Pregenerated sensors for HCN2 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000020331Ensembl transcript IDs: ENSMUST00000020581.3, ENSMUST00000099513.8
Found 65 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | CAGGTCCTCGGCCAGGGCCGCCCTGTCCCTGTCCCAGGTTGGGGCTaGGGCACCGAGGTGATCGCACCCCTCCCTCTCCCGTGCGGCCGC | + |
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Preference number: 1 (lower is better) Translates to: QVLGQGRPVPVPGWG*GTEVIAPLPLPCGR Trigger: GCGGCCGCACGGGAGAGGGAGGGGTGCGATCACCTCGGTGCCTCAGCCCCAACCTGGGACAGGGACAGGGCGGCCCTGGCCGAGGACCTG 74% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000020581.3 ENSMUST00000099513.8 |
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| 3UTR-3UTR TCA 90 bp | CCTCGGAGGCCACCGCACATGCGGGGCACAGCCAGGTCCTCGGCCAGGGCCGCCTGGCTTTGGTGTGGATaGCGGCCCCGCCCGGCCCGC | + |
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Preference number: 2 (lower is better) Translates to: PRRPPHMRGTARSSARAAWLWCG*RPRPAR Trigger: GCGGGCCGGGCGGGGCCGTCATCCACACCAAAGCCA...GGCGGCCCTGGCCGAGGACCTGGCTGTGCCCCGCATGTGCGGTGGCCTCCGAGG 77% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000020581.3 ENSMUST00000099513.8 |
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| 3UTR-3UTR TCA 90 bp | GCCACCGCACATGCGGGGCACAGCCAGGTCCTCGGCCAGGGCCGCCCTGTCCCTTGGCTTTGGTGTGGATaGCGGCCCCGCCCGGCCCGC | + |
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Preference number: 2 (lower is better) Translates to: ATAHAGHSQVLGQGRPVPWLWCG*RPRPAR Trigger: GCGGGCCGGGCGGGGCCGTCATCCACACCAAAGCCA...AGGGACAGGGCGGCCCTGGCCGAGGACCTGGCTGTGCCCCGCATGTGCGGTGGC 76% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000020581.3 ENSMUST00000099513.8 |
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| 3UTR CAA 90 bp | GCACAGCCAGGTCCTCGGCCAGGGCCGCCCTGTCCCTGTCCCAGGTaGGGGCTGAGGCACCGAGGTGATCGCACCCCTCCCTCTCCCGTG | + |
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Preference number: 2 (lower is better) Translates to: AQPGPRPGPPCPCPR*GLRHRGDRTPPSPV Trigger: CACGGGAGAGGGAGGGGTGCGATCACCTCGGTGCCTCAGCCCCAACCTGGGACAGGGACAGGGCGGCCCTGGCCGAGGACCTGGCTGTGC 72% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000020581.3 ENSMUST00000099513.8 |
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| 3UTR TCA 72 bp | GGCCAGGGCCGCCCTGTCCCTGTCCCAGGTTGGGGCTaGGGCACCGAGGTGATCGCACCCCTCCCTCTCCCG | + |
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Preference number: 3 (lower is better) Translates to: GQGRPVPVPGWG*GTEVIAPLPLP Trigger: CGGGAGAGGGAGGGGTGCGATCACCTCGGTGCCTCAGCCCCAACCTGGGACAGGGACAGGGCGGCCCTGGCC 74% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000020581.3 ENSMUST00000099513.8 |
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| 3UTR-3UTR CAA 90 bp | CCTCGGAGGCCACCGCACATGCGGGGCACAGCCAGGTCCTCGGCCAGGGCCGCCTGTCCCTGTCCCAGGTaGGGGCTGAGGCACCGAGGT | + |
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Preference number: 3 (lower is better) Translates to: PRRPPHMRGTARSSARAACPCPR*GLRHRG Trigger: ACCTCGGTGCCTCAGCCCCAACCTGGGACAGGGACA...GGCGGCCCTGGCCGAGGACCTGGCTGTGCCCCGCATGTGCGGTGGCCTCCGAGG 73% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000020581.3 ENSMUST00000099513.8 |
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| 3UTR TCA 72 bp | CTGTCCCTGTCCCAGGTTGGGGCTGAGGCACCGAGGTaGTCGCACCCCTCCCTCTCCCGTGCGGCCGCCGCT | + |
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Preference number: 3 (lower is better) Translates to: LSLSQVGAEAPR*SHPSLSRAAAA Trigger: AGCGGCGGCCGCACGGGAGAGGGAGGGGTGCGATCACCTCGGTGCCTCAGCCCCAACCTGGGACAGGGACAG 72% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000020581.3 ENSMUST00000099513.8 |
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| 3UTR GCA 72 bp | CCGCCTCCTAAGCTACCTACGTCCCTCTATGGCTTCTaGACGGGCACGGGCGGGCGGCGCGAGGCATGGCTT | + |
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Preference number: 3 (lower is better) Translates to: PPPKLPTSLYGF*TGTGGRREAWL Trigger: AAGCCATGCCTCGCGCCGCCCGCCCGTGCCCGTGCAGAAGCCATAGAGGGACGTAGGTAGCTTAGGAGGCGG 68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000020581.3 ENSMUST00000099513.8 |
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| CDS-3UTR TCA 90 bp | CGGGGCACAGCCAGGTCCTCGGCCAGGGCCGCCCTGTCCCTGTCCCAGGTTGGGAGCGCCCGGCGAGGCTaGGTCCCTGCGGTCCGGACT | + |
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Preference number: 4 (lower is better) Translates to: RGTARSSARAALSLSQVGSARRG*VPAVRT Trigger: AGTCCGGACCGCAGGGACTCAGCCTCGCCGGGCGCT...CCCAACCTGGGACAGGGACAGGGCGGCCCTGGCCGAGGACCTGGCTGTGCCCCG 76% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000020581.3 ENSMUST00000099513.8 |
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| CDS-3UTR CCA 90 bp | CCTCGGAGGCCACCGCACATGCGGGGCACAGCCAGGTCCTCGGCCAGGGCCGCCTGCAGGAAGCTAGCCTaGCTGCCGCGCGGCTCACCC | + |
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Preference number: 4 (lower is better) Translates to: PRRPPHMRGTARSSARAACRKLA*LPRGSP Trigger: GGGTGAGCCGCGCGGCAGCCAGGCTAGCTTCCTGCA...GGCGGCCCTGGCCGAGGACCTGGCTGTGCCCCGCATGTGCGGTGGCCTCCGAGG 74% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000020581.3 ENSMUST00000099513.8 |
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| CDS-3UTR CCA 90 bp | GCCACCGCACATGCGGGGCACAGCCAGGTCCTCGGCCAGGGCCGCCCTGTCCCTTGTCAGCTCGCACGCTaGCCGTACGCCGGCCCCTCG | + |
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Preference number: 4 (lower is better) Translates to: ATAHAGHSQVLGQGRPVPCQLAR*PYAGPS Trigger: CGAGGGGCCGGCGTACGGCCAGCGTGCGAGCTGACA...AGGGACAGGGCGGCCCTGGCCGAGGACCTGGCTGTGCCCCGCATGTGCGGTGGC 74% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000020581.3 ENSMUST00000099513.8 |
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| CDS-3UTR TCA 90 bp | CACCGCACATGCGGGGCACAGCCAGGTCCTCGGCCAGGGCCGCCCTGTCCCTGTGGCCGCCCCGCGGCATaGGAACGAAACCTTGGGGCC | + |
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Preference number: 4 (lower is better) Translates to: HRTCGAQPGPRPGPPCPCGRPAA*ERNLGA Trigger: GGCCCCAAGGTTTCGTTCTCATGCCGCGGGGCGGCC...ACAGGGACAGGGCGGCCCTGGCCGAGGACCTGGCTGTGCCCCGCATGTGCGGTG 73% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000020581.3 ENSMUST00000099513.8 |
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| CDS-3UTR TCA 90 bp | CCTCGGAGGCCACCGCACATGCGGGGCACAGCCAGGTCCTCGGCCAGGGCCGCCTACGCCGGCCCCTCGTaGGCAAGCAGATCTCCCCGA | + |
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Preference number: 4 (lower is better) Translates to: PRRPPHMRGTARSSARAAYAGPS*ASRSPR Trigger: TCGGGGAGATCTGCTTGCTCACGAGGGGCCGGCGTA...GGCGGCCCTGGCCGAGGACCTGGCTGTGCCCCGCATGTGCGGTGGCCTCCGAGG 73% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000020581.3 ENSMUST00000099513.8 |
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| CDS-3UTR GCA 90 bp | CCTACGTCCCTCTATGGCTTCTGCACGGGCACGGGCGGGCGGCGCGAGGCATGGGCGAGGCTGAGTCCCTaGGGTCCGGACTGGGCGCGG | + |
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Preference number: 4 (lower is better) Translates to: PTSLYGFCTGTGGRREAWARLSP*GPDWAR Trigger: CCGCGCCCAGTCCGGACCGCAGGGACTCAGCCTCGC...CCATGCCTCGCGCCGCCCGCCCGTGCCCGTGCAGAAGCCATAGAGGGACGTAGG 73% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000020581.3 ENSMUST00000099513.8 |
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| CDS-3UTR CCA 90 bp | CACCGCACATGCGGGGCACAGCCAGGTCCTCGGCCAGGGCCGCCCTGTCCCTGTTGTCAGCTCGCACGCTaGCCGTACGCCGGCCCCTCG | + |
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Preference number: 4 (lower is better) Translates to: HRTCGAQPGPRPGPPCPCCQLAR*PYAGPS Trigger: CGAGGGGCCGGCGTACGGCCAGCGTGCGAGCTGACA...ACAGGGACAGGGCGGCCCTGGCCGAGGACCTGGCTGTGCCCCGCATGTGCGGTG 73% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000020581.3 ENSMUST00000099513.8 |
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| CDS-3UTR CCA 90 bp | TCCTCGGAGGCCACCGCACATGCGGGGCACAGCCAGGTCCTCGGCCAGGGCCGCCGGTGGTGGCGGTGGTaGGAAGAGCCCCACACGCTG | + |
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Preference number: 4 (lower is better) Translates to: SSEATAHAGHSQVLGQGRRWWRW*EEPHTL Trigger: CAGCGTGTGGGGCTCTTCCCACCACCGCCACCACCG...GCGGCCCTGGCCGAGGACCTGGCTGTGCCCCGCATGTGCGGTGGCCTCCGAGGA 73% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000020581.3 ENSMUST00000099513.8 |
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| CDS-3UTR CCA 90 bp | GTGCCCGAGGGAGGTCACCACGGACGCGTGGGCAGGGGCGGGCTGGTTATTGCGGGGGCTTGCTGCGGGTaGCCCTGGCGAGGCTGCAGG | + |
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Preference number: 4 (lower is better) Translates to: VPEGGHHGRVGRGGLVIAGACCG*PWRGCR Trigger: CCTGCAGCCTCGCCAGGGCCACCCGCAGCAAGCCCC...CGCAATAACCAGCCCGCCCCTGCCCACGCGTCCGTGGTGACCTCCCTCGGGCAC 73% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000099513.8 |
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| CDS-3UTR TCA 90 bp | TACGTCCCTCTATGGCTTCTGCACGGGCACGGGCGGGCGGCGCGAGGCATGGCTAGCGCCCGGCGAGGCTaGGTCCCTGCGGTCCGGACT | + |
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Preference number: 4 (lower is better) Translates to: YVPLWLLHGHGRAARGMASARRG*VPAVRT Trigger: AGTCCGGACCGCAGGGACTCAGCCTCGCCGGGCGCT...AGCCATGCCTCGCGCCGCCCGCCCGTGCCCGTGCAGAAGCCATAGAGGGACGTA 72% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000020581.3 ENSMUST00000099513.8 |
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| CDS-3UTR GCA 90 bp | ATTCTTCCTCGGAGGCCACCGCACATGCGGGGCACAGCCAGGTCCTCGGCCAGGGCGAGGCTGAGTCCCTaGGGTCCGGACTGGGCGCGG | + |
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Preference number: 4 (lower is better) Translates to: ILPRRPPHMRGTARSSARARLSP*GPDWAR Trigger: CCGCGCCCAGTCCGGACCGCAGGGACTCAGCCTCGC...CCTGGCCGAGGACCTGGCTGTGCCCCGCATGTGCGGTGGCCTCCGAGGAAGAAT 71% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000020581.3 ENSMUST00000099513.8 |
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| CDS-3UTR CCA 90 bp | CTACGTCCCTCTATGGCTTCTGCACGGGCACGGGCGGGCGGCGCGAGGCATGGCCGGTGGTGGCGGTGGTaGGAAGAGCCCCACACGCTG | + |
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Preference number: 4 (lower is better) Translates to: LRPSMASARARAGGARHGRWWRW*EEPHTL Trigger: CAGCGTGTGGGGCTCTTCCCACCACCGCCACCACCG...GCCATGCCTCGCGCCGCCCGCCCGTGCCCGTGCAGAAGCCATAGAGGGACGTAG 71% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000020581.3 ENSMUST00000099513.8 |
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| CDS-3UTR CCA 90 bp | TACCTACGTCCCTCTATGGCTTCTGCACGGGCACGGGCGGGCGGCGCGAGGCATGGGGCTTGCTGCGGGTaGCCCTGGCGAGGCTGCAGG | + |
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Preference number: 4 (lower is better) Translates to: YLRPSMASARARAGGARHGACCG*PWRGCR Trigger: CCTGCAGCCTCGCCAGGGCCACCCGCAGCAAGCCCC...ATGCCTCGCGCCGCCCGCCCGTGCCCGTGCAGAAGCCATAGAGGGACGTAGGTA 71% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000020581.3 ENSMUST00000099513.8 |
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| CDS-3UTR GCA 90 bp | CTAAGCTACCTACGTCCCTCTATGGCTTCTGCACGGGCACGGGCGGGCGGCGCGTCCGCCGACTCCGGGTaGGAGGGGGTCGTGGGGTTC | + |
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Preference number: 4 (lower is better) Translates to: LSYLRPSMASARARAGGASADSG*EGVVGF Trigger: GAACCCCACGACCCCCTCGCACCCGGAGTCGGCGGA...CGCGCCGCCCGCCCGTGCCCGTGCAGAAGCCATAGAGGGACGTAGGTAGCTTAG 70% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000020581.3 ENSMUST00000099513.8 |
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| CDS-3UTR GCA 90 bp | GGGCCGCCCTGTCCCTGTCCCAGGTTGGGGCTGAGGCACCGAGGTGATCGCACCATGGCCGATGTGACCTaGGGTGGTGGCGGTGGTGGG | + |
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Preference number: 4 (lower is better) Translates to: GPPCPCPRLGLRHRGDRTMADVT*GGGGGG Trigger: CCCACCACCGCCACCACCGCAGGTCACATCGGCCAT...GGTGCGATCACCTCGGTGCCTCAGCCCCAACCTGGGACAGGGACAGGGCGGCCC 70% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000020581.3 ENSMUST00000099513.8 |
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| CDS-3UTR CCA 90 bp | ATTCTTCCTCGGAGGCCACCGCACATGCGGGGCACAGCCAGGTCCTCGGCCAGGTGCAGGAAGCTAGCCTaGCTGCCGCGCGGCTCACCC | + |
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Preference number: 4 (lower is better) Translates to: ILPRRPPHMRGTARSSARCRKLA*LPRGSP Trigger: GGGTGAGCCGCGCGGCAGCCAGGCTAGCTTCCTGCA...CCTGGCCGAGGACCTGGCTGTGCCCCGCATGTGCGGTGGCCTCCGAGGAAGAAT 69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000020581.3 ENSMUST00000099513.8 |
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| CDS-3UTR TCA 90 bp | CACCGCACATGCGGGGCACAGCCAGGTCCTCGGCCAGGGCCGCCCTGTCCCTGTCAGTGGCGTGCCCAATaGACATGGCATAGCAGGTGG | + |
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Preference number: 4 (lower is better) Translates to: HRTCGAQPGPRPGPPCPCQWRAQ*TWHSRW Trigger: CCACCTGCTATGCCATGTTCATTGGGCACGCCACTG...ACAGGGACAGGGCGGCCCTGGCCGAGGACCTGGCTGTGCCCCGCATGTGCGGTG 68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000020581.3 ENSMUST00000099513.8 |
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| CDS-3UTR TCA 90 bp | ATTCTTCCTCGGAGGCCACCGCACATGCGGGGCACAGCCAGGTCCTCGGCCAGGTACGCCGGCCCCTCGTaGGCAAGCAGATCTCCCCGA | + |
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Preference number: 4 (lower is better) Translates to: ILPRRPPHMRGTARSSARYAGPS*ASRSPR Trigger: TCGGGGAGATCTGCTTGCTCACGAGGGGCCGGCGTA...CCTGGCCGAGGACCTGGCTGTGCCCCGCATGTGCGGTGGCCTCCGAGGAAGAAT 68% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000020581.3 ENSMUST00000099513.8 |
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| CDS-3UTR TCA 90 bp | GGGCCGCCCTGTCCCTGTCCCAGGTTGGGGCTGAGGCACCGAGGTGATCGCACCCAGTGGCGTGCCCAATaGACATGGCATAGCAGGTGG | + |
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Preference number: 4 (lower is better) Translates to: GPPCPCPRLGLRHRGDRTQWRAQ*TWHSRW Trigger: CCACCTGCTATGCCATGTTCATTGGGCACGCCACTG...GGTGCGATCACCTCGGTGCCTCAGCCCCAACCTGGGACAGGGACAGGGCGGCCC 67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000020581.3 ENSMUST00000099513.8 |
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| CDS-3UTR GCA 90 bp | CCTACGTCCCTCTATGGCTTCTGCACGGGCACGGGCGGGCGGCGCGAGGCATGGTGGCCAAGCTCTGCCTaGTGCACCATCTCACGGTCA | + |
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Preference number: 4 (lower is better) Translates to: PTSLYGFCTGTGGRREAWWPSSA*CTISRS Trigger: TGACCGTGAGATGGTGCAGCAGGCAGAGCTTGGCCA...CCATGCCTCGCGCCGCCCGCCCGTGCCCGTGCAGAAGCCATAGAGGGACGTAGG 67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000020581.3 ENSMUST00000099513.8 |
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| CDS-3UTR TCA 90 bp | ACCCAGCCTCACCCCCACGCCGGCTTGGCCGTGAAGCCCGCCCCTGGGTGCCCGGTTGTTGAACACACCTaGGCTGAGATCATGCTGAAC | + |
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Preference number: 4 (lower is better) Translates to: TQPHPHAGLAVKPAPGCPVVEHT*AEIMLN Trigger: GTTCAGCATGATCTCAGCTCAGGTGTGTTCAACAAC...CGGGCACCCAGGGGCGGGCTTCACGGCCAAGCCGGCGTGGGGGTGAGGCTGGGT 66% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000099513.8 |
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| CDS-3UTR GCA 90 bp | TACCTACGTCCCTCTATGGCTTCTGCACGGGCACGGGCGGGCGGCGCGAGGCATTTGTTGACGCCGGGCTaGAGAAGCGCCCCGAATTGG | + |
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Preference number: 4 (lower is better) Translates to: YLRPSMASARARAGGARHLLTPG*RSAPNW Trigger: CCAATTCGGGGCGCTTCTGCAGCCCGGCGTCAACAA...ATGCCTCGCGCCGCCCGCCCGTGCCCGTGCAGAAGCCATAGAGGGACGTAGGTA 66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000020581.3 ENSMUST00000099513.8 |
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| CDS-3UTR CCA 90 bp | CCTCGGAGGCCACCGCACATGCGGGGCACAGCCAGGTCCTCGGCCAGGGCCGCCATCTCTTCCCACTGGTaGATATATCGGATGAGCCGT | + |
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Preference number: 4 (lower is better) Translates to: PRRPPHMRGTARSSARAAISSHW*IYRMSR Trigger: ACGGCTCATCCGATATATCCACCAGTGGGAAGAGAT...GGCGGCCCTGGCCGAGGACCTGGCTGTGCCCCGCATGTGCGGTGGCCTCCGAGG 66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000020581.3 ENSMUST00000099513.8 |
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| CDS-3UTR TCA 90 bp | ACATGCGGGGCACAGCCAGGTCCTCGGCCAGGGCCGCCCTGTCCCTGTCCCAGGGCAGTAGCATCATGCTaGTCAGGTTACAGATGCGCA | + |
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Preference number: 4 (lower is better) Translates to: TCGAQPGPRPGPPCPCPRAVASC*SGYRCA Trigger: TGCGCATCTGTAACCTGATCAGCATGATGCTACTGC...CCTGGGACAGGGACAGGGCGGCCCTGGCCGAGGACCTGGCTGTGCCCCGCATGT 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000020581.3 ENSMUST00000099513.8 |
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| CDS-3UTR TCA 90 bp | CGGGGCACAGCCAGGTCCTCGGCCAGGGCCGCCCTGTCCCTGTCCCAGGTTGGGGTTGTTGAACACACCTaGGCTGAGATCATGCTGAAC | + |
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Preference number: 4 (lower is better) Translates to: RGTARSSARAALSLSQVGVVEHT*AEIMLN Trigger: GTTCAGCATGATCTCAGCTCAGGTGTGTTCAACAAC...CCCAACCTGGGACAGGGACAGGGCGGCCCTGGCCGAGGACCTGGCTGTGCCCCG 64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000020581.3 ENSMUST00000099513.8 |
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| CDS-3UTR GCA 90 bp | ATTCTTCCTCGGAGGCCACCGCACATGCGGGGCACAGCCAGGTCCTCGGCCAGGTGGCCAAGCTCTGCCTaGTGCACCATCTCACGGTCA | + |
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Preference number: 4 (lower is better) Translates to: ILPRRPPHMRGTARSSARWPSSA*CTISRS Trigger: TGACCGTGAGATGGTGCAGCAGGCAGAGCTTGGCCA...CCTGGCCGAGGACCTGGCTGTGCCCCGCATGTGCGGTGGCCTCCGAGGAAGAAT 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000020581.3 ENSMUST00000099513.8 |
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| CDS-3UTR CCA 90 bp | CCTCGGAGGCCACCGCACATGCGGGGCACAGCCAGGTCCTCGGCCAGGGCCGCCATGATGGCATTCTCCTaGTTGTTGAACACACCTGAG | + |
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Preference number: 4 (lower is better) Translates to: PRRPPHMRGTARSSARAAMMAFS*LLNTPE Trigger: CTCAGGTGTGTTCAACAACCAGGAGAATGCCATCAT...GGCGGCCCTGGCCGAGGACCTGGCTGTGCCCCGCATGTGCGGTGGCCTCCGAGG 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000020581.3 ENSMUST00000099513.8 |
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| CDS-3UTR TCA 90 bp | GGGCCGCCCTGTCCCTGTCCCAGGTTGGGGCTGAGGCACCGAGGTGATCGCACCGAGCTGAGATCATGCTaGACCTTGTGCAGCAAGATG | + |
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Preference number: 4 (lower is better) Translates to: GPPCPCPRLGLRHRGDRTELRSC*TLCSKM Trigger: CATCTTGCTGCACAAGGTTCAGCATGATCTCAGCTC...GGTGCGATCACCTCGGTGCCTCAGCCCCAACCTGGGACAGGGACAGGGCGGCCC 63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000020581.3 ENSMUST00000099513.8 |
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| CDS-3UTR CCA 90 bp | GCTACCTACGTCCCTCTATGGCTTCTGCACGGGCACGGGCGGGCGGCGCGAGGCTGCTTGTACTTCTCCTaGTATTGGCGCCGTGACGAA | + |
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Preference number: 4 (lower is better) Translates to: ATYVPLWLLHGHGRAARGCLYFS*YWRRDE Trigger: TTCGTCACGGCGCCAATACCAGGAGAAGTACAAGCA...GCCTCGCGCCGCCCGCCCGTGCCCGTGCAGAAGCCATAGAGGGACGTAGGTAGC 63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000020581.3 ENSMUST00000099513.8 |
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| CDS-3UTR CCA 90 bp | CCCTGGGTGCCCGAGGGAGGTCACCACGGACGCGTGGGCAGGGGCGGGCTGGTTATGATGGCATTCTCCTaGTTGTTGAACACACCTGAG | + |
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Preference number: 4 (lower is better) Translates to: PWVPEGGHHGRVGRGGLVMMAFS*LLNTPE Trigger: CTCAGGTGTGTTCAACAACCAGGAGAATGCCATCAT...AACCAGCCCGCCCCTGCCCACGCGTCCGTGGTGACCTCCCTCGGGCACCCAGGG 63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000099513.8 |
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| CDS-3UTR TCA 90 bp | CTACCTACGTCCCTCTATGGCTTCTGCACGGGCACGGGCGGGCGGCGCGAGGCAGAGCTGAGATCATGCTaGACCTTGTGCAGCAAGATG | + |
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Preference number: 4 (lower is better) Translates to: LPTSLYGFCTGTGGRREAELRSC*TLCSKM Trigger: CATCTTGCTGCACAAGGTTCAGCATGATCTCAGCTC...TGCCTCGCGCCGCCCGCCCGTGCCCGTGCAGAAGCCATAGAGGGACGTAGGTAG 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000020581.3 ENSMUST00000099513.8 |
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| CDS-3UTR CCA 90 bp | GGGCCGCCCTGTCCCTGTCCCAGGTTGGGGCTGAGGCACCGAGGTGATCGCACCATCTCTTCCCACTGGTaGATATATCGGATGAGCCGT | + |
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Preference number: 4 (lower is better) Translates to: GPPCPCPRLGLRHRGDRTISSHW*IYRMSR Trigger: ACGGCTCATCCGATATATCCACCAGTGGGAAGAGAT...GGTGCGATCACCTCGGTGCCTCAGCCCCAACCTGGGACAGGGACAGGGCGGCCC 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000020581.3 ENSMUST00000099513.8 |
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| CDS-3UTR TCA 90 bp | TACCTACGTCCCTCTATGGCTTCTGCACGGGCACGGGCGGGCGGCGCGAGGCATGCAGTAGCATCATGCTaGTCAGGTTACAGATGCGCA | + |
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Preference number: 4 (lower is better) Translates to: YLRPSMASARARAGGARHAVASC*SGYRCA Trigger: TGCGCATCTGTAACCTGATCAGCATGATGCTACTGC...ATGCCTCGCGCCGCCCGCCCGTGCCCGTGCAGAAGCCATAGAGGGACGTAGGTA 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000020581.3 ENSMUST00000099513.8 |
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| CDS-3UTR CCA 90 bp | TACCTACGTCCCTCTATGGCTTCTGCACGGGCACGGGCGGGCGGCGCGAGGCATTGCTTGTACTTCTCCTaGTATTGGCGCCGTGACGAA | + |
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Preference number: 4 (lower is better) Translates to: YLRPSMASARARAGGARHCLYFS*YWRRDE Trigger: TTCGTCACGGCGCCAATACCAGGAGAAGTACAAGCA...ATGCCTCGCGCCGCCCGCCCGTGCCCGTGCAGAAGCCATAGAGGGACGTAGGTA 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000020581.3 ENSMUST00000099513.8 |
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| CDS-3UTR CCA 90 bp | CACCGCACATGCGGGGCACAGCCAGGTCCTCGGCCAGGGCCGCCCTGTCCCTGTTATTTGACAATCTCCTaGATGATGGCATTCTCCTGG | + |
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Preference number: 4 (lower is better) Translates to: HRTCGAQPGPRPGPPCPCYLTIS*MMAFSW Trigger: CCAGGAGAATGCCATCATCCAGGAGATTGTCAAATA...ACAGGGACAGGGCGGCCCTGGCCGAGGACCTGGCTGTGCCCCGCATGTGCGGTG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000020581.3 ENSMUST00000099513.8 |
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| CDS-3UTR CCA 90 bp | CTACGTCCCTCTATGGCTTCTGCACGGGCACGGGCGGGCGGCGCGAGGCATGGCAAAATCTCTTCCCACTaGTGGATATATCGGATGAGC | + |
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Preference number: 4 (lower is better) Translates to: LRPSMASARARAGGARHGKISSH*WIYRMS Trigger: GCTCATCCGATATATCCACCAGTGGGAAGAGATTTT...GCCATGCCTCGCGCCGCCCGCCCGTGCCCGTGCAGAAGCCATAGAGGGACGTAG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000020581.3 ENSMUST00000099513.8 |
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| CDS-3UTR CCA 90 bp | TACGTCCCTCTATGGCTTCTGCACGGGCACGGGCGGGCGGCGCGAGGCATGGCTTATTTGACAATCTCCTaGATGATGGCATTCTCCTGG | + |
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Preference number: 4 (lower is better) Translates to: YVPLWLLHGHGRAARGMAYLTIS*MMAFSW Trigger: CCAGGAGAATGCCATCATCCAGGAGATTGTCAAATA...AGCCATGCCTCGCGCCGCCCGCCCGTGCCCGTGCAGAAGCCATAGAGGGACGTA 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000020581.3 ENSMUST00000099513.8 |
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| CDS CCA 90 bp | CCGGGCTGCAGAAGCGCCCCGAATTGGCGCTGCAGGAAGCTAGCCTaGCTGCCGCGCGGCTCACCCGCCGGGCCCGCCTCCTCGCTGCCC | + |
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Preference number: 5 (lower is better) Translates to: PGCRSAPNWRCRKLA*LPRGSPAGPASSLP Trigger: GGGCAGCGAGGAGGCGGGCCCGGCGGGTGAGCCGCGCGGCAGCCAGGCTAGCTTCCTGCAGCGCCAATTCGGGGCGCTTCTGCAGCCCGG 77% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000020581.3 ENSMUST00000099513.8 |
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| CDS-3UTR CAA 90 bp | TCCTCGGAGGCCACCGCACATGCGGGGCACAGCCAGGTCCTCGGCCAGGGCCGCATCCGCAGGGAGAACTaGTTGACGCCGGGCTGCAGA | + |
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Preference number: 5 (lower is better) Translates to: SSEATAHAGHSQVLGQGRIRREN*LTPGCR Trigger: TCTGCAGCCCGGCGTCAACAAGTTCTCCCTGCGGAT...GCGGCCCTGGCCGAGGACCTGGCTGTGCCCCGCATGTGCGGTGGCCTCCGAGGA 70% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000020581.3 ENSMUST00000099513.8 |
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| CDS-3UTR CAA 90 bp | CCTACGTCCCTCTATGGCTTCTGCACGGGCACGGGCGGGCGGCGCGAGGCATGGCGCAGGGAGAACTTGTaGACGCCGGGCTGCAGAAGC | + |
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Preference number: 5 (lower is better) Translates to: PTSLYGFCTGTGGRREAWRRENL*TPGCRS Trigger: GCTTCTGCAGCCCGGCGTCAACAAGTTCTCCCTGCG...CCATGCCTCGCGCCGCCCGCCCGTGCCCGTGCAGAAGCCATAGAGGGACGTAGG 69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000020581.3 ENSMUST00000099513.8 |
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| CDS-3UTR CAA 90 bp | GCTACCTACGTCCCTCTATGGCTTCTGCACGGGCACGGGCGGGCGGCGCGAGGCCGCAGGGAGAACTTGTaGACGCCGGGCTGCAGAAGC | + |
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Preference number: 5 (lower is better) Translates to: ATYVPLWLLHGHGRAARGRRENL*TPGCRS Trigger: GCTTCTGCAGCCCGGCGTCAACAAGTTCTCCCTGCG...GCCTCGCGCCGCCCGCCCGTGCCCGTGCAGAAGCCATAGAGGGACGTAGGTAGC 69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000020581.3 ENSMUST00000099513.8 |
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| CDS-3UTR CAA 90 bp | CCTCGGAGGCCACCGCACATGCGGGGCACAGCCAGGTCCTCGGCCAGGGCCGCCTGCGCATCACTGCACTaGCCAGGTCGTAGGTCATGT | + |
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Preference number: 5 (lower is better) Translates to: PRRPPHMRGTARSSARAACASLH*PGRRSC Trigger: ACATGACCTACGACCTGGCAAGTGCAGTGATGCGCA...GGCGGCCCTGGCCGAGGACCTGGCTGTGCCCCGCATGTGCGGTGGCCTCCGAGG 69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000020581.3 ENSMUST00000099513.8 |
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| CDS-3UTR CAA 90 bp | CGGGGCACAGCCAGGTCCTCGGCCAGGGCCGCCCTGTCCCTGTCCCAGGTTGGGATGGCTGTGACGAAGTaGGGGTCTGCATTGGCAAAC | + |
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Preference number: 5 (lower is better) Translates to: RGTARSSARAALSLSQVGMAVTK*GSALAN Trigger: GTTTGCCAATGCAGACCCCAACTTCGTCACAGCCAT...CCCAACCTGGGACAGGGACAGGGCGGCCCTGGCCGAGGACCTGGCTGTGCCCCG 67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000020581.3 ENSMUST00000099513.8 |
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| CDS-3UTR CAA 90 bp | CTAAGCTACCTACGTCCCTCTATGGCTTCTGCACGGGCACGGGCGGGCGGCGCGATCCGCAGGGAGAACTaGTTGACGCCGGGCTGCAGA | + |
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Preference number: 5 (lower is better) Translates to: LSYLRPSMASARARAGGAIRREN*LTPGCR Trigger: TCTGCAGCCCGGCGTCAACAAGTTCTCCCTGCGGAT...CGCGCCGCCCGCCCGTGCCCGTGCAGAAGCCATAGAGGGACGTAGGTAGCTTAG 66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000020581.3 ENSMUST00000099513.8 |
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| CDS-3UTR CAA 90 bp | CGGGGCACAGCCAGGTCCTCGGCCAGGGCCGCCCTGTCCCTGTCCCAGGTTGGGATGGCATTCTCCTGGTaGTTGAACACACCTGAGCTG | + |
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Preference number: 5 (lower is better) Translates to: RGTARSSARAALSLSQVGMAFSW*LNTPEL Trigger: CAGCTCAGGTGTGTTCAACAACCAGGAGAATGCCAT...CCCAACCTGGGACAGGGACAGGGCGGCCCTGGCCGAGGACCTGGCTGTGCCCCG 66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000020581.3 ENSMUST00000099513.8 |
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| CDS-3UTR CAA 90 bp | AGCCCGCCCCTGGGTGCCCGAGGGAGGTCACCACGGACGCGTGGGCAGGGGCGGCATGTATTGCTCTACTaGCTTGTACTTCTCCTGGTA | + |
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Preference number: 5 (lower is better) Translates to: SPPLGARGRSPRTRGQGRHVLLY*LVLLLV Trigger: TACCAGGAGAAGTACAAGCAAGTAGAGCAATACATG...CCGCCCCTGCCCACGCGTCCGTGGTGACCTCCCTCGGGCACCCAGGGGCGGGCT 64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000099513.8 |
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| CDS-3UTR CAA 90 bp | GGGCCGCCCTGTCCCTGTCCCAGGTTGGGGCTGAGGCACCGAGGTGATCGCACCATGGCTGTGACGAAGTaGGGGTCTGCATTGGCAAAC | + |
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Preference number: 5 (lower is better) Translates to: GPPCPCPRLGLRHRGDRTMAVTK*GSALAN Trigger: GTTTGCCAATGCAGACCCCAACTTCGTCACAGCCAT...GGTGCGATCACCTCGGTGCCTCAGCCCCAACCTGGGACAGGGACAGGGCGGCCC 64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000020581.3 ENSMUST00000099513.8 |
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| CDS-3UTR CAA 90 bp | CTACGTCCCTCTATGGCTTCTGCACGGGCACGGGCGGGCGGCGCGAGGCATGGCATGGCATTCTCCTGGTaGTTGAACACACCTGAGCTG | + |
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Preference number: 5 (lower is better) Translates to: LRPSMASARARAGGARHGMAFSW*LNTPEL Trigger: CAGCTCAGGTGTGTTCAACAACCAGGAGAATGCCAT...GCCATGCCTCGCGCCGCCCGCCCGTGCCCGTGCAGAAGCCATAGAGGGACGTAG 63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000020581.3 ENSMUST00000099513.8 |
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| CDS-3UTR CAA 90 bp | GCCACCGCACATGCGGGGCACAGCCAGGTCCTCGGCCAGGGCCGCCCTGTCCCTTATTGCTCTACTTGCTaGTACTTCTCCTGGTATTGG | + |
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Preference number: 5 (lower is better) Translates to: ATAHAGHSQVLGQGRPVPYCSTC*YFSWYW Trigger: CCAATACCAGGAGAAGTACAAGCAAGTAGAGCAATA...AGGGACAGGGCGGCCCTGGCCGAGGACCTGGCTGTGCCCCGCATGTGCGGTGGC 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000020581.3 ENSMUST00000099513.8 |
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| CDS-3UTR CAA 90 bp | GTGCCCGAGGGAGGTCACCACGGACGCGTGGGCAGGGGCGGGCTGGTTATTGCGTATTGCTCTACTTGCTaGTACTTCTCCTGGTATTGG | + |
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Preference number: 5 (lower is better) Translates to: VPEGGHHGRVGRGGLVIAYCSTC*YFSWYW Trigger: CCAATACCAGGAGAAGTACAAGCAAGTAGAGCAATA...CGCAATAACCAGCCCGCCCCTGCCCACGCGTCCGTGGTGACCTCCCTCGGGCAC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000099513.8 |
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| CDS-3UTR CAA 90 bp | GGGCCGCCCTGTCCCTGTCCCAGGTTGGGGCTGAGGCACCGAGGTGATCGCACCCATGTATTGCTCTACTaGCTTGTACTTCTCCTGGTA | + |
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Preference number: 5 (lower is better) Translates to: GPPCPCPRLGLRHRGDRTHVLLY*LVLLLV Trigger: TACCAGGAGAAGTACAAGCAAGTAGAGCAATACATG...GGTGCGATCACCTCGGTGCCTCAGCCCCAACCTGGGACAGGGACAGGGCGGCCC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000020581.3 ENSMUST00000099513.8 |
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| CDS GCA 72 bp | ACTCGCCATTCGCGCCGCCCTTGGCCGCGCCAGGGGTaGAGGCGCTGTCGCGGCTGCAGAGCCGGGCGCGCG | + |
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Preference number: 6 (lower is better) Translates to: TRHSRRPWPRQG*RRCRGCRAGRA Trigger: CGCGCGCCCGGCTCTGCAGCCGCGACAGCGCCTGCACCCCTGGCGCGGCCAAGGGCGGCGCGAATGGCGAGT 79% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000020581.3 ENSMUST00000099513.8 |
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| CDS CCA 72 bp | CGGGCTCGTCCGCCGACTCCGGGTGCGAGGGGGTCGTaGGGTTCGGGGGTGGCGCGGGTGGTGGCTGAGGCT | + |
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Preference number: 6 (lower is better) Translates to: RARPPTPGARGS*GSGVARVVAEA Trigger: AGCCTCAGCCACCACCCGCGCCACCCCCGAACCCCACGACCCCCTCGCACCCGGAGTCGGCGGACGAGCCCG 78% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 2 transcripts: ENSMUST00000020581.3 ENSMUST00000099513.8 |
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| CDS CCA 72 bp | AGAAGCGCCCCGAATTGGCGCTGCAGGAAGCTAGCCTaGCTGCCGCGCGGCTCACCCGCCGGGCCCGCCTCC | + |
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Preference number: 6 (lower is better) Translates to: RSAPNWRCRKLA*LPRGSPAGPAS Trigger: GGAGGCGGGCCCGGCGGGTGAGCCGCGCGGCAGCCAGGCTAGCTTCCTGCAGCGCCAATTCGGGGCGCTTCT 75% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000020581.3 ENSMUST00000099513.8 |
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| CDS GCA 72 bp | TTGACGCCGGGCTGCAGAAGCGCCCCGAATTGGCGCTaGAGGAAGCTAGCCTGGCTGCCGCGCGGCTCACCC | + |
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Preference number: 6 (lower is better) Translates to: LTPGCRSAPNWR*RKLAWLPRGSP Trigger: GGGTGAGCCGCGCGGCAGCCAGGCTAGCTTCCTGCAGCGCCAATTCGGGGCGCTTCTGCAGCCCGGCGTCAA 71% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000020581.3 ENSMUST00000099513.8 |
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| CDS TCA 72 bp | TGGCCACAGCCTGCTGTAGGGTGGCAATGGCCGATGTaGCCTGCGGTGGTGGCGGTGGTGGGAAGAGCCCCA | + |
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Preference number: 6 (lower is better) Translates to: WPQPAVGWQWPM*PAVVAVVGRAP Trigger: TGGGGCTCTTCCCACCACCGCCACCACCGCAGGTCACATCGGCCATTGCCACCCTACAGCAGGCTGTGGCCA 67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000020581.3 ENSMUST00000099513.8 |
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| CDS GCA 72 bp | ACAGCCTGCTGTAGGGTGGCAATGGCCGATGTGACCTaGGGTGGTGGCGGTGGTGGGAAGAGCCCCACACGC | + |
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Preference number: 6 (lower is better) Translates to: TACCRVAMADVT*GGGGGGKSPTR Trigger: GCGTGTGGGGCTCTTCCCACCACCGCCACCACCGCAGGTCACATCGGCCATTGCCACCCTACAGCAGGCTGT 67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000020581.3 ENSMUST00000099513.8 |
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