Pregenerated sensors for HDAC1 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000028800Ensembl transcript IDs: ENSMUST00000102597.5
Found 17 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR-3UTR TCA 90 bp | GGGTGGCAGGATGGACAAGGTCGCTCTGGGAAGAGCCCTCCTAGCACCACTGCCATAAAATCTGAGAAGTaGGGAACTTGGGGAGAAGAT | + |
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Preference number: 2 (lower is better) Translates to: GWQDGQGRSGKSPPSTTAIKSEK*GTWGED Trigger: ATCTTCTCCCCAAGTTCCTCACTTCTCAGATTTTAT...GGCAGTGGTGCTAGGAGGGCTCTTCCCAGAGCGACCTTGTCCATCCTGCCACCC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000102597.5 |
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| 3UTR-3UTR TCA 90 bp | GGGTGGCAGGATGGACAAGGTCGCTCTGGGAAGAGCCCTCCTAGCACCACTGCCAGAAAATATAAAATCTaGGAAGTGAGGAACTTGGGG | + |
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Preference number: 2 (lower is better) Translates to: GWQDGQGRSGKSPPSTTARKYKI*EVRNLG Trigger: CCCCAAGTTCCTCACTTCTCAGATTTTATATTTTCT...GGCAGTGGTGCTAGGAGGGCTCTTCCCAGAGCGACCTTGTCCATCCTGCCACCC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000102597.5 |
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| CDS-3UTR GCA 90 bp | GGGTGGCAGGATGGACAAGGTCGCTCTGGGAAGAGCCCTCCTAGCACCACTGCCTCCTCAGGGATGGCCTaGATCTGGACCCCAGGGGCA | + |
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Preference number: 4 (lower is better) Translates to: GWQDGQGRSGKSPPSTTASSGMA*IWTPGA Trigger: TGCCCCTGGGGTCCAGATGCAGGCCATCCCTGAGGA...GGCAGTGGTGCTAGGAGGGCTCTTCCCAGAGCGACCTTGTCCATCCTGCCACCC 64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000102597.5 |
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| CDS-3UTR CCA 90 bp | GGGTGGCAGGATGGACAAGGTCGCTCTGGGAAGAGCCCTCCTAGCACCACTGCCTGGACCCCAGGGGCATaGGGCAGCATCCTCAAGTTC | + |
|
Preference number: 4 (lower is better) Translates to: GWQDGQGRSGKSPPSTTAWTPGA*GSILKF Trigger: GAACTTGAGGATGCTGCCCCATGCCCCTGGGGTCCA...GGCAGTGGTGCTAGGAGGGCTCTTCCCAGAGCGACCTTGTCCATCCTGCCACCC 63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000102597.5 |
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| CDS-3UTR CCA 90 bp | GGGTGGCAGGATGGACAAGGTCGCTCTGGGAAGAGCCCTCCTAGCACCACTGCCTGGCATCCTCAGGGATaGCCTGCATCTGGACCCCAG | + |
|
Preference number: 4 (lower is better) Translates to: GWQDGQGRSGKSPPSTTAWHPQG*PASGPQ Trigger: CTGGGGTCCAGATGCAGGCCATCCCTGAGGATGCCA...GGCAGTGGTGCTAGGAGGGCTCTTCCCAGAGCGACCTTGTCCATCCTGCCACCC 63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000102597.5 |
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| CDS-3UTR GCA 90 bp | GGGTGGCAGGATGGACAAGGTCGCTCTGGGAAGAGCCCTCCTAGCACCACTGCCAAGCTTCACAGCACTTaGGACAGAGCCTCCCGTGGA | + |
|
Preference number: 4 (lower is better) Translates to: GWQDGQGRSGKSPPSTTAKLHST*DRASRG Trigger: TCCACGGGAGGCTCTGTCGCAAGTGCTGTGAAGCTT...GGCAGTGGTGCTAGGAGGGCTCTTCCCAGAGCGACCTTGTCCATCCTGCCACCC 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000102597.5 |
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| CDS-3UTR TCA 90 bp | GGGTGGCAGGATGGACAAGGTCGCTCTGGGAAGAGCCCTCCTAGCACCACTGCCCCTCCCGTGGACAACTaGCAGAACTCAAACAAGCCA | + |
|
Preference number: 4 (lower is better) Translates to: GWQDGQGRSGKSPPSTTAPPVDN*QNSNKP Trigger: TGGCTTGTTTGAGTTCTGTCAGTTGTCCACGGGAGG...GGCAGTGGTGCTAGGAGGGCTCTTCCCAGAGCGACCTTGTCCATCCTGCCACCC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000102597.5 |
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| CDS-3UTR TCA 90 bp | GGGTGGCAGGATGGACAAGGTCGCTCTGGGAAGAGCCCTCCTAGCACCACTGCCCCAGGACGATGTCATTaGCGTAACAGAAGCCAGAAG | + |
|
Preference number: 4 (lower is better) Translates to: GWQDGQGRSGKSPPSTTAPGRCH*RNRSQK Trigger: CTTCTGGCTTCTGTTACGTCAATGACATCGTCCTGG...GGCAGTGGTGCTAGGAGGGCTCTTCCCAGAGCGACCTTGTCCATCCTGCCACCC 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000102597.5 |
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| CDS-3UTR TCA 90 bp | GGGTGGCAGGATGGACAAGGTCGCTCTGGGAAGAGCCCTCCTAGCACCACTGCCCAAAGAGACGCTGCTTaGTCTTCTCCAGGTACTCGT | + |
|
Preference number: 4 (lower is better) Translates to: GWQDGQGRSGKSPPSTTAQRDAA*SSPGTR Trigger: ACGAGTACCTGGAGAAGATCAAGCAGCGTCTCTTTG...GGCAGTGGTGCTAGGAGGGCTCTTCCCAGAGCGACCTTGTCCATCCTGCCACCC 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000102597.5 |
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| CDS-3UTR TCA 90 bp | GGGTGGCAGGATGGACAAGGTCGCTCTGGGAAGAGCCCTCCTAGCACCACTGCCAGTCCTCACCAACATTaGATCTCTGCATCTGCTTGC | + |
|
Preference number: 4 (lower is better) Translates to: GWQDGQGRSGKSPPSTTASPHQH*ISASAC Trigger: GCAAGCAGATGCAGAGATTCAATGTTGGTGAGGACT...GGCAGTGGTGCTAGGAGGGCTCTTCCCAGAGCGACCTTGTCCATCCTGCCACCC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000102597.5 |
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| CDS-3UTR GCA 90 bp | GGGTGGCAGGATGGACAAGGTCGCTCTGGGAAGAGCCCTCCTAGCACCACTGCCGCGATGTCCGTCTGCTaGTTATTAAGCTTCACAGCA | + |
|
Preference number: 4 (lower is better) Translates to: GWQDGQGRSGKSPPSTTAAMSVC*LLSFTA Trigger: TGCTGTGAAGCTTAATAAGCAGCAGACGGACATCGC...GGCAGTGGTGCTAGGAGGGCTCTTCCCAGAGCGACCTTGTCCATCCTGCCACCC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000102597.5 |
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| CDS-3UTR GCA 90 bp | GGGTGGCAGGATGGACAAGGTCGCTCTGGGAAGAGCCCTCCTAGCACCACTGCCTTCTCAAAGAGACGCTaGTTGATCTTCTCCAGGTAC | + |
|
Preference number: 4 (lower is better) Translates to: GWQDGQGRSGKSPPSTTAFSKRR*LIFSRY Trigger: GTACCTGGAGAAGATCAAGCAGCGTCTCTTTGAGAA...GGCAGTGGTGCTAGGAGGGCTCTTCCCAGAGCGACCTTGTCCATCCTGCCACCC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000102597.5 |
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| CDS-3UTR GCA 90 bp | GGGTGGCAGGATGGACAAGGTCGCTCTGGGAAGAGCCCTCCTAGCACCACTGCCCCAACATTGAATCTCTaGATCTGCTTGCTGTATTCA | + |
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Preference number: 4 (lower is better) Translates to: GWQDGQGRSGKSPPSTTAPTLNL*ICLLYS Trigger: TGAATACAGCAAGCAGATGCAGAGATTCAATGTTGG...GGCAGTGGTGCTAGGAGGGCTCTTCCCAGAGCGACCTTGTCCATCCTGCCACCC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000102597.5 |
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| CDS-3UTR CAA 90 bp | GGGTGGCAGGATGGACAAGGTCGCTCTGGGAAGAGCCCTCCTAGCACCACTGCCACGAACTCCACACACTaGGCGTGTCCTTTGATGGTC | + |
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Preference number: 5 (lower is better) Translates to: GWQDGQGRSGKSPPSTTATNSTH*ACPLMV Trigger: GACCATCAAAGGACACGCCAAGTGTGTGGAGTTCGT...GGCAGTGGTGCTAGGAGGGCTCTTCCCAGAGCGACCTTGTCCATCCTGCCACCC 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000102597.5 |
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| CDS-3UTR CAA 90 bp | GGGTGGCAGGATGGACAAGGTCGCTCTGGGAAGAGCCCTCCTAGCACCACTGCCCAGATGGAGATGCGTTaGTCAGGGTCCTCCTCATCT | + |
|
Preference number: 5 (lower is better) Translates to: GWQDGQGRSGKSPPSTTAQMEMR*SGSSSS Trigger: AGATGAGGAGGACCCTGACAAACGCATCTCCATCTG...GGCAGTGGTGCTAGGAGGGCTCTTCCCAGAGCGACCTTGTCCATCCTGCCACCC 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000102597.5 |
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| CDS-3UTR CAA 90 bp | GGGTGGCAGGATGGACAAGGTCGCTCTGGGAAGAGCCCTCCTAGCACCACTGCCAAGTTAGAAGAGTTCTaGCGACCACCTTCTCCCTCC | + |
|
Preference number: 5 (lower is better) Translates to: GWQDGQGRSGKSPPSTTAKLEEF*RPPSPS Trigger: GGAGGGAGAAGGTGGTCGCAAGAACTCTTCTAACTT...GGCAGTGGTGCTAGGAGGGCTCTTCCCAGAGCGACCTTGTCCATCCTGCCACCC 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000102597.5 |
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| CDS-3UTR CAA 90 bp | GGGTGGCAGGATGGACAAGGTCGCTCTGGGAAGAGCCCTCCTAGCACCACTGCCATCAGCATGGGCAAGTaGAAACTCTTCACGAACTCC | + |
|
Preference number: 5 (lower is better) Translates to: GWQDGQGRSGKSPPSTTAISMGK*KLFTNS Trigger: GGAGTTCGTGAAGAGTTTCAACTTGCCCATGCTGAT...GGCAGTGGTGCTAGGAGGGCTCTTCCCAGAGCGACCTTGTCCATCCTGCCACCC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000102597.5 |
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