Pregenerated sensors for HCRT (Mus musculus)
Ensembl gene IDs: ENSMUSG00000045471Ensembl transcript IDs: ENSMUST00000055083.4, ENSMUST00000107360.3
Found 28 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
Type | Sensor | Details |
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3UTR CCA 90 bp | CCAGTGTGGCATTGCTCACACACCACGGTACAGTGGACCACACTATaGATGCTCTGGGAGGCTCCTCATGAAAGCTCAGATGCCTTGCTT | + |
Preference number: 1 (lower is better) Translates to: PVWHCSHTTVQWTTL*MLWEAPHESSDALL Trigger: AAGCAAGGCATCTGAGCTTTCATGAGGAGCCTCCCAGAGCATCCATAGTGTGGTCCACTGTACCGTGGTGTGTGAGCAATGCCACACTGG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000107360.3 |
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3UTR GCA 90 bp | TGTGGCATTGCTCACACACCACGGTACAGTGGACCACACTATGGATaGTCTGGGAGGCTCCTCATGAAAGCTCAGATGCCTTGCTTCTTC | + |
Preference number: 1 (lower is better) Translates to: CGIAHTPRYSGPHYG*SGRLLMKAQMPCFF Trigger: GAAGAAGCAAGGCATCTGAGCTTTCATGAGGAGCCTCCCAGAGCATCCATAGTGTGGTCCACTGTACCGTGGTGTGTGAGCAATGCCACA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000107360.3 |
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3UTR CCA 90 bp | CATTGCTCACACACCACGGTACAGTGGACCACACTATGGATGCTCTaGGAGGCTCCTCATGAAAGCTCAGATGCCTTGCTTCTTCTGCAG | + |
Preference number: 1 (lower is better) Translates to: HCSHTTVQWTTLWML*EAPHESSDALLLLQ Trigger: CTGCAGAAGAAGCAAGGCATCTGAGCTTTCATGAGGAGCCTCCCAGAGCATCCATAGTGTGGTCCACTGTACCGTGGTGTGTGAGCAATG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000107360.3 |
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3UTR CCA 72 bp | CACACCACGGTACAGTGGACCACACTATGGATGCTCTaGGAGGCTCCTCATGAAAGCTCAGATGCCTTGCTT | + |
Preference number: 3 (lower is better) Translates to: HTTVQWTTLWML*EAPHESSDALL Trigger: AAGCAAGGCATCTGAGCTTTCATGAGGAGCCTCCCAGAGCATCCATAGTGTGGTCCACTGTACCGTGGTGTG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000107360.3 |
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3UTR TCA 72 bp | ACAGAGAATCGTCTTTATTGCCATTTACCAAGAGACTaGCAGCGGCGAGCAGAGGGGGAAGTTTGGATCAGG | + |
Preference number: 3 (lower is better) Translates to: TENRLYCHLPRD*QRRAEGEVWIR Trigger: CCTGATCCAAACTTCCCCCTCTGCTCGCCGCTGTCAGTCTCTTGGTAAATGGCAATAAAGACGATTCTCTGT 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000055083.4 |
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CDS-3UTR GCA 90 bp | GCTCACACACCACGGTACAGTGGACCACACTATGGATGCTCTGGGAGGCTCCTCGTCGGGCAGAGGCTGTaGGTCCACCCCAAGCGACAG | + |
Preference number: 4 (lower is better) Translates to: AHTPRYSGPHYGCSGRLLVGQRL*VHPKRQ Trigger: CTGTCGCTTGGGGTGGACGCACAGCCTCTGCCCGAC...GAGGAGCCTCCCAGAGCATCCATAGTGTGGTCCACTGTACCGTGGTGTGTGAGC 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000107360.3 |
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CDS-3UTR CCA 90 bp | TGGATGCTCTGGGAGGCTCCTCATGAAAGCTCAGATGCCTTGCTTCTTCTGCAGCCGTCCCTGGAGGCCTaGAGGTCCAGGCCGCCGCTT | + |
Preference number: 4 (lower is better) Translates to: WMLWEAPHESSDALLLLQPSLEA*RSRPPL Trigger: AAGCGGCGGCCTGGACCTCCAGGCCTCCAGGGACGG...CTGCAGAAGAAGCAAGGCATCTGAGCTTTCATGAGGAGCCTCCCAGAGCATCCA 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000107360.3 |
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CDS-3UTR GCA 90 bp | AGACTGACAGCGGCGAGCAGAGGGGGAAGTTTGGATCAGGACAAGGATAGAAGAGTCGGGCAGAGGCTGTaGGTCCACCCCAAGCGACAG | + |
Preference number: 4 (lower is better) Translates to: RLTAASRGGSLDQDKDRRVGQRL*VHPKRQ Trigger: CTGTCGCTTGGGGTGGACGCACAGCCTCTGCCCGAC...TCTTCTATCCTTGTCCTGATCCAAACTTCCCCCTCTGCTCGCCGCTGTCAGTCT 59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000055083.4 |
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CDS-3UTR CCA 90 bp | CAACAGAGAATCGTCTTTATTGCCATTTACCAAGAGACTGACAGCGGCGAGCAGCCGTCCCTGGAGGCCTaGAGGTCCAGGCCGCCGCTT | + |
Preference number: 4 (lower is better) Translates to: QQRIVFIAIYQETDSGEQPSLEA*RSRPPL Trigger: AAGCGGCGGCCTGGACCTCCAGGCCTCCAGGGACGG...CTGCTCGCCGCTGTCAGTCTCTTGGTAAATGGCAATAAAGACGATTCTCTGTTG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000055083.4 |
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CDS-3UTR CCA 90 bp | CAACAGAGAATCGTCTTTATTGCCATTTACCAAGAGACTGACAGCGGCGAGCAGCGCTGCAGCCGTCCCTaGAGGCCTGGAGGTCCAGGC | + |
Preference number: 4 (lower is better) Translates to: QQRIVFIAIYQETDSGEQRCSRP*RPGGPG Trigger: GCCTGGACCTCCAGGCCTCCAGGGACGGCTGCAGCG...CTGCTCGCCGCTGTCAGTCTCTTGGTAAATGGCAATAAAGACGATTCTCTGTTG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000055083.4 |
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CDS-3UTR GCA 90 bp | AAGAGACTGACAGCGGCGAGCAGAGGGGGAAGTTTGGATCAGGACAAGGATAGAGGTCAGGATGCCAGCTaGGTGGTTACCGTTGGCCTG | + |
Preference number: 4 (lower is better) Translates to: KRLTAASRGGSLDQDKDRGQDAS*VVTVGL Trigger: CAGGCCAACGGTAACCACGCAGCTGGCATCCTGACC...TCTATCCTTGTCCTGATCCAAACTTCCCCCTCTGCTCGCCGCTGTCAGTCTCTT 57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000055083.4 |
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CDS-3UTR CCA 90 bp | CACACCACGGTACAGTGGACCACACTATGGATGCTCTGGGAGGCTCCTCATGAACAGGAACACGTCTTCTaGCGACAGCAGTCGGGCAGA | + |
Preference number: 4 (lower is better) Translates to: HTTVQWTTLWMLWEAPHEQEHVF*RQQSGR Trigger: TCTGCCCGACTGCTGTCGCCAGAAGACGTGTTCCTG...TTCATGAGGAGCCTCCCAGAGCATCCATAGTGTGGTCCACTGTACCGTGGTGTG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000107360.3 |
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CDS-3UTR CCA 90 bp | AAGAGACTGACAGCGGCGAGCAGAGGGGGAAGTTTGGATCAGGACAAGGATAGACTGCGTGGTTACCGTTaGCCTGAAGGAGGCGCTGCA | + |
Preference number: 4 (lower is better) Translates to: KRLTAASRGGSLDQDKDRLRGYR*PEGGAA Trigger: TGCAGCGCCTCCTTCAGGCCAACGGTAACCACGCAG...TCTATCCTTGTCCTGATCCAAACTTCCCCCTCTGCTCGCCGCTGTCAGTCTCTT 57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000055083.4 |
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CDS-3UTR GCA 90 bp | TCACACACCACGGTACAGTGGACCACACTATGGATGCTCTGGGAGGCTCCTCATGCCAGGTGGACTCTGTaGCCTTGTATTGGACCTCTC | + |
Preference number: 4 (lower is better) Translates to: SHTTVQWTTLWMLWEAPHARWTL*PCIGPL Trigger: GAGAGGTCCAATACAAGGGCACAGAGTCCACCTGGC...ATGAGGAGCCTCCCAGAGCATCCATAGTGTGGTCCACTGTACCGTGGTGTGTGA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000107360.3 |
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CDS-3UTR CCA 90 bp | CACACCACGGTACAGTGGACCACACTATGGATGCTCTGGGAGGCTCCTCATGAACCAGCCCTTGCCAGGTaGACTCTGTGCCCTTGTATT | + |
Preference number: 4 (lower is better) Translates to: HTTVQWTTLWMLWEAPHEPALAR*TLCPCI Trigger: AATACAAGGGCACAGAGTCCACCTGGCAAGGGCTGG...TTCATGAGGAGCCTCCCAGAGCATCCATAGTGTGGTCCACTGTACCGTGGTGTG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000107360.3 |
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CDS-3UTR TCA 90 bp | CAACAGAGAATCGTCTTTATTGCCATTTACCAAGAGACTGACAGCGGCGAGCAGTGGTTACCGTTGGCCTaGAGGAGGCGCTGCAGCCGT | + |
Preference number: 4 (lower is better) Translates to: QQRIVFIAIYQETDSGEQWLPLA*RRRCSR Trigger: ACGGCTGCAGCGCCTCCTTCAGGCCAACGGTAACCA...CTGCTCGCCGCTGTCAGTCTCTTGGTAAATGGCAATAAAGACGATTCTCTGTTG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000055083.4 |
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CDS-3UTR GCA 90 bp | AGAGAATCGTCTTTATTGCCATTTACCAAGAGACTGACAGCGGCGAGCAGAGGGGGCCCATGGTCAGGATaGCAGCTGCGTGGTTACCGT | + |
Preference number: 4 (lower is better) Translates to: RESSLLPFTKRLTAASRGGPWSG*QLRGYR Trigger: ACGGTAACCACGCAGCTGGCATCCTGACCATGGGCC...CCCTCTGCTCGCCGCTGTCAGTCTCTTGGTAAATGGCAATAAAGACGATTCTCT 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000055083.4 |
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CDS-3UTR CCA 90 bp | CAACAGAGAATCGTCTTTATTGCCATTTACCAAGAGACTGACAGCGGCGAGCAGCAGGAACACGTCTTCTaGCGACAGCAGTCGGGCAGA | + |
Preference number: 4 (lower is better) Translates to: QQRIVFIAIYQETDSGEQQEHVF*RQQSGR Trigger: TCTGCCCGACTGCTGTCGCCAGAAGACGTGTTCCTG...CTGCTCGCCGCTGTCAGTCTCTTGGTAAATGGCAATAAAGACGATTCTCTGTTG 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000055083.4 |
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CDS TCA 90 bp | CGGCGGCCCATGGTCAGGATGCCAGCTGCGTGGTTACCGTTGGCCTaGAGGAGGCGCTGCAGCCGTCCCTGGAGGCCTGGAGGTCCAGGC | + |
Preference number: 5 (lower is better) Translates to: RRPMVRMPAAWLPLA*RRRCSRPWRPGGPG Trigger: GCCTGGACCTCCAGGCCTCCAGGGACGGCTGCAGCGCCTCCTTCAGGCCAACGGTAACCACGCAGCTGGCATCCTGACCATGGGCCGCCG 70% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000055083.4 |
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CDS CCA 90 bp | CTGCGCGGCGGCCCATGGTCAGGATGCCAGCTGCGTGGTTACCGTTaGCCTGAAGGAGGCGCTGCAGCCGTCCCTGGAGGCCTGGAGGTC | + |
Preference number: 5 (lower is better) Translates to: LRGGPWSGCQLRGYR*PEGGAAAVPGGLEV Trigger: GACCTCCAGGCCTCCAGGGACGGCTGCAGCGCCTCCTTCAGGCCAACGGTAACCACGCAGCTGGCATCCTGACCATGGGCCGCCGCGCAG 70% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000055083.4 |
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CDS GCA 90 bp | GATGTGGCTCTAGCTCTGCGCCTGCGCGGCGGCCCATGGTCAGGATaGCAGCTGCGTGGTTACCGTTGGCCTGAAGGAGGCGCTGCAGCC | + |
Preference number: 5 (lower is better) Translates to: DVALALRLRGGPWSG*QLRGYRWPEGGAAA Trigger: GGCTGCAGCGCCTCCTTCAGGCCAACGGTAACCACGCAGCTGGCATCCTGACCATGGGCCGCCGCGCAGGCGCAGAGCTAGAGCCACATC 68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000055083.4 |
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CDS CCA 90 bp | CAGAGCAGGGATGTGGCTCTAGCTCTGCGCCTGCGCGGCGGCCCATaGTCAGGATGCCAGCTGCGTGGTTACCGTTGGCCTGAAGGAGGC | + |
Preference number: 5 (lower is better) Translates to: QSRDVALALRLRGGP*SGCQLRGYRWPEGG Trigger: GCCTCCTTCAGGCCAACGGTAACCACGCAGCTGGCATCCTGACCATGGGCCGCCGCGCAGGCGCAGAGCTAGAGCCACATCCCTGCTCTG 67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000055083.4 |
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CDS CCA 90 bp | GTGGACTCTGTGCCCTTGTATTGGACCTCTCTGTGTAGGTCCCGTTaGCCTGAAGGAGGCGCTGCAGCCGTCCCTGGAGGCCTGGAGGTC | + |
Preference number: 5 (lower is better) Translates to: VDSVPLYWTSLCRSR*PEGGAAAVPGGLEV Trigger: GACCTCCAGGCCTCCAGGGACGGCTGCAGCGCCTCCTTCAGGCCAACGGGACCTACACAGAGAGGTCCAATACAAGGGCACAGAGTCCAC 63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000107360.3 |
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CDS GCA 72 bp | ACACGTCTTCTGGCGACAGCAGTCGGGCAGAGGCTGTaGGTCCACCCCAAGCGACAGCAGCGCCGGCGGCAG | + |
Preference number: 6 (lower is better) Translates to: TRLLATAVGQRL*VHPKRQQRRRQ Trigger: CTGCCGCCGGCGCTGCTGTCGCTTGGGGTGGACGCACAGCCTCTGCCCGACTGCTGTCGCCAGAAGACGTGT 69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000055083.4 ENSMUST00000107360.3 |
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CDS GCA 72 bp | TGCGCCTGCGCGGCGGCCCATGGTCAGGATGCCAGCTaGGTGGTTACCGTTGGCCTGAAGGAGGCGCTGCAG | + |
Preference number: 6 (lower is better) Translates to: CACAAAHGQDAS*VVTVGLKEALQ Trigger: CTGCAGCGCCTCCTTCAGGCCAACGGTAACCACGCAGCTGGCATCCTGACCATGGGCCGCCGCGCAGGCGCA 69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000055083.4 |
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CDS GCA 72 bp | CTAGCTCTGCGCCTGCGCGGCGGCCCATGGTCAGGATaGCAGCTGCGTGGTTACCGTTGGCCTGAAGGAGGC | + |
Preference number: 6 (lower is better) Translates to: LALRLRGGPWSG*QLRGYRWPEGG Trigger: GCCTCCTTCAGGCCAACGGTAACCACGCAGCTGGCATCCTGACCATGGGCCGCCGCGCAGGCGCAGAGCTAG 68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000055083.4 |
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CDS CCA 72 bp | GATGTGGCTCTAGCTCTGCGCCTGCGCGGCGGCCCATaGTCAGGATGCCAGCTGCGTGGTTACCGTTGGCCT | + |
Preference number: 6 (lower is better) Translates to: DVALALRLRGGP*SGCQLRGYRWP Trigger: AGGCCAACGGTAACCACGCAGCTGGCATCCTGACCATGGGCCGCCGCGCAGGCGCAGAGCTAGAGCCACATC 67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000055083.4 |
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CDS TCA 72 bp | ATGGTCAGGATGCCAGCTGCGTGGTTACCGTTGGCCTaGAGGAGGCGCTGCAGCCGTCCCTGGAGGCCTGGA | + |
Preference number: 6 (lower is better) Translates to: MVRMPAAWLPLA*RRRCSRPWRPG Trigger: TCCAGGCCTCCAGGGACGGCTGCAGCGCCTCCTTCAGGCCAACGGTAACCACGCAGCTGGCATCCTGACCAT 65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000055083.4 |