Pregenerated sensors for HCST (Mus musculus)

Ensembl gene IDs: ENSMUSG00000064109

Ensembl transcript IDs: ENSMUST00000075062.5, ENSMUST00000208740.2

Found 9 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type	Sensor	Details
CDS-3UTR CCA 90 bp	CCTGTCCTGAAGAAGTGCGTTCCCACGCACCCCAAACCCACAGGATCCAGGATGCTGACTTGCAGCCACTaGGAGCAGAAGCAGGAACAG	+
Preference number: 4 (lower is better) Translates to: PVLKKCVPTHPKPTGSRMLTCSH*EQKQEQ Trigger: CTGTTCCTGCTTCTGCTCCCAGTGGCTGCAAGTCAG...CATCCTGGATCCTGTGGGTTTGGGGTGCGTGGGAACGCACTTCTTCAGGACAGG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000075062.5
CDS-3UTR CAA 90 bp	GAAGAAGTGCGTTCCCACGCACCCCAAACCCACAGGATCCAGGATGAGCGGGTCGACTCTACCATCTTCTaGGGCAGGCCTGCCGTGTGG	+
Preference number: 5 (lower is better) Translates to: EEVRSHAPQTHRIQDERVDSTIF*GRPAVW Trigger: CCACACGGCAGGCCTGCCCAAGAAGATGGTAGAGTC...GACCCGCTCATCCTGGATCCTGTGGGTTTGGGGTGCGTGGGAACGCACTTCTTC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000075062.5 ENSMUST00000208740.2
CDS-3UTR CAA 90 bp	GAAGTGCGTTCCCACGCACCCCAAACCCACAGGATCCAGGATGAGCGGGTCAGACTGCCGATGTCTGACTaGCAGCCACTGGGAGCAGAA	+
Preference number: 5 (lower is better) Translates to: EVRSHAPQTHRIQDERVRLPMSD*QPLGAE Trigger: TTCTGCTCCCAGTGGCTGCAAGTCAGACATCGGCAG...TCTGACCCGCTCATCCTGGATCCTGTGGGTTTGGGGTGCGTGGGAACGCACTTC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000075062.5
CDS-3UTR CAA 90 bp	TGTCCTGAAGAAGTGCGTTCCCACGCACCCCAAACCCACAGGATCCAGGATGAGGACTCTACCATCTTCTaGGGCAGGCCTGCCGTGTGG	+
Preference number: 5 (lower is better) Translates to: CPEEVRSHAPQTHRIQDEDSTIF*GRPAVW Trigger: CCACACGGCAGGCCTGCCCAAGAAGATGGTAGAGTC...CTCATCCTGGATCCTGTGGGTTTGGGGTGCGTGGGAACGCACTTCTTCAGGACA 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000075062.5 ENSMUST00000208740.2
CDS TCA 90 bp	GTGGGCGCATACATACAAACACCACCCCTACAATTAGGAGTGACATaGCCGCATCTGCAGCCACTAGGCCTGCCAGGAGTGGCAGAGACA	+
Preference number: 5 (lower is better) Translates to: VGAYIQTPPLQLGVT*PHLQPLGLPGVAET Trigger: TGTCTCTGCCACTCCTGGCAGGCCTAGTGGCTGCAGATGCGGTCATGTCACTCCTAATTGTAGGGGTGGTGTTTGTATGTATGCGCCCAC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000075062.5 ENSMUST00000208740.2
CDS TCA 72 bp	AGAGTCCCACATCCGGAGCAGGAACCTGCCGATGTCTaGCTTGCAGCCACTGGGAGCAGAAGCAGGAACAGG	+
Preference number: 6 (lower is better) Translates to: RVPHPEQEPADV*LAATGSRSRNR Trigger: CCTGTTCCTGCTTCTGCTCCCAGTGGCTGCAAGTCAGACATCGGCAGGTTCCTGCTCCGGATGTGGGACTCT 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000075062.5
CDS CAA 72 bp	TCCCACATCCGGAGCAGGAACCTGCCGATGTCTGACTaGCAGCCACTGGGAGCAGAAGCAGGAACAGGAGGT	+
Preference number: 6 (lower is better) Translates to: SHIRSRNLPMSD*QPLGAEAGTGG Trigger: ACCTCCTGTTCCTGCTTCTGCTCCCAGTGGCTGCAAGTCAGACATCGGCAGGTTCCTGCTCCGGATGTGGGA 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000075062.5
CDS TCA 72 bp	TACATACAAACACCACCCCTACAATTAGGAGTGACATaGCCGCATCTGCAGCCACTAGGCCTGCCAGGAGTG	+
Preference number: 6 (lower is better) Translates to: YIQTPPLQLGVT*PHLQPLGLPGV Trigger: CACTCCTGGCAGGCCTAGTGGCTGCAGATGCGGTCATGTCACTCCTAATTGTAGGGGTGGTGTTTGTATGTA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000075062.5 ENSMUST00000208740.2
CDS CAA 72 bp	TCTGCCAGGCATGTTGATGTAGACTCTACCATCTTCTaGGGCAGGCCTGCCGTGTGGGCGCATACATACAAA	+
Preference number: 6 (lower is better) Translates to: SARHVDVDSTIF*GRPAVWAHTYK Trigger: TTTGTATGTATGCGCCCACACGGCAGGCCTGCCCAAGAAGATGGTAGAGTCTACATCAACATGCCTGGCAGA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000075062.5 ENSMUST00000208740.2