Pregenerated sensors for HCFC1R1 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000023904Ensembl transcript IDs: ENSMUST00000024697.5, ENSMUST00000179928.2, ENSMUST00000180140.8
Found 47 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | GGAAGGTCCTGGTGGCCAGGTTTGCAGAAGGACTTCATCCCTTTCTaGGAGTTGCTGGTCTTTGTTGTCAGAAAGAAGATAGGGAGGGAC | + |
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Preference number: 1 (lower is better) Translates to: GRSWWPGLQKDFIPF*ELLVFVVRKKIGRD Trigger: GTCCCTCCCTATCTTCTTTCTGACAACAAAGACCAGCAACTCCCAGAAAGGGATGAAGTCCTTCTGCAAACCTGGCCACCAGGACCTTCC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000024697.5 ENSMUST00000179928.2 ENSMUST00000180140.8 |
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| 3UTR-3UTR GCA 90 bp | ACTGAGGGTTCCACCGAGCTAGTGTCCTCTTGTCAGAGGGAAGGTCCTGGTGGCTCCCTTTCTGGGAGTTaGTGGTCTTTGTTGTCAGAA | + |
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Preference number: 2 (lower is better) Translates to: TEGSTELVSSCQREGPGGSLSGS*WSLLSE Trigger: TTCTGACAACAAAGACCAGCAACTCCCAGAAAGGGA...GCCACCAGGACCTTCCCTCTGACAAGAGGACACTAGCTCGGTGGAACCCTCAGT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000024697.5 ENSMUST00000179928.2 ENSMUST00000180140.8 |
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| 3UTR-3UTR CCA 90 bp | ACTGAGGGTTCCACCGAGCTAGTGTCCTCTTGTCAGAGGGAAGGTCCTGGTGGCGACTTCATCCCTTTCTaGGAGTTGCTGGTCTTTGTT | + |
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Preference number: 2 (lower is better) Translates to: TEGSTELVSSCQREGPGGDFIPF*ELLVFV Trigger: AACAAAGACCAGCAACTCCCAGAAAGGGATGAAGTC...GCCACCAGGACCTTCCCTCTGACAAGAGGACACTAGCTCGGTGGAACCCTCAGT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000024697.5 ENSMUST00000179928.2 ENSMUST00000180140.8 |
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| 3UTR CAA 90 bp | TCCTGGTGGCCAGGTTTGCAGAAGGACTTCATCCCTTTCTGGGAGTaGCTGGTCTTTGTTGTCAGAAAGAAGATAGGGAGGGACACAGGC | + |
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Preference number: 2 (lower is better) Translates to: SWWPGLQKDFIPFWE*LVFVVRKKIGRDTG Trigger: GCCTGTGTCCCTCCCTATCTTCTTTCTGACAACAAAGACCAGCAACTCCCAGAAAGGGATGAAGTCCTTCTGCAAACCTGGCCACCAGGA 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000024697.5 ENSMUST00000179928.2 ENSMUST00000180140.8 |
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| 3UTR-3UTR CCA 90 bp | TTCACTGAGGGTTCCACCGAGCTAGTGTCCTCTTGTCAGAGGGAAGGTCCTGGTGACTTCATCCCTTTCTaGGAGTTGCTGGTCTTTGTT | + |
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Preference number: 2 (lower is better) Translates to: FTEGSTELVSSCQREGPGDFIPF*ELLVFV Trigger: AACAAAGACCAGCAACTCCCAGAAAGGGATGAAGTC...ACCAGGACCTTCCCTCTGACAAGAGGACACTAGCTCGGTGGAACCCTCAGTGAA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000024697.5 ENSMUST00000179928.2 ENSMUST00000180140.8 |
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| 3UTR GCA 72 bp | TCCTCTTGTCAGAGGGAAGGTCCTGGTGGCCAGGTTTaGAGAAGGACTTCATCCCTTTCTGGGAGTTGCTGG | + |
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Preference number: 3 (lower is better) Translates to: SSCQREGPGGQV*RRTSSLSGSCW Trigger: CCAGCAACTCCCAGAAAGGGATGAAGTCCTTCTGCAAACCTGGCCACCAGGACCTTCCCTCTGACAAGAGGA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000024697.5 ENSMUST00000179928.2 ENSMUST00000180140.8 |
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| 3UTR-3UTR CAA 90 bp | TTCACTGAGGGTTCCACCGAGCTAGTGTCCTCTTGTCAGAGGGAAGGTCCTGGTATCCCTTTCTGGGAGTaGCTGGTCTTTGTTGTCAGA | + |
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Preference number: 3 (lower is better) Translates to: FTEGSTELVSSCQREGPGIPFWE*LVFVVR Trigger: TCTGACAACAAAGACCAGCAACTCCCAGAAAGGGAT...ACCAGGACCTTCCCTCTGACAAGAGGACACTAGCTCGGTGGAACCCTCAGTGAA 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000024697.5 ENSMUST00000179928.2 ENSMUST00000180140.8 |
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| 3UTR CCA 72 bp | TGGTGGCCAGGTTTGCAGAAGGACTTCATCCCTTTCTaGGAGTTGCTGGTCTTTGTTGTCAGAAAGAAGATA | + |
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Preference number: 3 (lower is better) Translates to: WWPGLQKDFIPF*ELLVFVVRKKI Trigger: TATCTTCTTTCTGACAACAAAGACCAGCAACTCCCAGAAAGGGATGAAGTCCTTCTGCAAACCTGGCCACCA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000024697.5 ENSMUST00000179928.2 ENSMUST00000180140.8 |
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| CDS-3UTR CCA 90 bp | GAGGGAAGGTCCTGGTGGCCAGGTTTGCAGAAGGACTTCATCCCTTTCTGGGAGCAGGGTAGTAGGGACTaGGGGTATCCCCCAGCCTCA | + |
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Preference number: 4 (lower is better) Translates to: EGRSWWPGLQKDFIPFWEQGSRD*GYPPAS Trigger: TGAGGCTGGGGGATACCCCCAGTCCCTACTACCCTG...CTCCCAGAAAGGGATGAAGTCCTTCTGCAAACCTGGCCACCAGGACCTTCCCTC 59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000024697.5 ENSMUST00000179928.2 ENSMUST00000180140.8 |
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| CDS-3UTR CCA 90 bp | CCCTTTCCCAGGCTGCCTTTCACTGAGGGTTCCACCGAGCTAGTGTCCTCTTGTCACGATATCCCCAGCTaGGGACGCAGGGTAGTAGGG | + |
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Preference number: 4 (lower is better) Translates to: PFPRLPFTEGSTELVSSCHDIPS*GRRVVG Trigger: CCCTACTACCCTGCGTCCCCAGCTGGGGATATCGTG...ACAAGAGGACACTAGCTCGGTGGAACCCTCAGTGAAAGGCAGCCTGGGAAAGGG 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000024697.5 ENSMUST00000180140.8 |
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| CDS-3UTR CCA 90 bp | AGGGAAGGTCCTGGTGGCCAGGTTTGCAGAAGGACTTCATCCCTTTCTGGGAGTGCAAGGGCTCCTGAGTaGTGGCAGGGCTTCGGGAAA | + |
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Preference number: 4 (lower is better) Translates to: REGPGGQVCRRTSSLSGSARAPE*WQGFGK Trigger: TTTCCCGAAGCCCTGCCACCACTCAGGAGCCCTTGC...ACTCCCAGAAAGGGATGAAGTCCTTCTGCAAACCTGGCCACCAGGACCTTCCCT 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000024697.5 ENSMUST00000179928.2 ENSMUST00000180140.8 |
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| CDS-3UTR CCA 90 bp | GTCAGAGGGAAGGTCCTGGTGGCCAGGTTTGCAGAAGGACTTCATCCCTTTCTGGCAAGGGCTCCTGAGTaGTGGCAGGGCTTCGGGAAA | + |
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Preference number: 4 (lower is better) Translates to: VRGKVLVARFAEGLHPFLARAPE*WQGFGK Trigger: TTTCCCGAAGCCCTGCCACCACTCAGGAGCCCTTGC...CAGAAAGGGATGAAGTCCTTCTGCAAACCTGGCCACCAGGACCTTCCCTCTGAC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000024697.5 ENSMUST00000179928.2 ENSMUST00000180140.8 |
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| CDS-3UTR CCA 90 bp | AGGTCCTGGTGGCCAGGTTTGCAGAAGGACTTCATCCCTTTCTGGGAGTTGCTGCCAGAGAAGCAGCTCTaGGCAAGGGCTCCTGAGTGG | + |
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Preference number: 4 (lower is better) Translates to: RSWWPGLQKDFIPFWELLPEKQL*ARAPEW Trigger: CCACTCAGGAGCCCTTGCCCAGAGCTGCTTCTCTGG...CAGCAACTCCCAGAAAGGGATGAAGTCCTTCTGCAAACCTGGCCACCAGGACCT 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000024697.5 ENSMUST00000179928.2 ENSMUST00000180140.8 |
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| CDS-3UTR CCA 90 bp | TTTCCCAGGCTGCCTTTCACTGAGGGTTCCACCGAGCTAGTGTCCTCTTGTCAGCCAGAGAAGCAGCTCTaGGCAAGGGCTCCTGAGTGG | + |
|
Preference number: 4 (lower is better) Translates to: FPRLPFTEGSTELVSSCQPEKQL*ARAPEW Trigger: CCACTCAGGAGCCCTTGCCCAGAGCTGCTTCTCTGG...CTGACAAGAGGACACTAGCTCGGTGGAACCCTCAGTGAAAGGCAGCCTGGGAAA 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000024697.5 ENSMUST00000180140.8 |
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| CDS-3UTR CCA 90 bp | AGGGAAGGTCCTGGTGGCCAGGTTTGCAGAAGGACTTCATCCCTTTCTGGGAGTCAGGGTAGTAGGGACTaGGGGTATCCCCCAGCCTCA | + |
|
Preference number: 4 (lower is better) Translates to: REGPGGQVCRRTSSLSGSQGSRD*GYPPAS Trigger: TGAGGCTGGGGGATACCCCCAGTCCCTACTACCCTG...ACTCCCAGAAAGGGATGAAGTCCTTCTGCAAACCTGGCCACCAGGACCTTCCCT 58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000024697.5 ENSMUST00000179928.2 ENSMUST00000180140.8 |
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| CDS-3UTR CCA 90 bp | AGGTCCTGGTGGCCAGGTTTGCAGAAGGACTTCATCCCTTTCTGGGAGTTGCTGCAGGGTAGTAGGGACTaGGGGTATCCCCCAGCCTCA | + |
|
Preference number: 4 (lower is better) Translates to: RSWWPGLQKDFIPFWELLQGSRD*GYPPAS Trigger: TGAGGCTGGGGGATACCCCCAGTCCCTACTACCCTG...CAGCAACTCCCAGAAAGGGATGAAGTCCTTCTGCAAACCTGGCCACCAGGACCT 58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000024697.5 ENSMUST00000179928.2 ENSMUST00000180140.8 |
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| CDS-3UTR CCA 90 bp | GGGAAGGTCCTGGTGGCCAGGTTTGCAGAAGGACTTCATCCCTTTCTGGGAGTTCACGATATCCCCAGCTaGGGACGCAGGGTAGTAGGG | + |
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Preference number: 4 (lower is better) Translates to: GKVLVARFAEGLHPFLGVHDIPS*GRRVVG Trigger: CCCTACTACCCTGCGTCCCCAGCTGGGGATATCGTG...AACTCCCAGAAAGGGATGAAGTCCTTCTGCAAACCTGGCCACCAGGACCTTCCC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000024697.5 ENSMUST00000179928.2 ENSMUST00000180140.8 |
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| CDS-3UTR CCA 90 bp | AGGGAAGGTCCTGGTGGCCAGGTTTGCAGAAGGACTTCATCCCTTTCTGGGAGTCACGATATCCCCAGCTaGGGACGCAGGGTAGTAGGG | + |
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Preference number: 4 (lower is better) Translates to: REGPGGQVCRRTSSLSGSHDIPS*GRRVVG Trigger: CCCTACTACCCTGCGTCCCCAGCTGGGGATATCGTG...ACTCCCAGAAAGGGATGAAGTCCTTCTGCAAACCTGGCCACCAGGACCTTCCCT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000024697.5 ENSMUST00000179928.2 ENSMUST00000180140.8 |
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| CDS-3UTR CCA 90 bp | TGTCAGAGGGAAGGTCCTGGTGGCCAGGTTTGCAGAAGGACTTCATCCCTTTCTCCAGAGAAGCAGCTCTaGGCAAGGGCTCCTGAGTGG | + |
|
Preference number: 4 (lower is better) Translates to: CQREGPGGQVCRRTSSLSPEKQL*ARAPEW Trigger: CCACTCAGGAGCCCTTGCCCAGAGCTGCTTCTCTGG...AGAAAGGGATGAAGTCCTTCTGCAAACCTGGCCACCAGGACCTTCCCTCTGACA 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000024697.5 ENSMUST00000179928.2 ENSMUST00000180140.8 |
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| CDS-3UTR GCA 90 bp | CCTCTTGTCAGAGGGAAGGTCCTGGTGGCCAGGTTTGCAGAAGGACTTCATCCCGACAGGAACTGCTTGTaGAAAGGTTCCCTGGGGGAA | + |
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Preference number: 4 (lower is better) Translates to: PLVRGKVLVARFAEGLHPDRNCL*KGSLGE Trigger: TTCCCCCAGGGAACCTTTGCACAAGCAGTTCCTGTC...GGGATGAAGTCCTTCTGCAAACCTGGCCACCAGGACCTTCCCTCTGACAAGAGG 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000024697.5 ENSMUST00000180140.8 |
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| CDS-3UTR GCA 90 bp | ACTGAGGGTTCCACCGAGCTAGTGTCCTCTTGTCAGAGGGAAGGTCCTGGTGGCTCCTCAGACAGGAACTaGTTGTGCAAAGGTTCCCTG | + |
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Preference number: 4 (lower is better) Translates to: TEGSTELVSSCQREGPGGSSDRN*LCKGSL Trigger: CAGGGAACCTTTGCACAAGCAGTTCCTGTCTGAGGA...GCCACCAGGACCTTCCCTCTGACAAGAGGACACTAGCTCGGTGGAACCCTCAGT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000024697.5 ENSMUST00000179928.2 ENSMUST00000180140.8 |
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| CDS-3UTR CCA 90 bp | GAGGGAAGGTCCTGGTGGCCAGGTTTGCAGAAGGACTTCATCCCTTTCTGGGAGGTCGGGAGAAATGGGTaGCCATGTTCTCCTCAGACA | + |
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Preference number: 4 (lower is better) Translates to: EGRSWWPGLQKDFIPFWEVGRNG*PCSPQT Trigger: TGTCTGAGGAGAACATGGCCACCCATTTCTCCCGAC...CTCCCAGAAAGGGATGAAGTCCTTCTGCAAACCTGGCCACCAGGACCTTCCCTC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000024697.5 ENSMUST00000179928.2 ENSMUST00000180140.8 |
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| CDS-3UTR CCA 90 bp | CCCTTTCCCAGGCTGCCTTTCACTGAGGGTTCCACCGAGCTAGTGTCCTCTTGTCTGAGTCGGGAGAAATaGGTGGCCATGTTCTCCTCA | + |
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Preference number: 4 (lower is better) Translates to: PFPRLPFTEGSTELVSSCLSREK*VAMFSS Trigger: TGAGGAGAACATGGCCACCCATTTCTCCCGACTCAG...ACAAGAGGACACTAGCTCGGTGGAACCCTCAGTGAAAGGCAGCCTGGGAAAGGG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000024697.5 ENSMUST00000180140.8 |
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| 3UTR CAA 72 bp | GTCCTCTTGTCAGAGGGAAGGTCCTGGTGGCCAGGTTaGCAGAAGGACTTCATCCCTTTCTGGGAGTTGCTG | + |
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Preference number: 4 (lower is better) Translates to: VLLSEGRSWWPG*QKDFIPFWELL Trigger: CAGCAACTCCCAGAAAGGGATGAAGTCCTTCTGCAAACCTGGCCACCAGGACCTTCCCTCTGACAAGAGGAC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000024697.5 ENSMUST00000179928.2 ENSMUST00000180140.8 |
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| CDS-3UTR GCA 90 bp | GGTCCTGGTGGCCAGGTTTGCAGAAGGACTTCATCCCTTTCTGGGAGTTGCTGGGACAGGAACTGCTTGTaGAAAGGTTCCCTGGCGTTT | + |
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Preference number: 4 (lower is better) Translates to: GPGGQVCRRTSSLSGSCWDRNCL*KGSLAF Trigger: AAACGCCAGGGAACCTTTGCACAAGCAGTTCCTGTC...CCAGCAACTCCCAGAAAGGGATGAAGTCCTTCTGCAAACCTGGCCACCAGGACC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000179928.2 |
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| CDS-3UTR CCA 90 bp | GAAGGTCCTGGTGGCCAGGTTTGCAGAAGGACTTCATCCCTTTCTGGGAGTTGCGTCGGGAGAAATGGGTaGCCATGTTCTCCTCAGACA | + |
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Preference number: 4 (lower is better) Translates to: EGPGGQVCRRTSSLSGSCVGRNG*PCSPQT Trigger: TGTCTGAGGAGAACATGGCCACCCATTTCTCCCGAC...GCAACTCCCAGAAAGGGATGAAGTCCTTCTGCAAACCTGGCCACCAGGACCTTC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000024697.5 ENSMUST00000179928.2 ENSMUST00000180140.8 |
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| CDS-3UTR CCA 90 bp | TTCACTGAGGGTTCCACCGAGCTAGTGTCCTCTTGTCAGAGGGAAGGTCCTGGTCTGAGTCGGGAGAAATaGGTGGCCATGTTCTCCTCA | + |
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Preference number: 4 (lower is better) Translates to: FTEGSTELVSSCQREGPGLSREK*VAMFSS Trigger: TGAGGAGAACATGGCCACCCATTTCTCCCGACTCAG...ACCAGGACCTTCCCTCTGACAAGAGGACACTAGCTCGGTGGAACCCTCAGTGAA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000024697.5 ENSMUST00000179928.2 ENSMUST00000180140.8 |
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| CDS-3UTR GCA 90 bp | GTCAGAGGGAAGGTCCTGGTGGCCAGGTTTGCAGAAGGACTTCATCCCTTTCTGTCCTCAGACAGGAACTaGTTGTGCAAAGGTTCCCTG | + |
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Preference number: 4 (lower is better) Translates to: VRGKVLVARFAEGLHPFLSSDRN*LCKGSL Trigger: CAGGGAACCTTTGCACAAGCAGTTCCTGTCTGAGGA...CAGAAAGGGATGAAGTCCTTCTGCAAACCTGGCCACCAGGACCTTCCCTCTGAC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000024697.5 ENSMUST00000179928.2 ENSMUST00000180140.8 |
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| CDS-3UTR GCA 90 bp | TCTTGTCAGAGGGAAGGTCCTGGTGGCCAGGTTTGCAGAAGGACTTCATCCCTTTCCTCAGACAGGAACTaGTTGTGCAAAGGTTCCCTG | + |
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Preference number: 4 (lower is better) Translates to: SCQREGPGGQVCRRTSSLSSDRN*LCKGSL Trigger: CAGGGAACCTTTGCACAAGCAGTTCCTGTCTGAGGA...AAGGGATGAAGTCCTTCTGCAAACCTGGCCACCAGGACCTTCCCTCTGACAAGA 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000024697.5 ENSMUST00000179928.2 ENSMUST00000180140.8 |
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| CDS-3UTR GCA 90 bp | GAGTTGCTGGTCTTTGTTGTCAGAAAGAAGATAGGGAGGGACACAGGCCATCAAGACAGGAACTGCTTGTaGAAAGGTTCCCTGGGGGAA | + |
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Preference number: 4 (lower is better) Translates to: ELLVFVVRKKIGRDTGHQDRNCL*KGSLGE Trigger: TTCCCCCAGGGAACCTTTGCACAAGCAGTTCCTGTC...TTGATGGCCTGTGTCCCTCCCTATCTTCTTTCTGACAACAAAGACCAGCAACTC 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000024697.5 ENSMUST00000180140.8 |
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| CDS-3UTR CCA 90 bp | GTTGCTGGTCTTTGTTGTCAGAAAGAAGATAGGGAGGGACACAGGCCATCAATAGTCGGGAGAAATGGGTaGCCATGTTCTCCTCAGACA | + |
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Preference number: 4 (lower is better) Translates to: VAGLCCQKEDREGHRPSIVGRNG*PCSPQT Trigger: TGTCTGAGGAGAACATGGCCACCCATTTCTCCCGAC...TATTGATGGCCTGTGTCCCTCCCTATCTTCTTTCTGACAACAAAGACCAGCAAC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000024697.5 ENSMUST00000179928.2 ENSMUST00000180140.8 |
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| 3UTR CAA 72 bp | CCAGGTTTGCAGAAGGACTTCATCCCTTTCTGGGAGTaGCTGGTCTTTGTTGTCAGAAAGAAGATAGGGAGG | + |
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Preference number: 4 (lower is better) Translates to: PGLQKDFIPFWE*LVFVVRKKIGR Trigger: CCTCCCTATCTTCTTTCTGACAACAAAGACCAGCAACTCCCAGAAAGGGATGAAGTCCTTCTGCAAACCTGG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000024697.5 ENSMUST00000179928.2 ENSMUST00000180140.8 |
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| CDS CCA 90 bp | GGCTTCAGGAATCAGGCTCCCGGGATAGCGCCAGAGAAGCAGCTCTaGGCAAGGGCTCCTGAGTGGTGGCAGGGCTTCGGGAAAAGTCAC | + |
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Preference number: 5 (lower is better) Translates to: GFRNQAPGIAPEKQL*ARAPEWWQGFGKSH Trigger: GTGACTTTTCCCGAAGCCCTGCCACCACTCAGGAGCCCTTGCCCAGAGCTGCTTCTCTGGCGCTATCCCGGGAGCCTGATTCCTGAAGCC 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000024697.5 ENSMUST00000179928.2 ENSMUST00000180140.8 |
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| CDS CCA 90 bp | TGGCCATGTTCTCCTCAGACAGGAACTGCTTGTGCAAAGGTTCCCTaGCGTTTAGGCCGCGAGTTACCCCAGTGGTGGCCCGTGGGTCCC | + |
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Preference number: 5 (lower is better) Translates to: WPCSPQTGTACAKVP*RLGRELPQWWPVGP Trigger: GGGACCCACGGGCCACCACTGGGGTAACTCGCGGCCTAAACGCCAGGGAACCTTTGCACAAGCAGTTCCTGTCTGAGGAGAACATGGCCA 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000179928.2 |
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| CDS GCA 90 bp | CGGGAGAAATGGGTGGCCATGTTCTCCTCAGACAGGAACTGCTTGTaGAAAGGTTCCCTGGCGTTTAGGCCGCGAGTTACCCCAGTGGTG | + |
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Preference number: 5 (lower is better) Translates to: REKWVAMFSSDRNCL*KGSLAFRPRVTPVV Trigger: CACCACTGGGGTAACTCGCGGCCTAAACGCCAGGGAACCTTTGCACAAGCAGTTCCTGTCTGAGGAGAACATGGCCACCCATTTCTCCCG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000179928.2 |
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| CDS-3UTR CAA 90 bp | ACTGAGGGTTCCACCGAGCTAGTGTCCTCTTGTCAGAGGGAAGGTCCTGGTGGCTCAGACAGGAACTGCTaGTGCAAAGGTTCCCTGGGG | + |
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Preference number: 5 (lower is better) Translates to: TEGSTELVSSCQREGPGGSDRNC*CKGSLG Trigger: CCCCAGGGAACCTTTGCACAAGCAGTTCCTGTCTGA...GCCACCAGGACCTTCCCTCTGACAAGAGGACACTAGCTCGGTGGAACCCTCAGT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000024697.5 ENSMUST00000180140.8 |
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| CDS GCA 90 bp | CGGGAGAAATGGGTGGCCATGTTCTCCTCAGACAGGAACTGCTTGTaGAAAGGTTCCCTGGGGGAAAGACTGGCGTTTAGGCCGCGAGTT | + |
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Preference number: 5 (lower is better) Translates to: REKWVAMFSSDRNCL*KGSLGERLAFRPRV Trigger: AACTCGCGGCCTAAACGCCAGTCTTTCCCCCAGGGAACCTTTGCACAAGCAGTTCCTGTCTGAGGAGAACATGGCCACCCATTTCTCCCG 57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000024697.5 ENSMUST00000180140.8 |
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| CDS GCA 90 bp | CTGAGTCGGGAGAAATGGGTGGCCATGTTCTCCTCAGACAGGAACTaGTTGTGCAAAGGTTCCCTGGGGGAAAGACTGGCGTTTAGGCCG | + |
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Preference number: 5 (lower is better) Translates to: LSREKWVAMFSSDRN*LCKGSLGERLAFRP Trigger: CGGCCTAAACGCCAGTCTTTCCCCCAGGGAACCTTTGCACAAGCAGTTCCTGTCTGAGGAGAACATGGCCACCCATTTCTCCCGACTCAG 57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000024697.5 ENSMUST00000180140.8 |
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| CDS GCA 90 bp | CTGAGTCGGGAGAAATGGGTGGCCATGTTCTCCTCAGACAGGAACTaGTTGTGCAAAGGTTCCCTGGCGTTTAGGCCGCGAGTTACCCCA | + |
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Preference number: 5 (lower is better) Translates to: LSREKWVAMFSSDRN*LCKGSLAFRPRVTP Trigger: TGGGGTAACTCGCGGCCTAAACGCCAGGGAACCTTTGCACAAGCAGTTCCTGTCTGAGGAGAACATGGCCACCCATTTCTCCCGACTCAG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000179928.2 |
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| CDS-3UTR CAA 90 bp | AGGTCCTGGTGGCCAGGTTTGCAGAAGGACTTCATCCCTTTCTGGGAGTTGCTGTCAGACAGGAACTGCTaGTGCAAAGGTTCCCTGGGG | + |
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Preference number: 5 (lower is better) Translates to: RSWWPGLQKDFIPFWELLSDRNC*CKGSLG Trigger: CCCCAGGGAACCTTTGCACAAGCAGTTCCTGTCTGA...CAGCAACTCCCAGAAAGGGATGAAGTCCTTCTGCAAACCTGGCCACCAGGACCT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000024697.5 ENSMUST00000180140.8 |
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| CDS CCA 72 bp | AATCAGGCTCCCGGGATAGCGCCAGAGAAGCAGCTCTaGGCAAGGGCTCCTGAGTGGTGGCAGGGCTTCGGG | + |
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Preference number: 6 (lower is better) Translates to: NQAPGIAPEKQL*ARAPEWWQGFG Trigger: CCCGAAGCCCTGCCACCACTCAGGAGCCCTTGCCCAGAGCTGCTTCTCTGGCGCTATCCCGGGAGCCTGATT 65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000024697.5 ENSMUST00000179928.2 ENSMUST00000180140.8 |
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| CDS CCA 72 bp | TCTCCTCAGACAGGAACTGCTTGTGCAAAGGTTCCCTaGCGTTTAGGCCGCGAGTTACCCCAGTGGTGGCCC | + |
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Preference number: 6 (lower is better) Translates to: SPQTGTACAKVP*RLGRELPQWWP Trigger: GGGCCACCACTGGGGTAACTCGCGGCCTAAACGCCAGGGAACCTTTGCACAAGCAGTTCCTGTCTGAGGAGA 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000179928.2 |
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| CDS CAA 90 bp | AGTCGGGAGAAATGGGTGGCCATGTTCTCCTCAGACAGGAACTGCTaGTGCAAAGGTTCCCTGGCGTTTAGGCCGCGAGTTACCCCAGTG | + |
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Preference number: 6 (lower is better) Translates to: SREKWVAMFSSDRNC*CKGSLAFRPRVTPV Trigger: CACTGGGGTAACTCGCGGCCTAAACGCCAGGGAACCTTTGCACAAGCAGTTCCTGTCTGAGGAGAACATGGCCACCCATTTCTCCCGACT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000179928.2 |
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| CDS GCA 72 bp | TGGGTGGCCATGTTCTCCTCAGACAGGAACTGCTTGTaGAAAGGTTCCCTGGGGGAAAGACTGGCGTTTAGG | + |
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Preference number: 6 (lower is better) Translates to: WVAMFSSDRNCL*KGSLGERLAFR Trigger: CCTAAACGCCAGTCTTTCCCCCAGGGAACCTTTGCACAAGCAGTTCCTGTCTGAGGAGAACATGGCCACCCA 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000024697.5 ENSMUST00000180140.8 |
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| CDS GCA 72 bp | GAGAAATGGGTGGCCATGTTCTCCTCAGACAGGAACTaGTTGTGCAAAGGTTCCCTGGGGGAAAGACTGGCG | + |
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Preference number: 6 (lower is better) Translates to: EKWVAMFSSDRN*LCKGSLGERLA Trigger: CGCCAGTCTTTCCCCCAGGGAACCTTTGCACAAGCAGTTCCTGTCTGAGGAGAACATGGCCACCCATTTCTC 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000024697.5 ENSMUST00000180140.8 |
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| CDS GCA 72 bp | GAGAAATGGGTGGCCATGTTCTCCTCAGACAGGAACTaGTTGTGCAAAGGTTCCCTGGCGTTTAGGCCGCGA | + |
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Preference number: 6 (lower is better) Translates to: EKWVAMFSSDRN*LCKGSLAFRPR Trigger: TCGCGGCCTAAACGCCAGGGAACCTTTGCACAAGCAGTTCCTGTCTGAGGAGAACATGGCCACCCATTTCTC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000179928.2 |
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| CDS CAA 72 bp | AAATGGGTGGCCATGTTCTCCTCAGACAGGAACTGCTaGTGCAAAGGTTCCCTGGCGTTTAGGCCGCGAGTT | + |
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Preference number: 6 (lower is better) Translates to: KWVAMFSSDRNC*CKGSLAFRPRV Trigger: AACTCGCGGCCTAAACGCCAGGGAACCTTTGCACAAGCAGTTCCTGTCTGAGGAGAACATGGCCACCCATTT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000179928.2 |
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