RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for HCRT (Mus musculus)

Ensembl gene IDs: ENSMUSG00000045471

Ensembl transcript IDs: ENSMUST00000055083.4, ENSMUST00000107360.3

Found 28 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR CCA 90 bp CCAGTGTGGCATTGCTCACACACCACGGTACAGTGGACCACACTATaGATGCTCTGGGAGGCTCCTCATGAAAGCTCAGATGCCTTGCTT +
Preference number: 1 (lower is better)
Translates to: PVWHCSHTTVQWTTL*MLWEAPHESSDALL
Trigger: AAGCAAGGCATCTGAGCTTTCATGAGGAGCCTCCCAGAGCATCCATAGTGTGGTCCACTGTACCGTGGTGTGTGAGCAATGCCACACTGG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000107360.3
3UTR GCA 90 bp TGTGGCATTGCTCACACACCACGGTACAGTGGACCACACTATGGATaGTCTGGGAGGCTCCTCATGAAAGCTCAGATGCCTTGCTTCTTC +
Preference number: 1 (lower is better)
Translates to: CGIAHTPRYSGPHYG*SGRLLMKAQMPCFF
Trigger: GAAGAAGCAAGGCATCTGAGCTTTCATGAGGAGCCTCCCAGAGCATCCATAGTGTGGTCCACTGTACCGTGGTGTGTGAGCAATGCCACA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000107360.3
3UTR CCA 90 bp CATTGCTCACACACCACGGTACAGTGGACCACACTATGGATGCTCTaGGAGGCTCCTCATGAAAGCTCAGATGCCTTGCTTCTTCTGCAG +
Preference number: 1 (lower is better)
Translates to: HCSHTTVQWTTLWML*EAPHESSDALLLLQ
Trigger: CTGCAGAAGAAGCAAGGCATCTGAGCTTTCATGAGGAGCCTCCCAGAGCATCCATAGTGTGGTCCACTGTACCGTGGTGTGTGAGCAATG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000107360.3
3UTR CCA 72 bp CACACCACGGTACAGTGGACCACACTATGGATGCTCTaGGAGGCTCCTCATGAAAGCTCAGATGCCTTGCTT +
Preference number: 3 (lower is better)
Translates to: HTTVQWTTLWML*EAPHESSDALL
Trigger: AAGCAAGGCATCTGAGCTTTCATGAGGAGCCTCCCAGAGCATCCATAGTGTGGTCCACTGTACCGTGGTGTG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000107360.3
3UTR TCA 72 bp ACAGAGAATCGTCTTTATTGCCATTTACCAAGAGACTaGCAGCGGCGAGCAGAGGGGGAAGTTTGGATCAGG +
Preference number: 3 (lower is better)
Translates to: TENRLYCHLPRD*QRRAEGEVWIR
Trigger: CCTGATCCAAACTTCCCCCTCTGCTCGCCGCTGTCAGTCTCTTGGTAAATGGCAATAAAGACGATTCTCTGT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000055083.4
CDS-3UTR GCA 90 bp GCTCACACACCACGGTACAGTGGACCACACTATGGATGCTCTGGGAGGCTCCTCGTCGGGCAGAGGCTGTaGGTCCACCCCAAGCGACAG +
Preference number: 4 (lower is better)
Translates to: AHTPRYSGPHYGCSGRLLVGQRL*VHPKRQ
Trigger: CTGTCGCTTGGGGTGGACGCACAGCCTCTGCCCGAC...GAGGAGCCTCCCAGAGCATCCATAGTGTGGTCCACTGTACCGTGGTGTGTGAGC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000107360.3
CDS-3UTR CCA 90 bp TGGATGCTCTGGGAGGCTCCTCATGAAAGCTCAGATGCCTTGCTTCTTCTGCAGCCGTCCCTGGAGGCCTaGAGGTCCAGGCCGCCGCTT +
Preference number: 4 (lower is better)
Translates to: WMLWEAPHESSDALLLLQPSLEA*RSRPPL
Trigger: AAGCGGCGGCCTGGACCTCCAGGCCTCCAGGGACGG...CTGCAGAAGAAGCAAGGCATCTGAGCTTTCATGAGGAGCCTCCCAGAGCATCCA
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000107360.3
CDS-3UTR GCA 90 bp AGACTGACAGCGGCGAGCAGAGGGGGAAGTTTGGATCAGGACAAGGATAGAAGAGTCGGGCAGAGGCTGTaGGTCCACCCCAAGCGACAG +
Preference number: 4 (lower is better)
Translates to: RLTAASRGGSLDQDKDRRVGQRL*VHPKRQ
Trigger: CTGTCGCTTGGGGTGGACGCACAGCCTCTGCCCGAC...TCTTCTATCCTTGTCCTGATCCAAACTTCCCCCTCTGCTCGCCGCTGTCAGTCT
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000055083.4
CDS-3UTR CCA 90 bp CAACAGAGAATCGTCTTTATTGCCATTTACCAAGAGACTGACAGCGGCGAGCAGCCGTCCCTGGAGGCCTaGAGGTCCAGGCCGCCGCTT +
Preference number: 4 (lower is better)
Translates to: QQRIVFIAIYQETDSGEQPSLEA*RSRPPL
Trigger: AAGCGGCGGCCTGGACCTCCAGGCCTCCAGGGACGG...CTGCTCGCCGCTGTCAGTCTCTTGGTAAATGGCAATAAAGACGATTCTCTGTTG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000055083.4
CDS-3UTR CCA 90 bp CAACAGAGAATCGTCTTTATTGCCATTTACCAAGAGACTGACAGCGGCGAGCAGCGCTGCAGCCGTCCCTaGAGGCCTGGAGGTCCAGGC +
Preference number: 4 (lower is better)
Translates to: QQRIVFIAIYQETDSGEQRCSRP*RPGGPG
Trigger: GCCTGGACCTCCAGGCCTCCAGGGACGGCTGCAGCG...CTGCTCGCCGCTGTCAGTCTCTTGGTAAATGGCAATAAAGACGATTCTCTGTTG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000055083.4
CDS-3UTR GCA 90 bp AAGAGACTGACAGCGGCGAGCAGAGGGGGAAGTTTGGATCAGGACAAGGATAGAGGTCAGGATGCCAGCTaGGTGGTTACCGTTGGCCTG +
Preference number: 4 (lower is better)
Translates to: KRLTAASRGGSLDQDKDRGQDAS*VVTVGL
Trigger: CAGGCCAACGGTAACCACGCAGCTGGCATCCTGACC...TCTATCCTTGTCCTGATCCAAACTTCCCCCTCTGCTCGCCGCTGTCAGTCTCTT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000055083.4
CDS-3UTR CCA 90 bp CACACCACGGTACAGTGGACCACACTATGGATGCTCTGGGAGGCTCCTCATGAACAGGAACACGTCTTCTaGCGACAGCAGTCGGGCAGA +
Preference number: 4 (lower is better)
Translates to: HTTVQWTTLWMLWEAPHEQEHVF*RQQSGR
Trigger: TCTGCCCGACTGCTGTCGCCAGAAGACGTGTTCCTG...TTCATGAGGAGCCTCCCAGAGCATCCATAGTGTGGTCCACTGTACCGTGGTGTG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000107360.3
CDS-3UTR CCA 90 bp AAGAGACTGACAGCGGCGAGCAGAGGGGGAAGTTTGGATCAGGACAAGGATAGACTGCGTGGTTACCGTTaGCCTGAAGGAGGCGCTGCA +
Preference number: 4 (lower is better)
Translates to: KRLTAASRGGSLDQDKDRLRGYR*PEGGAA
Trigger: TGCAGCGCCTCCTTCAGGCCAACGGTAACCACGCAG...TCTATCCTTGTCCTGATCCAAACTTCCCCCTCTGCTCGCCGCTGTCAGTCTCTT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000055083.4
CDS-3UTR GCA 90 bp TCACACACCACGGTACAGTGGACCACACTATGGATGCTCTGGGAGGCTCCTCATGCCAGGTGGACTCTGTaGCCTTGTATTGGACCTCTC +
Preference number: 4 (lower is better)
Translates to: SHTTVQWTTLWMLWEAPHARWTL*PCIGPL
Trigger: GAGAGGTCCAATACAAGGGCACAGAGTCCACCTGGC...ATGAGGAGCCTCCCAGAGCATCCATAGTGTGGTCCACTGTACCGTGGTGTGTGA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000107360.3
CDS-3UTR CCA 90 bp CACACCACGGTACAGTGGACCACACTATGGATGCTCTGGGAGGCTCCTCATGAACCAGCCCTTGCCAGGTaGACTCTGTGCCCTTGTATT +
Preference number: 4 (lower is better)
Translates to: HTTVQWTTLWMLWEAPHEPALAR*TLCPCI
Trigger: AATACAAGGGCACAGAGTCCACCTGGCAAGGGCTGG...TTCATGAGGAGCCTCCCAGAGCATCCATAGTGTGGTCCACTGTACCGTGGTGTG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000107360.3
CDS-3UTR TCA 90 bp CAACAGAGAATCGTCTTTATTGCCATTTACCAAGAGACTGACAGCGGCGAGCAGTGGTTACCGTTGGCCTaGAGGAGGCGCTGCAGCCGT +
Preference number: 4 (lower is better)
Translates to: QQRIVFIAIYQETDSGEQWLPLA*RRRCSR
Trigger: ACGGCTGCAGCGCCTCCTTCAGGCCAACGGTAACCA...CTGCTCGCCGCTGTCAGTCTCTTGGTAAATGGCAATAAAGACGATTCTCTGTTG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000055083.4
CDS-3UTR GCA 90 bp AGAGAATCGTCTTTATTGCCATTTACCAAGAGACTGACAGCGGCGAGCAGAGGGGGCCCATGGTCAGGATaGCAGCTGCGTGGTTACCGT +
Preference number: 4 (lower is better)
Translates to: RESSLLPFTKRLTAASRGGPWSG*QLRGYR
Trigger: ACGGTAACCACGCAGCTGGCATCCTGACCATGGGCC...CCCTCTGCTCGCCGCTGTCAGTCTCTTGGTAAATGGCAATAAAGACGATTCTCT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000055083.4
CDS-3UTR CCA 90 bp CAACAGAGAATCGTCTTTATTGCCATTTACCAAGAGACTGACAGCGGCGAGCAGCAGGAACACGTCTTCTaGCGACAGCAGTCGGGCAGA +
Preference number: 4 (lower is better)
Translates to: QQRIVFIAIYQETDSGEQQEHVF*RQQSGR
Trigger: TCTGCCCGACTGCTGTCGCCAGAAGACGTGTTCCTG...CTGCTCGCCGCTGTCAGTCTCTTGGTAAATGGCAATAAAGACGATTCTCTGTTG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000055083.4
CDS TCA 90 bp CGGCGGCCCATGGTCAGGATGCCAGCTGCGTGGTTACCGTTGGCCTaGAGGAGGCGCTGCAGCCGTCCCTGGAGGCCTGGAGGTCCAGGC +
Preference number: 5 (lower is better)
Translates to: RRPMVRMPAAWLPLA*RRRCSRPWRPGGPG
Trigger: GCCTGGACCTCCAGGCCTCCAGGGACGGCTGCAGCGCCTCCTTCAGGCCAACGGTAACCACGCAGCTGGCATCCTGACCATGGGCCGCCG
70% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000055083.4
CDS CCA 90 bp CTGCGCGGCGGCCCATGGTCAGGATGCCAGCTGCGTGGTTACCGTTaGCCTGAAGGAGGCGCTGCAGCCGTCCCTGGAGGCCTGGAGGTC +
Preference number: 5 (lower is better)
Translates to: LRGGPWSGCQLRGYR*PEGGAAAVPGGLEV
Trigger: GACCTCCAGGCCTCCAGGGACGGCTGCAGCGCCTCCTTCAGGCCAACGGTAACCACGCAGCTGGCATCCTGACCATGGGCCGCCGCGCAG
70% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000055083.4
CDS GCA 90 bp GATGTGGCTCTAGCTCTGCGCCTGCGCGGCGGCCCATGGTCAGGATaGCAGCTGCGTGGTTACCGTTGGCCTGAAGGAGGCGCTGCAGCC +
Preference number: 5 (lower is better)
Translates to: DVALALRLRGGPWSG*QLRGYRWPEGGAAA
Trigger: GGCTGCAGCGCCTCCTTCAGGCCAACGGTAACCACGCAGCTGGCATCCTGACCATGGGCCGCCGCGCAGGCGCAGAGCTAGAGCCACATC
68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000055083.4
CDS CCA 90 bp CAGAGCAGGGATGTGGCTCTAGCTCTGCGCCTGCGCGGCGGCCCATaGTCAGGATGCCAGCTGCGTGGTTACCGTTGGCCTGAAGGAGGC +
Preference number: 5 (lower is better)
Translates to: QSRDVALALRLRGGP*SGCQLRGYRWPEGG
Trigger: GCCTCCTTCAGGCCAACGGTAACCACGCAGCTGGCATCCTGACCATGGGCCGCCGCGCAGGCGCAGAGCTAGAGCCACATCCCTGCTCTG
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000055083.4
CDS CCA 90 bp GTGGACTCTGTGCCCTTGTATTGGACCTCTCTGTGTAGGTCCCGTTaGCCTGAAGGAGGCGCTGCAGCCGTCCCTGGAGGCCTGGAGGTC +
Preference number: 5 (lower is better)
Translates to: VDSVPLYWTSLCRSR*PEGGAAAVPGGLEV
Trigger: GACCTCCAGGCCTCCAGGGACGGCTGCAGCGCCTCCTTCAGGCCAACGGGACCTACACAGAGAGGTCCAATACAAGGGCACAGAGTCCAC
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000107360.3
CDS GCA 72 bp ACACGTCTTCTGGCGACAGCAGTCGGGCAGAGGCTGTaGGTCCACCCCAAGCGACAGCAGCGCCGGCGGCAG +
Preference number: 6 (lower is better)
Translates to: TRLLATAVGQRL*VHPKRQQRRRQ
Trigger: CTGCCGCCGGCGCTGCTGTCGCTTGGGGTGGACGCACAGCCTCTGCCCGACTGCTGTCGCCAGAAGACGTGT
69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000055083.4
ENSMUST00000107360.3
CDS GCA 72 bp TGCGCCTGCGCGGCGGCCCATGGTCAGGATGCCAGCTaGGTGGTTACCGTTGGCCTGAAGGAGGCGCTGCAG +
Preference number: 6 (lower is better)
Translates to: CACAAAHGQDAS*VVTVGLKEALQ
Trigger: CTGCAGCGCCTCCTTCAGGCCAACGGTAACCACGCAGCTGGCATCCTGACCATGGGCCGCCGCGCAGGCGCA
69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000055083.4
CDS GCA 72 bp CTAGCTCTGCGCCTGCGCGGCGGCCCATGGTCAGGATaGCAGCTGCGTGGTTACCGTTGGCCTGAAGGAGGC +
Preference number: 6 (lower is better)
Translates to: LALRLRGGPWSG*QLRGYRWPEGG
Trigger: GCCTCCTTCAGGCCAACGGTAACCACGCAGCTGGCATCCTGACCATGGGCCGCCGCGCAGGCGCAGAGCTAG
68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000055083.4
CDS CCA 72 bp GATGTGGCTCTAGCTCTGCGCCTGCGCGGCGGCCCATaGTCAGGATGCCAGCTGCGTGGTTACCGTTGGCCT +
Preference number: 6 (lower is better)
Translates to: DVALALRLRGGP*SGCQLRGYRWP
Trigger: AGGCCAACGGTAACCACGCAGCTGGCATCCTGACCATGGGCCGCCGCGCAGGCGCAGAGCTAGAGCCACATC
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000055083.4
CDS TCA 72 bp ATGGTCAGGATGCCAGCTGCGTGGTTACCGTTGGCCTaGAGGAGGCGCTGCAGCCGTCCCTGGAGGCCTGGA +
Preference number: 6 (lower is better)
Translates to: MVRMPAAWLPLA*RRRCSRPWRPG
Trigger: TCCAGGCCTCCAGGGACGGCTGCAGCGCCTCCTTCAGGCCAACGGTAACCACGCAGCTGGCATCCTGACCAT
65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000055083.4