTAACTTGCTGGTGGAACACATA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000105510.2 |
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| 3UTR TCA 72 bp | TCTGAAACCCTCGAAGTTCATCCCATAACAGCAATATaGGACTTGTATTCAGCATGTGGACTTCGGCTCTTC | + |
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Preference number: 3 (lower is better) Translates to: SETLEVHPITAI*DLYSACGLRLF Trigger: GAAGAGCCGAAGTCCACATGCTGAATACAAGTCTCATATTGCTGTTATGGGATGAACTTCGAGGGTTTCAGA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000105510.2 |
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| 3UTR TCA 72 bp | AAAGCATGCGCTGCCACATGCAACTTTGCTTCATTCTaGAACCCTCGAAGTTCATCCCATAACAGCAATATG | + |
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Preference number: 3 (lower is better) Translates to: KACAATCNFASF*NPRSSSHNSNM Trigger: CATATTGCTGTTATGGGATGAACTTCGAGGGTTTCAGAATGAAGCAAAGTTGCATGTGGCAGCGCATGCTTT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000105510.2 |
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| 3UTR CCA 72 bp | AAGAGAGTGCTAGATTTTGAGCCAACATGTAGGAGCTaGGATCCAACCCAAGTCTTCTACAAAAGGAACATG | + |
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Preference number: 3 (lower is better) Translates to: KRVLDFEPTCRS*DPTQVFYKRNM Trigger: CATGTTCCTTTTGTAGAAGACTTGGGTTGGATCCCAGCTCCTACATGTTGGCTCAAAATCTAGCACTCTCTT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000105510.2 |
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| 3UTR CCA 72 bp | TCCCATAACAGCAATATGAGACTTGTATTCAGCATGTaGACTTCGGCTCTTCGTAAGGACTTGAGAATTTCA | + |
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Preference number: 3 (lower is better) Translates to: SHNSNMRLVFSM*TSALRKDLRIS Trigger: TGAAATTCTCAAGTCCTTACGAAGAGCCGAAGTCCACATGCTGAATACAAGTCTCATATTGCTGTTATGGGA 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000105510.2 |
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| 3UTR-3UTR CAA 90 bp | CTGTTTTCTTCATGTACATTATCAACCAGGCATCTTCTACTACAACAGTGTCTCAGTGGCCAACTAATTTaGTATGACCCAACTAGATAC | + |
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Preference number: 3 (lower is better) Translates to: LFSSCTLSTRHLLLQQCLSGQLI*YDPTRY Trigger: GTATCTAGTTGGGTCATACAAAATTAGTTGGCCACT...GAGACACTGTTGTAGTAGAAGATGCCTGGTTGATAATGTACATGAAGAAAACAG 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000105510.2 |
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| 3UTR CCA 72 bp | TATCAACCAGGCATCTTCTACTACAACAGTGTCTCTTaGACATTTTTAAGGACAGAAGTTAACTTCAGAGTA | + |
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Preference number: 3 (lower is better) Translates to: YQPGIFYYNSVS*TFLRTEVNFRV Trigger: TACTCTGAAGTTAACTTCTGTCCTTAAAAATGTCCAAGAGACACTGTTGTAGTAGAAGATGCCTGGTTGATA 38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000105510.2 |
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| CDS-3UTR TCA 90 bp | GGAAGGTTTCTTATCCCAGAATCGTCTCACTTTTCGAGGTTCCTAAAGTTGGAGCACAGCCCCAGCAACTaGACCACCCGTGGAGAGCTG | + |
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Preference number: 4 (lower is better) Translates to: GRFLIPESSHFSRFLKLEHSPSN*TTRGEL Trigger: CAGCTCTCCACGGGTGGTTCAGTTGCTGGGGCTGTG...CTCCAACTTTAGGAACCTCGAAAAGTGAGACGATTCTGGGATAAGAAACCTTCC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000019911.14 |
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| CDS-3UTR GCA 90 bp | AAACAGGGAAGGTTTCTTATCCCAGAATCGTCTCACTTTTCGAGGTTCCTAAAGCCCAGACAGGGAGTCTaGGCCACACTGCAGCACCAC | + |
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Preference number: 4 (lower is better) Translates to: KQGRFLIPESSHFSRFLKPRQGV*ATLQHH Trigger: GTGGTGCTGCAGTGTGGCGCAGACTCCCTGTCTGGG...CTTTAGGAACCTCGAAAAGTGAGACGATTCTGGGATAAGAAACCTTCCCTGTTT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000019911.14 |
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| CDS-3UTR GCA 90 bp | GGCTTCTTTCCTCATGAAGACACTTATGTGTTCCACCAGCAAGTTAGATACAGTCCCAGACAGGGAGTCTaGGCCACACTGCAGCACCAC | + |
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Preference number: 4 (lower is better) Translates to: GFFPHEDTYVFHQQVRYSPRQGV*ATLQHH Trigger: GTGGTGCTGCAGTGTGGCGCAGACTCCCTGTCTGGG...ACTGTATCTAACTTGCTGGTGGAACACATAAGTGTCTTCATGAGGAAAGAAGCC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000105510.2 |
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| CDS-3UTR TCA 90 bp | TGTCCTCAAACAGGGAAGGTTTCTTATCCCAGAATCGTCTCACTTTTCGAGGTTCCACCCGTGGAGAGCTaGCAAAACTCAAAGAGTCCA | + |
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Preference number: 4 (lower is better) Translates to: CPQTGKVSYPRIVSLFEVPPVES*QNSKSP Trigger: TGGACTCTTTGAGTTTTGTCAGCTCTCCACGGGTGG...AACCTCGAAAAGTGAGACGATTCTGGGATAAGAAACCTTCCCTGTTTGAGGACA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000019911.14 |
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| CDS-3UTR CCA 90 bp | GTCCTCAAACAGGGAAGGTTTCTTATCCCAGAATCGTCTCACTTTTCGAGGTTCACCACCGCGCTAGGCTaGTACATCTCCATCACTTTT | + |
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Preference number: 4 (lower is better) Translates to: VLKQGRFLIPESSHFSRFTTALG*YISITF Trigger: AAAAGTGATGGAGATGTACCAGCCTAGCGCGGTGGT...GAACCTCGAAAAGTGAGACGATTCTGGGATAAGAAACCTTCCCTGTTTGAGGAC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000019911.14 |
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| CDS-3UTR TCA 90 bp | GGCTTCTTTCCTCATGAAGACACTTATGTGTTCCACCAGCAAGTTAGATACAGTCCACCCGTGGAGAGCTaGCAAAACTCAAAGAGTCCA | + |
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Preference number: 4 (lower is better) Translates to: GFFPHEDTYVFHQQVRYSPPVES*QNSKSP Trigger: TGGACTCTTTGAGTTTTGTCAGCTCTCCACGGGTGG...ACTGTATCTAACTTGCTGGTGGAACACATAAGTGTCTTCATGAGGAAAGAAGCC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000105510.2 |
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| CDS-3UTR TCA 90 bp | GTCCTCAAACAGGGAAGGTTTCTTATCCCAGAATCGTCTCACTTTTCGAGGTTCGGAATAGCTTGCATTTaGACACCAGGTGCATGTGGT | + |
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Preference number: 4 (lower is better) Translates to: VLKQGRFLIPESSHFSRFGIACI*TPGACG Trigger: ACCACATGCACCTGGTGTTCAAATGCAAGCTATTCC...GAACCTCGAAAAGTGAGACGATTCTGGGATAAGAAACCTTCCCTGTTTGAGGAC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000019911.14 |
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| 3UTR CAA 72 bp | CTGAATGCTGACCTCCAGGAGAGTGGCCAACTAATTTaGTATGACCCAACTAGATACGAAGGAGAGTACCAG | + |
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Preference number: 4 (lower is better) Translates to: LNADLQESGQLI*YDPTRYEGEYQ Trigger: CTGGTACTCTCCTTCGTATCTAGTTGGGTCATACAAAATTAGTTGGCCACTCTCCTGGAGGTCAGCATTCAG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000105510.2 |
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| CDS-3UTR GCA 90 bp | AAACAGGGAAGGTTTCTTATCCCAGAATCGTCTCACTTTTCGAGGTTCCTAAAGAGCACACTTTCTTCTTaGCGCCTCCTTGACTGTACG | + |
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Preference number: 4 (lower is better) Translates to: KQGRFLIPESSHFSRFLKSTLSS*RLLDCT Trigger: CGTACAGTCAAGGAGGCGGCAAGAAGAAAGTGTGCT...CTTTAGGAACCTCGAAAAGTGAGACGATTCTGGGATAAGAAACCTTCCCTGTTT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000019911.14 |
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| CDS-3UTR GCA 90 bp | GGCTTCTTTCCTCATGAAGACACTTATGTGTTCCACCAGCAAGTTAGATACAGTAGCACACTTTCTTCTTaGCGCCTCCTTGACTGTACG | + |
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Preference number: 4 (lower is better) Translates to: GFFPHEDTYVFHQQVRYSSTLSS*RLLDCT Trigger: CGTACAGTCAAGGAGGCGGCAAGAAGAAAGTGTGCT...ACTGTATCTAACTTGCTGGTGGAACACATAAGTGTCTTCATGAGGAAAGAAGCC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000105510.2 |
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| CDS-3UTR CCA 90 bp | AAACAGGGAAGGTTTCTTATCCCAGAATCGTCTCACTTTTCGAGGTTCCTAAAGCTGACTTGGCTCCTTTaGGGTCTGTTTTCTCACCAC | + |
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Preference number: 4 (lower is better) Translates to: KQGRFLIPESSHFSRFLKLTWLL*GLFSHH Trigger: GTGGTGAGAAAACAGACCCCAAAGGAGCCAAGTCAG...CTTTAGGAACCTCGAAAAGTGAGACGATTCTGGGATAAGAAACCTTCCCTGTTT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000019911.14 |
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| CDS-3UTR TCA 90 bp | AAACAGGGAAGGTTTCTTATCCCAGAATCGTCTCACTTTTCGAGGTTCCTAAAGGTCCTCCAGCCCAATTaGCAGCCATATCAGTTTGTT | + |
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Preference number: 4 (lower is better) Translates to: KQGRFLIPESSHFSRFLKVLQPN*QPYQFV Trigger: AACAAACTGATATGGCTGTCAATTGGGCTGGAGGAC...CTTTAGGAACCTCGAAAAGTGAGACGATTCTGGGATAAGAAACCTTCCCTGTTT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000019911.14 |
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| CDS-3UTR TCA 90 bp | AAACAGGGAAGGTTTCTTATCCCAGAATCGTCTCACTTTTCGAGGTTCCTAAAGCCCATATTTATGGAATaGGACGGTCATCACGCGATC | + |
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Preference number: 4 (lower is better) Translates to: KQGRFLIPESSHFSRFLKPIFME*DGHHAI Trigger: GATCGCGTGATGACCGTCTCATTCCATAAATATGGG...CTTTAGGAACCTCGAAAAGTGAGACGATTCTGGGATAAGAAACCTTCCCTGTTT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000019911.14 |
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| CDS-3UTR TCA 90 bp | GTCCTCAAACAGGGAAGGTTTCTTATCCCAGAATCGTCTCACTTTTCGAGGTTCTTCATCCTCAGAATCTaGAAACTCTTCATCGCAAGC | + |
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Preference number: 4 (lower is better) Translates to: VLKQGRFLIPESSHFSRFFILRI*KLFIAS Trigger: GCTTGCGATGAAGAGTTTTCAGATTCTGAGGATGAA...GAACCTCGAAAAGTGAGACGATTCTGGGATAAGAAACCTTCCCTGTTTGAGGAC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000019911.14 |
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| CDS-3UTR GCA 90 bp | GTCCTCAAACAGGGAAGGTTTCTTATCCCAGAATCGTCTCACTTTTCGAGGTTCCCGACGTTAAATCTCTaGATCTGCTTACTGTACTCA | + |
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Preference number: 4 (lower is better) Translates to: VLKQGRFLIPESSHFSRFPTLNL*ICLLYS Trigger: TGAGTACAGTAAGCAGATGCAGAGATTTAACGTCGG...GAACCTCGAAAAGTGAGACGATTCTGGGATAAGAAACCTTCCCTGTTTGAGGAC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000019911.14 |
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| CDS-3UTR GCA 90 bp | GTCCTCAAACAGGGAAGGTTTCTTATCCCAGAATCGTCTCACTTTTCGAGGTTCGCCATATCAGTTTGTTaGCGGTTTAATTTCACAGCC | + |
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Preference number: 4 (lower is better) Translates to: VLKQGRFLIPESSHFSRFAISVC*RFNFTA Trigger: GGCTGTGAAATTAAACCGGCAACAAACTGATATGGC...GAACCTCGAAAAGTGAGACGATTCTGGGATAAGAAACCTTCCCTGTTTGAGGAC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000019911.14 |
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| CDS-3UTR GCA 90 bp | GTCCTCAAACAGGGAAGGTTTCTTATCCCAGAATCGTCTCACTTTTCGAGGTTCACAATCAAGGGCAACTaGAGTCTCATATGTCCAACA | + |
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Preference number: 4 (lower is better) Translates to: VLKQGRFLIPESSHFSRFTIKGN*SLICPT Trigger: TGTTGGACATATGAGACTGCAGTTGCCCTTGATTGT...GAACCTCGAAAAGTGAGACGATTCTGGGATAAGAAACCTTCCCTGTTTGAGGAC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000019911.14 |
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| CDS-3UTR TCA 90 bp | CCAACATGTAGGAGCTGGGATCCAACCCAAGTCTTCTACAAAAGGAACATGTGTTCAGCAGTGGCTTTATaGGGCCTATATATTTCCATT | + |
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Preference number: 4 (lower is better) Translates to: PTCRSWDPTQVFYKRNMCSAVAL*GLYISI Trigger: AATGGAAATATATAGGCCTCATAAAGCCACTGCTGA...ACACATGTTCCTTTTGTAGAAGACTTGGGTTGGATCCCAGCTCCTACATGTTGG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000105510.2 |
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| CDS-3UTR CCA 90 bp | AAACAGGGAAGGTTTCTTATCCCAGAATCGTCTCACTTTTCGAGGTTCCTAAAGATGCTTCTGACTTCTTaGCATGATGTAGTCCTCCAG | + |
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Preference number: 4 (lower is better) Translates to: KQGRFLIPESSHFSRFLKMLLTS*HDVVLQ Trigger: CTGGAGGACTACATCATGCCAAGAAGTCAGAAGCAT...CTTTAGGAACCTCGAAAAGTGAGACGATTCTGGGATAAGAAACCTTCCCTGTTT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000019911.14 |
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| CDS-3UTR CCA 90 bp | GTCCTCAAACAGGGAAGGTTTCTTATCCCAGAATCGTCTCACTTTTCGAGGTTCTCAACACCATCACCATaGTGGATGTCTATGTCAATA | + |
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Preference number: 4 (lower is better) Translates to: VLKQGRFLIPESSHFSRFSTPSP*WMSMSI Trigger: TATTGACATAGACATCCACCATGGTGATGGTGTTGA...GAACCTCGAAAAGTGAGACGATTCTGGGATAAGAAACCTTCCCTGTTTGAGGAC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000019911.14 |
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| CDS-3UTR CCA 90 bp | CTGTTTTCTTCATGTACATTATCAACCAGGCATCTTCTACTACAACAGTGTCTCACCACCGCGCTAGGCTaGTACATCTCCATCACTTTT | + |
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Preference number: 4 (lower is better) Translates to: LFSSCTLSTRHLLLQQCLTTALG*YISITF Trigger: AAAAGTGATGGAGATGTACCAGCCTAGCGCGGTGGT...GAGACACTGTTGTAGTAGAAGATGCCTGGTTGATAATGTACATGAAGAAAACAG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000105510.2 |
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| CDS-3UTR TCA 90 bp | AATTTCAACACCACCTTACACATTTACACTTGGGCTTCTTTCCTCATGAAGACAGTCCTCCAGCCCAATTaGCAGCCATATCAGTTTGTT | + |
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Preference number: 4 (lower is better) Translates to: NFNTTLHIYTWASFLMKTVLQPN*QPYQFV Trigger: AACAAACTGATATGGCTGTCAATTGGGCTGGAGGAC...TGTCTTCATGAGGAAAGAAGCCCAAGTGTAAATGTGTAAGGTGGTGTTGAAATT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000105510.2 |
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| CDS-3UTR TCA 90 bp | TTTATGAGACAAGGTTTTACTATATATAAAGCCTTAGCTGGCCTGGACCCATCTCCCATATTTATGGAATaGGACGGTCATCACGCGATC | + |
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Preference number: 4 (lower is better) Translates to: FMRQGFTIYKALAGLDPSPIFME*DGHHAI Trigger: GATCGCGTGATGACCGTCTCATTCCATAAATATGGG...AGATGGGTCCAGGCCAGCTAAGGCTTTATATATAGTAAAACCTTGTCTCATAAA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000105510.2 |
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| CDS-3UTR TCA 90 bp | AAACAGGGAAGGTTTCTTATCCCAGAATCGTCTCACTTTTCGAGGTTCCTAAAGTCAGCAGTGGCTTTATaGGGCCTATATATTTCCATT | + |
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Preference number: 4 (lower is better) Translates to: KQGRFLIPESSHFSRFLKSAVAL*GLYISI Trigger: AATGGAAATATATAGGCCTCATAAAGCCACTGCTGA...CTTTAGGAACCTCGAAAAGTGAGACGATTCTGGGATAAGAAACCTTCCCTGTTT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000019911.14 |
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| CDS-3UTR CCA 90 bp | CTGTTTTCTTCATGTACATTATCAACCAGGCATCTTCTACTACAACAGTGTCTCATGCTTCTGACTTCTTaGCATGATGTAGTCCTCCAG | + |
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Preference number: 4 (lower is better) Translates to: LFSSCTLSTRHLLLQQCLMLLTS*HDVVLQ Trigger: CTGGAGGACTACATCATGCCAAGAAGTCAGAAGCAT...GAGACACTGTTGTAGTAGAAGATGCCTGGTTGATAATGTACATGAAGAAAACAG 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000105510.2 |
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| CDS-3UTR CCA 90 bp | AAACAGGGAAGGTTTCTTATCCCAGAATCGTCTCACTTTTCGAGGTTCCTAAAGTATTCCCCATATTTATaGAATGAGACGGTCATCACG | + |
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Preference number: 4 (lower is better) Translates to: KQGRFLIPESSHFSRFLKYSPYL*NETVIT Trigger: CGTGATGACCGTCTCATTCCATAAATATGGGGAATA...CTTTAGGAACCTCGAAAAGTGAGACGATTCTGGGATAAGAAACCTTCCCTGTTT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000019911.14 |
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| CDS-3UTR CCA 90 bp | TGTCCTCAAACAGGGAAGGTTTCTTATCCCAGAATCGTCTCACTTTTCGAGGTTTATATGGCAACTCATTaGGAATTTCACAATCAAGGG | + |
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Preference number: 4 (lower is better) Translates to: CPQTGKVSYPRIVSLFEVYMATH*EFHNQG Trigger: CCCTTGATTGTGAAATTCCCAATGAGTTGCCATATA...AACCTCGAAAAGTGAGACGATTCTGGGATAAGAAACCTTCCCTGTTTGAGGACA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000019911.14 |
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| CDS-3UTR CCA 90 bp | GTCCTCAAACAGGGAAGGTTTCTTATCCCAGAATCGTCTCACTTTTCGAGGTTCCTTTTCCATATATTCTaGAGTGTTCTGGTTTGTCAT | + |
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Preference number: 4 (lower is better) Translates to: VLKQGRFLIPESSHFSRFLFHIF*SVLVCH Trigger: ATGACAAACCAGAACACTCCAGAATATATGGAAAAG...GAACCTCGAAAAGTGAGACGATTCTGGGATAAGAAACCTTCCCTGTTTGAGGAC 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000019911.14 |
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| CDS-3UTR TCA 90 bp | AAACAGGGAAGGTTTCTTATCCCAGAATCGTCTCACTTTTCGAGGTTCCTAAAGCTGGTTTGTCATGTTTaGAGGACTAATATGCAGTTT | + |
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Preference number: 4 (lower is better) Translates to: KQGRFLIPESSHFSRFLKLVCHV*RTNMQF Trigger: AAACTGCATATTAGTCCTTCAAACATGACAAACCAG...CTTTAGGAACCTCGAAAAGTGAGACGATTCTGGGATAAGAAACCTTCCCTGTTT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000019911.14 |
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| CDS-3UTR GCA 90 bp | AAACAGGGAAGGTTTCTTATCCCAGAATCGTCTCACTTTTCGAGGTTCCTAAAGTTTGAAGGACTAATATaGAGTTTGAAGTCTGGTCCA | + |
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Preference number: 4 (lower is better) Translates to: KQGRFLIPESSHFSRFLKFEGLI*SLKSGP Trigger: TGGACCAGACTTCAAACTGCATATTAGTCCTTCAAA...CTTTAGGAACCTCGAAAAGTGAGACGATTCTGGGATAAGAAACCTTCCCTGTTT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000019911.14 |
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| CDS-3UTR CCA 90 bp | AAACAGGGAAGGTTTCTTATCCCAGAATCGTCTCACTTTTCGAGGTTCCTAAAGTATTCTGGAGTGTTCTaGTTTGTCATGTTTGAAGGA | + |
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Preference number: 4 (lower is better) Translates to: KQGRFLIPESSHFSRFLKYSGVF*FVMFEG Trigger: TCCTTCAAACATGACAAACCAGAACACTCCAGAATA...CTTTAGGAACCTCGAAAAGTGAGACGATTCTGGGATAAGAAACCTTCCCTGTTT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000019911.14 |
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| CDS-3UTR CCA 90 bp | AATTTCAACACCACCTTACACATTTACACTTGGGCTTCTTTCCTCATGAAGACATCAACACCATCACCATaGTGGATGTCTATGTCAATA | + |
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Preference number: 4 (lower is better) Translates to: NFNTTLHIYTWASFLMKTSTPSP*WMSMSI Trigger: TATTGACATAGACATCCACCATGGTGATGGTGTTGA...TGTCTTCATGAGGAAAGAAGCCCAAGTGTAAATGTGTAAGGTGGTGTTGAAATT 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000105510.2 |
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| CDS-3UTR CCA 90 bp | AAACAGGGAAGGTTTCTTATCCCAGAATCGTCTCACTTTTCGAGGTTCCTAAAGATGCAGTTTGAAGTCTaGTCCAAAATACTCAAAGTA | + |
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Preference number: 4 (lower is better) Translates to: KQGRFLIPESSHFSRFLKMQFEV*SKILKV Trigger: TACTTTGAGTATTTTGGACCAGACTTCAAACTGCAT...CTTTAGGAACCTCGAAAAGTGAGACGATTCTGGGATAAGAAACCTTCCCTGTTT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000019911.14 |
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| CDS-3UTR GCA 90 bp | CAAAGTTCACACAGAAAGTCTAAAGTAAAACATGCAATGTGCATGCTAAGTCATCCGACGTTAAATCTCTaGATCTGCTTACTGTACTCA | + |
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Preference number: 4 (lower is better) Translates to: QSSHRKSKVKHAMCMLSHPTLNL*ICLLYS Trigger: TGAGTACAGTAAGCAGATGCAGAGATTTAACGTCGG...ATGACTTAGCATGCACATTGCATGTTTTACTTTAGACTTTCTGTGTGAACTTTG 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000105510.2 |
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| CDS GCA 90 bp | TTGAAACAACCAAGCCTGTCCCCAGACAGGGAGTCTGCGCCACACTaGAGCACCACCGCGCTAGGCTGGTACATCTCCATCACTTTTGAG | + |
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Preference number: 5 (lower is better) Translates to: LKQPSLSPDRESAPH*STTALGWYISITFE Trigger: CTCAAAAGTGATGGAGATGTACCAGCCTAGCGCGGTGGTGCTGCAGTGTGGCGCAGACTCCCTGTCTGGGGACAGGCTTGGTTGTTTCAA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000019911.14 ENSMUST00000105510.2 |
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| CDS-3UTR CAA 90 bp | GTCCTCAAACAGGGAAGGTTTCTTATCCCAGAATCGTCTCACTTTTCGAGGTTCCCTTTGACAGTTAGATaGAAACAACCAAGCCTGTCC | + |
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Preference number: 5 (lower is better) Translates to: VLKQGRFLIPESSHFSRFPLTVR*KQPSLS Trigger: GGACAGGCTTGGTTGTTTCAATCTAACTGTCAAAGG...GAACCTCGAAAAGTGAGACGATTCTGGGATAAGAAACCTTCCCTGTTTGAGGAC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000019911.14 |
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| CDS-3UTR CAA 90 bp | GGAAGGTTTCTTATCCCAGAATCGTCTCACTTTTCGAGGTTCCTAAAGTTGGAGTGGAATAGCTTGCATTaGAACACCAGGTGCATGTGG | + |
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Preference number: 5 (lower is better) Translates to: GRFLIPESSHFSRFLKLEWNSLH*NTRCMW Trigger: CCACATGCACCTGGTGTTCAAATGCAAGCTATTCCA...CTCCAACTTTAGGAACCTCGAAAAGTGAGACGATTCTGGGATAAGAAACCTTCC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000019911.14 |
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| CDS-3UTR CAA 90 bp | GGAAGGTTTCTTATCCCAGAATCGTCTCACTTTTCGAGGTTCCTAAAGTTGGAGCGAATGGAAATTCTTTaGTCCGGGTCTTCTCCATCC | + |
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Preference number: 5 (lower is better) Translates to: GRFLIPESSHFSRFLKLERMEIL*SGSSPS Trigger: GGATGGAGAAGACCCGGACAAAAGAATTTCCATTCG...CTCCAACTTTAGGAACCTCGAAAAGTGAGACGATTCTGGGATAAGAAACCTTCC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000019911.14 |
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| CDS-3UTR CAA 90 bp | GGAAGGTTTCTTATCCCAGAATCGTCTCACTTTTCGAGGTTCCTAAAGTTGGAGTCCTCTGTCTCCTTCTaGTCTTCTTCAATCCTAGCC | + |
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Preference number: 5 (lower is better) Translates to: GRFLIPESSHFSRFLKLESSVSF*SSSILA Trigger: GGCTAGGATTGAAGAAGACAAGAAGGAGACAGAGGA...CTCCAACTTTAGGAACCTCGAAAAGTGAGACGATTCTGGGATAAGAAACCTTCC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000019911.14 |
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| CDS-3UTR CAA 90 bp | CCAACATGTAGGAGCTGGGATCCAACCCAAGTCTTCTACAAAAGGAACATGTGTTTTTATGGGAAGTTCTaGGGGAGGAGAAACACCACA | + |
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Preference number: 5 (lower is better) Translates to: PTCRSWDPTQVFYKRNMCFYGKF*GRRNTT Trigger: TGTGGTGTTTCTCCTCCCCAAGAACTTCCCATAAAA...ACACATGTTCCTTTTGTAGAAGACTTGGGTTGGATCCCAGCTCCTACATGTTGG 46% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000105510.2 |
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| CDS-3UTR CAA 90 bp | AAACAGGGAAGGTTTCTTATCCCAGAATCGTCTCACTTTTCGAGGTTCCTAAAGAGTCCTCCAGCCCAATaGACAGCCATATCAGTTTGT | + |
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Preference number: 5 (lower is better) Translates to: KQGRFLIPESSHFSRFLKSPPAQ*TAISVC Trigger: ACAAACTGATATGGCTGTCAATTGGGCTGGAGGACT...CTTTAGGAACCTCGAAAAGTGAGACGATTCTGGGATAAGAAACCTTCCCTGTTT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000019911.14 |
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| CDS-3UTR CAA 90 bp | AAACAGGGAAGGTTTCTTATCCCAGAATCGTCTCACTTTTCGAGGTTCCTAAAGATCCTCTGGAATAGCTaGCATTTGAACACCAGGTGC | + |
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Preference number: 5 (lower is better) Translates to: KQGRFLIPESSHFSRFLKILWNS*HLNTRC Trigger: GCACCTGGTGTTCAAATGCAAGCTATTCCAGAGGAT...CTTTAGGAACCTCGAAAAGTGAGACGATTCTGGGATAAGAAACCTTCCCTGTTT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000019911.14 |
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| CDS-3UTR CAA 90 bp | AAACAGGGAAGGTTTCTTATCCCAGAATCGTCTCACTTTTCGAGGTTCCTAAAGTCGCAAGCTATCCGTTaGTCTGATGCTCGAATGGAA | + |
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Preference number: 5 (lower is better) Translates to: KQGRFLIPESSHFSRFLKSQAIR*SDARME Trigger: TTCCATTCGAGCATCAGACAAACGGATAGCTTGCGA...CTTTAGGAACCTCGAAAAGTGAGACGATTCTGGGATAAGAAACCTTCCCTGTTT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000019911.14 |
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| CDS TCA 90 bp | CCTCAAGTCTCCTGTTCCAGGAAAGTATTCCCCATATTTATGGAATaGGACGGTCATCACGCGATCTGTTGTATAAAAAGCTTCCTCAAC | + |
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Preference number: 5 (lower is better) Translates to: PQVSCSRKVFPIFME*DGHHAICCIKSFLN Trigger: GTTGAGGAAGCTTTTTATACAACAGATCGCGTGATGACCGTCTCATTCCATAAATATGGGGAATACTTTCCTGGAACAGGAGACTTGAGG 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000019911.14 ENSMUST00000105510.2 |
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| CDS-3UTR CAA 90 bp | GTCCTCAAACAGGGAAGGTTTCTTATCCCAGAATCGTCTCACTTTTCGAGGTTCATTGATCGTAGAAACTaGATATACTCATCGCTGTGG | + |
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Preference number: 5 (lower is better) Translates to: VLKQGRFLIPESSHFSRFIDRRN*IYSSLW Trigger: CCACAGCGATGAGTATATCAAGTTTCTACGATCAAT...GAACCTCGAAAAGTGAGACGATTCTGGGATAAGAAACCTTCCCTGTTTGAGGAC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000019911.14 |
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| CDS-3UTR CAA 90 bp | CCTGGTATTGAGACGCTGGCTGCTCTAAGCACAAAAGTCATTGAATCTTTGGGTATTGATCGTAGAAACTaGATATACTCATCGCTGTGG | + |
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Preference number: 5 (lower is better) Translates to: PGIETLAALSTKVIESLGIDRRN*IYSSLW Trigger: CCACAGCGATGAGTATATCAAGTTTCTACGATCAAT...ACCCAAAGATTCAATGACTTTTGTGCTTAGAGCAGCCAGCGTCTCAATACCAGG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000105510.2 |
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| CDS-3UTR CAA 90 bp | GGCTTCTTTCCTCATGAAGACACTTATGTGTTCCACCAGCAAGTTAGATACAGTCCTTTGACAGTTAGATaGAAACAACCAAGCCTGTCC | + |
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Preference number: 5 (lower is better) Translates to: GFFPHEDTYVFHQQVRYSPLTVR*KQPSLS Trigger: GGACAGGCTTGGTTGTTTCAATCTAACTGTCAAAGG...ACTGTATCTAACTTGCTGGTGGAACACATAAGTGTCTTCATGAGGAAAGAAGCC 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000105510.2 |
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| CDS-3UTR CAA 90 bp | GTCCTCAAACAGGGAAGGTTTCTTATCCCAGAATCGTCTCACTTTTCGAGGTTCTCACCACTATTGTCCTaGGATTTGTCTTCTTCCTTA | + |
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Preference number: 5 (lower is better) Translates to: VLKQGRFLIPESSHFSRFSPLLS*DLSSSL Trigger: TAAGGAAGAAGACAAATCCAAGGACAATAGTGGTGA...GAACCTCGAAAAGTGAGACGATTCTGGGATAAGAAACCTTCCCTGTTTGAGGAC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000019911.14 |
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| CDS-3UTR CAA 90 bp | CTGTTTTCTTCATGTACATTATCAACCAGGCATCTTCTACTACAACAGTGTCTCAGTCCTCCAGCCCAATaGACAGCCATATCAGTTTGT | + |
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Preference number: 5 (lower is better) Translates to: LFSSCTLSTRHLLLQQCLSPPAQ*TAISVC Trigger: ACAAACTGATATGGCTGTCAATTGGGCTGGAGGACT...GAGACACTGTTGTAGTAGAAGATGCCTGGTTGATAATGTACATGAAGAAAACAG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000105510.2 |
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| CDS-3UTR CAA 90 bp | AAACAGGGAAGGTTTCTTATCCCAGAATCGTCTCACTTTTCGAGGTTCCTAAAGTCATCACGCGATCTGTaGTATAAAAAGCTTCCTCAA | + |
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Preference number: 5 (lower is better) Translates to: KQGRFLIPESSHFSRFLKSSRDL*YKKLPQ Trigger: TTGAGGAAGCTTTTTATACAACAGATCGCGTGATGA...CTTTAGGAACCTCGAAAAGTGAGACGATTCTGGGATAAGAAACCTTCCCTGTTT 41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000019911.14 |
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| CDS-3UTR CAA 90 bp | AAACAGGGAAGGTTTCTTATCCCAGAATCGTCTCACTTTTCGAGGTTCCTAAAGGTTTTCTCACCACTATaGTCCTTGGATTTGTCTTCT | + |
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Preference number: 5 (lower is better) Translates to: KQGRFLIPESSHFSRFLKVFSPL*SLDLSS Trigger: AGAAGACAAATCCAAGGACAATAGTGGTGAGAAAAC...CTTTAGGAACCTCGAAAAGTGAGACGATTCTGGGATAAGAAACCTTCCCTGTTT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000019911.14 |
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| CDS-3UTR CAA 90 bp | AAACAGGGAAGGTTTCTTATCCCAGAATCGTCTCACTTTTCGAGGTTCCTAAAGTTATATGGCAACTCATaGGGAATTTCACAATCAAGG | + |
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Preference number: 5 (lower is better) Translates to: KQGRFLIPESSHFSRFLKLYGNS*GISQSR Trigger: CCTTGATTGTGAAATTCCCAATGAGTTGCCATATAA...CTTTAGGAACCTCGAAAAGTGAGACGATTCTGGGATAAGAAACCTTCCCTGTTT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000019911.14 |
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| CDS-3UTR CAA 90 bp | AAACAGGGAAGGTTTCTTATCCCAGAATCGTCTCACTTTTCGAGGTTCCTAAAGCTATTGTCCTTGGATTaGTCTTCTTCCTTAACATCT | + |
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Preference number: 5 (lower is better) Translates to: KQGRFLIPESSHFSRFLKLLSLD*SSSLTS Trigger: AGATGTTAAGGAAGAAGACAAATCCAAGGACAATAG...CTTTAGGAACCTCGAAAAGTGAGACGATTCTGGGATAAGAAACCTTCCCTGTTT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000019911.14 |
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| CDS TCA 90 bp | TTTGTCCATATGATTCATCATCTATACCATCTCTCATGGGAAAATTaGCAGCATAGTATTTTCCCTTTCCAGCACCAATATCCCTCAAGT | + |
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Preference number: 5 (lower is better) Translates to: FVHMIHHLYHLSWEN*QHSIFPFQHQYPSS Trigger: ACTTGAGGGATATTGGTGCTGGAAAGGGAAAATACTATGCTGTCAATTTTCCCATGAGAGATGGTATAGATGATGAATCATATGGACAAA 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000019911.14 ENSMUST00000105510.2 |
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| CDS-3UTR CAA 90 bp | AATTTCAACACCACCTTACACATTTACACTTGGGCTTCTTTCCTCATGAAGACAGTGAACTGCTTACCTTaGACAGTTAGATTGAAACAA | + |
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Preference number: 5 (lower is better) Translates to: NFNTTLHIYTWASFLMKTVNCLP*TVRLKQ Trigger: TTGTTTCAATCTAACTGTCAAAGGTAAGCAGTTCAC...TGTCTTCATGAGGAAAGAAGCCCAAGTGTAAATGTGTAAGGTGGTGTTGAAATT 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000105510.2 |
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| CDS GCA 72 bp | ATTGAAACAACCAAGCCTGTCCCCAGACAGGGAGTCTaGGCCACACTGCAGCACCACCGCGCTAGGCTGGTA | + |
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Preference number: 6 (lower is better) Translates to: IETTKPVPRQGV*ATLQHHRARLV Trigger: TACCAGCCTAGCGCGGTGGTGCTGCAGTGTGGCGCAGACTCCCTGTCTGGGGACAGGCTTGGTTGTTTCAAT 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000019911.14 ENSMUST00000105510.2 |
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| CDS CAA 90 bp | CACCACACCAGGGGGAACGTGAACTGCTTACCTTTGACAGTTAGATaGAAACAACCAAGCCTGTCCCCAGACAGGGAGTCTGCGCCACAC | + |
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Preference number: 6 (lower is better) Translates to: HHTRGNVNCLPLTVR*KQPSLSPDRESAPH Trigger: GTGTGGCGCAGACTCCCTGTCTGGGGACAGGCTTGGTTGTTTCAATCTAACTGTCAAAGGTAAGCAGTTCACGTTCCCCCTGGTGTGGTG 54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000105510.2 |
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| CDS CCA 72 bp | GAGTCTGCGCCACACTGCAGCACCACCGCGCTAGGCTaGTACATCTCCATCACTTTTGAGATGATAGGCTTA | + |
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Preference number: 6 (lower is better) Translates to: ESAPHCSTTALG*YISITFEMIGL Trigger: TAAGCCTATCATCTCAAAAGTGATGGAGATGTACCAGCCTAGCGCGGTGGTGCTGCAGTGTGGCGCAGACTC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000019911.14 ENSMUST00000105510.2 |
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| CDS CAA 72 bp | AGGGGGAACGTGAACTGCTTACCTTTGACAGTTAGATaGAAACAACCAAGCCTGTCCCCAGACAGGGAGTCT | + |
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Preference number: 6 (lower is better) Translates to: RGNVNCLPLTVR*KQPSLSPDRES Trigger: AGACTCCCTGTCTGGGGACAGGCTTGGTTGTTTCAATCTAACTGTCAAAGGTAAGCAGTTCACGTTCCCCCT 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000105510.2 |
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| CDS CAA 72 bp | GCTATCCGTTTGTCTGATGCTCGAATGGAAATTCTTTaGTCCGGGTCTTCTCCATCCTCATCTCCACTGTCT | + |
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Preference number: 6 (lower is better) Translates to: AIRLSDARMEIL*SGSSPSSSPLS Trigger: AGACAGTGGAGATGAGGATGGAGAAGACCCGGACAAAAGAATTTCCATTCGAGCATCAGACAAACGGATAGC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000019911.14 |
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| CDS CAA 90 bp | AGTTGTTCTGACTTGGCTCCTTTGGGGTCTGTTTTCTCACCACTATaGTCCTTGGATTTGTCTTCTTCCTTAACATCTGTCTTCTTGTCC | + |
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Preference number: 6 (lower is better) Translates to: SCSDLAPLGSVFSPL*SLDLSSSLTSVFLS Trigger: GGACAAGAAGACAGATGTTAAGGAAGAAGACAAATCCAAGGACAATAGTGGTGAGAAAACAGACCCCAAAGGAGCCAAGTCAGAACAACT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000019911.14 |
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| CDS CAA 72 bp | TCAGAATCTGAAAACTCTTCATCGCAAGCTATCCGTTaGTCTGATGCTCGAATGGAAATTCTTTTGTCCGGG | + |
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Preference number: 6 (lower is better) Translates to: SESENSSSQAIR*SDARMEILLSG Trigger: CCCGGACAAAAGAATTTCCATTCGAGCATCAGACAAACGGATAGCTTGCGATGAAGAGTTTTCAGATTCTGA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000019911.14 |
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| CDS CAA 72 bp | GCTCCTTTGGGGTCTGTTTTCTCACCACTATTGTCCTaGGATTTGTCTTCTTCCTTAACATCTGTCTTCTTG | + |
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Preference number: 6 (lower is better) Translates to: APLGSVFSPLLS*DLSSSLTSVFL Trigger: CAAGAAGACAGATGTTAAGGAAGAAGACAAATCCAAGGACAATAGTGGTGAGAAAACAGACCCCAAAGGAGC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000019911.14 |
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| CDS TCA 72 bp | TCCTGTTCCAGGAAAGTATTCCCCATATTTATGGAATaGGACGGTCATCACGCGATCTGTTGTATAAAAAGC | + |
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Preference number: 6 (lower is better) Translates to: SCSRKVFPIFME*DGHHAICCIKS Trigger: GCTTTTTATACAACAGATCGCGTGATGACCGTCTCATTCCATAAATATGGGGAATACTTTCCTGGAACAGGA 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000019911.14 ENSMUST00000105510.2 |
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| CDS CAA 72 bp | CATATTTATGGAATGAGACGGTCATCACGCGATCTGTaGTATAAAAAGCTTCCTCAACACCATCACCATGGT | + |
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Preference number: 6 (lower is better) Translates to: HIYGMRRSSRDL*YKKLPQHHHHG Trigger: ACCATGGTGATGGTGTTGAGGAAGCTTTTTATACAACAGATCGCGTGATGACCGTCTCATTCCATAAATATG 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000019911.14 ENSMUST00000105510.2 |
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| CDS CAA 90 bp | CCACTATTGTCCTTGGATTTGTCTTCTTCCTTAACATCTGTCTTCTaGTCCTCTGTCTCCTTCTTGTCTTCTTCAATCCTAGCCTTCTTT | + |
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Preference number: 6 (lower is better) Translates to: PLLSLDLSSSLTSVF*SSVSFLSSSILAFF Trigger: AAAGAAGGCTAGGATTGAAGAAGACAAGAAGGAGACAGAGGACAAGAAGACAGATGTTAAGGAAGAAGACAAATCCAAGGACAATAGTGG 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000019911.14 |
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