Pregenerated sensors for HCCS (Mus musculus)
Ensembl gene IDs: ENSMUSG00000031352Ensembl transcript IDs: ENSMUST00000033717.9, ENSMUST00000112115.2, ENSMUST00000154638.9
Found 123 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | GGCACTGTGATTGGAGCCCGGCTCTCAAGGTTTACATTACACGACTaGTGGCAAGCTCCAAGTAGGAAGAGGGAATGGGATGAGATAAGA | + |
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Preference number: 1 (lower is better) Translates to: GTVIGARLSRFTLHD*WQAPSRKREWDEIR Trigger: TCTTATCTCATCCCATTCCCTCTTCCTACTTGGAGCTTGCCACCAGTCGTGTAATGTAAACCTTGAGAGCCGGGCTCCAATCACAGTGCC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000033717.9 ENSMUST00000112115.2 |
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| 3UTR CCA 90 bp | GGAACTCACTCTGTAGACCAGGCTAGTCTCAAACTCAGAGATCTATaGAATGCTGGGGTTAAAGGCTTGTGCTACTACTGCCCAGCAAAA | + |
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Preference number: 1 (lower is better) Translates to: GTHSVDQASLKLRDL*NAGVKGLCYYCPAK Trigger: TTTTGCTGGGCAGTAGTAGCACAAGCCTTTAACCCCAGCATTCCATAGATCTCTGAGTTTGAGACTAGCCTGGTCTACAGAGTGAGTTCC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000033717.9 ENSMUST00000112115.2 |
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| 3UTR CCA 90 bp | ACAGCCATCCTAAACTCCAGGTTCATAAGATGTGACTACCTCTTCTaGTCTTTCCAGATACCAAGGAAGTGGTGCCACATATGTATGGAG | + |
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Preference number: 1 (lower is better) Translates to: TAILNSRFIRCDYLF*SFQIPRKWCHICME Trigger: CTCCATACATATGTGGCACCACTTCCTTGGTATCTGGAAAGACCAGAAGAGGTAGTCACATCTTATGAACCTGGAGTTTAGGATGGCTGT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000154638.9 |
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| 3UTR CCA 90 bp | ATGCTTTTAATTCCAGCATTGAGGAGGCAGAGATTGGTGGATCTTTaGGAGTTAGAGATCAGCCTGGTCCACATAGTGATACCCTTTAAT | + |
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Preference number: 1 (lower is better) Translates to: MLLIPALRRQRLVDL*ELEISLVHIVIPFN Trigger: ATTAAAGGGTATCACTATGTGGACCAGGCTGATCTCTAACTCCCAAAGATCCACCAATCTCTGCCTCCTCAATGCTGGAATTAAAAGCAT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000154638.9 |
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| 3UTR CCA 90 bp | TCAATAGTGATGATGAAGTGTCCTCAAGAAAATGGAAGCCACCTATaGGGTCATATGCTTTTAATTCCAGCATTGAGGAGGCAGAGATTG | + |
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Preference number: 1 (lower is better) Translates to: SIVMMKCPQENGSHL*GHMLLIPALRRQRL Trigger: CAATCTCTGCCTCCTCAATGCTGGAATTAAAAGCATATGACCCCATAGGTGGCTTCCATTTTCTTGAGGACACTTCATCATCACTATTGA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000154638.9 |
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| 3UTR CCA 90 bp | TGTTGGTCTCAGTTAGGAAGCAAATTAATAACAGTAATAAGGAAATaGAGTAGACTCCTTACCCCCAAGCAAAGTGTCCTTAGTACACAT | + |
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Preference number: 1 (lower is better) Translates to: CWSQLGSKLITVIRK*SRLLTPKQSVLSTH Trigger: ATGTGTACTAAGGACACTTTGCTTGGGGGTAAGGAGTCTACTCCATTTCCTTATTACTGTTATTAATTTGCTTCCTAACTGAGACCAACA 39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000154638.9 |
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| 3UTR TCA 90 bp | GGCTCCCTATTTACTAACTATACTCTTAGATCAACTATTTTCATATaGTTTCAAATGACCACTAGCACTTGCAATCTAGCACCACTGTCA | + |
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Preference number: 1 (lower is better) Translates to: GSLFTNYTLRSTIFI*FQMTTSTCNLAPLS Trigger: TGACAGTGGTGCTAGATTGCAAGTGCTAGTGGTCATTTGAAATCATATGAAAATAGTTGATCTAAGAGTATAGTTAGTAAATAGGGAGCC 37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000154638.9 |
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| 3UTR TCA 90 bp | GTAAATGATACATACAGAATGCCTACGACGTACATAAAGGCCCTATaGAGAAACCCACCAAACATTTACATTATTGTTTCTGGACAGAAA | + |
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Preference number: 1 (lower is better) Translates to: VNDTYRMPTTYIKAL*RNPPNIYIIVSGQK Trigger: TTTCTGTCCAGAAACAATAATGTAAATGTTTGGTGGGTTTCTTCATAGGGCCTTTATGTACGTCGTAGGCATTCTGTATGTATCATTTAC 37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000154638.9 |
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| 3UTR-3UTR TCA 90 bp | AAAGGCTTGTGCTACTACTGCCCAGCAAAACAACCAGTTTTCAACAGCAAACTCACACTTCTGGCACTGTaGTTGGAGCCCGGCTCTCAA | + |
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Preference number: 2 (lower is better) Translates to: KGLCYYCPAKQPVFNSKLTLLAL*LEPGSQ Trigger: TTGAGAGCCGGGCTCCAATCACAGTGCCAGAAGTGT...GAGTTTGCTGTTGAAAACTGGTTGTTTTGCTGGGCAGTAGTAGCACAAGCCTTT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000033717.9 ENSMUST00000112115.2 |
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| 3UTR-3UTR CCA 90 bp | TTCAGACTGAGTTCGGGGTCAGACCCACTGTTTATTGTGCCTGTCCTCATTTCAAAATCGGACCAACGATaGGCCACAAGGACACTCATG | + |
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Preference number: 2 (lower is better) Translates to: FRLSSGSDPLFIVPVLISKSDQR*ATRTLM Trigger: CATGAGTGTCCTTGTGGCCCATCGTTGGTCCGATTT...TGAAATGAGGACAGGCACAATAAACAGTGGGTCTGACCCCGAACTCAGTCTGAA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000154638.9 |
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| 3UTR-3UTR CCA 90 bp | TTCAGACTGAGTTCGGGGTCAGACCCACTGTTTATTGTGCCTGTCCTCATTTCAGGTCACATCAGTTCCTaGGACAGGAATCAGCAAAGT | + |
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Preference number: 2 (lower is better) Translates to: FRLSSGSDPLFIVPVLISGHISS*DRNQQS Trigger: ACTTTGCTGATTCCTGTCCCAGGAACTGATGTGACC...TGAAATGAGGACAGGCACAATAAACAGTGGGTCTGACCCCGAACTCAGTCTGAA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000154638.9 |
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| 3UTR CAA 90 bp | CTATGGGGTCATATGCTTTTAATTCCAGCATTGAGGAGGCAGAGATaGGTGGATCTTTGGGAGTTAGAGATCAGCCTGGTCCACATAGTG | + |
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Preference number: 2 (lower is better) Translates to: LWGHMLLIPALRRQR*VDLWELEISLVHIV Trigger: CACTATGTGGACCAGGCTGATCTCTAACTCCCAAAGATCCACCAATCTCTGCCTCCTCAATGCTGGAATTAAAAGCATATGACCCCATAG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000154638.9 |
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| 3UTR-3UTR TCA 90 bp | GTTTCTGATGAAAACAAAAGAAAGATGGTCACATCAGTTCCTGGGACAGGAATCCCTTGGGCACTATGGTaGGTTCCAGGTCTGAGGTAC | + |
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Preference number: 2 (lower is better) Translates to: VSDENKRKMVTSVPGTGIPWALW*VPGLRY Trigger: GTACCTCAGACCTGGAACTCACCATAGTGCCCAAGG...GATTCCTGTCCCAGGAACTGATGTGACCATCTTTCTTTTGTTTTCATCAGAAAC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000154638.9 |
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| 3UTR-3UTR GCA 90 bp | GGAACTCACTCTGTAGACCAGGCTAGTCTCAAACTCAGAGATCTATGGAATGCTGGCTTGTGCTACTACTaGCCAGCAAAACAACCAGTT | + |
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Preference number: 2 (lower is better) Translates to: GTHSVDQASLKLRDLWNAGLCYY*PAKQPV Trigger: AACTGGTTGTTTTGCTGGGCAGTAGTAGCACAAGCC...AGCATTCCATAGATCTCTGAGTTTGAGACTAGCCTGGTCTACAGAGTGAGTTCC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000033717.9 ENSMUST00000112115.2 |
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| 3UTR-3UTR GCA 90 bp | GGAACTCACTCTGTAGACCAGGCTAGTCTCAAACTCAGAGATCTATGGAATGCTGGGGTTAAAGGCTTGTaGTACTACTGCCCAGCAAAA | + |
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Preference number: 2 (lower is better) Translates to: GTHSVDQASLKLRDLWNAGVKGL*YYCPAK Trigger: TTTTGCTGGGCAGTAGTAGCACAAGCCTTTAACCCC...AGCATTCCATAGATCTCTGAGTTTGAGACTAGCCTGGTCTACAGAGTGAGTTCC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000033717.9 ENSMUST00000112115.2 |
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| 3UTR CAA 90 bp | CAACCATTGTTCAGAAAAGACCCATCCAGGAACGAATTCTTGCTCTaGGTGAATACTCTCTTGCTTTACCTCCAAATCGGACCAACGATG | + |
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Preference number: 2 (lower is better) Translates to: QPLFRKDPSRNEFLL*VNTLLLYLQIGPTM Trigger: CATCGTTGGTCCGATTTGGAGGTAAAGCAAGAGAGTATTCACCAAGAGCAAGAATTCGTTCCTGGATGGGTCTTTTCTGAACAATGGTTG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000154638.9 |
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| 3UTR-3UTR TCA 90 bp | GGAACTCACTCTGTAGACCAGGCTAGTCTCAAACTCAGAGATCTATGGAATGCTCCCTCAATGACATTATaGGTGCATTTAGTTTGGGGA | + |
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Preference number: 2 (lower is better) Translates to: GTHSVDQASLKLRDLWNAPSMTL*VHLVWG Trigger: TCCCCAAACTAAATGCACTCATAATGTCATTGAGGG...AGCATTCCATAGATCTCTGAGTTTGAGACTAGCCTGGTCTACAGAGTGAGTTCC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000033717.9 ENSMUST00000112115.2 |
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| 3UTR-3UTR TCA 90 bp | ATCTCTAAGCCTGAGATTCAGGTACTTCTGGGTCTAGTTTCCATTTCAGTTTCTGGTGAGTTCCAGGTCTaGGGTACATACAGTCTGAGA | + |
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Preference number: 2 (lower is better) Translates to: ISKPEIQVLLGLVSISVSGEFQV*GTYSLR Trigger: TCTCAGACTGTATGTACCTCAGACCTGGAACTCACC...AGAAACTGAAATGGAAACTAGACCCAGAAGTACCTGAATCTCAGGCTTAGAGAT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000154638.9 |
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| 3UTR-3UTR TCA 90 bp | TTCAGACTGAGTTCGGGGTCAGACCCACTGTTTATTGTGCCTGTCCTCATTTCATCATATGATTTCAAATaGCCACTAGCACTTGCAATC | + |
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Preference number: 2 (lower is better) Translates to: FRLSSGSDPLFIVPVLISSYDFK*PLALAI Trigger: GATTGCAAGTGCTAGTGGTCATTTGAAATCATATGA...TGAAATGAGGACAGGCACAATAAACAGTGGGTCTGACCCCGAACTCAGTCTGAA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000154638.9 |
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| 3UTR-3UTR TCA 90 bp | AAAGGCTTGTGCTACTACTGCCCAGCAAAACAACCAGTTTTCAACAGCAAACTCGAAGAGGGAATGGGATaGGATAAGATAATTTGTCAT | + |
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Preference number: 2 (lower is better) Translates to: KGLCYYCPAKQPVFNSKLEEGMG*DKIICH Trigger: ATGACAAATTATCTTATCTCATCCCATTCCCTCTTC...GAGTTTGCTGTTGAAAACTGGTTGTTTTGCTGGGCAGTAGTAGCACAAGCCTTT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000033717.9 ENSMUST00000112115.2 |
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| 3UTR-3UTR CCA 90 bp | AAATCAGCAGTAACCAGCCACATGATACAATTCTCTCAAATCATCTGGAAATTCGTGTCCTCAAGAAAATaGAAGCCACCTATGGGGTCA | + |
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Preference number: 2 (lower is better) Translates to: KSAVTSHMIQFSQIIWKFVSSRK*KPPMGS Trigger: TGACCCCATAGGTGGCTTCCATTTTCTTGAGGACAC...GAATTTCCAGATGATTTGAGAGAATTGTATCATGTGGCTGGTTACTGCTGATTT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000154638.9 |
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| 3UTR-3UTR CCA 90 bp | ATCTCTAAGCCTGAGATTCAGGTACTTCTGGGTCTAGTTTCCATTTCAGTTTCTTCTTGTAGGCACTTCTaGTCTCTTCTTACTTTGAAT | + |
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Preference number: 2 (lower is better) Translates to: ISKPEIQVLLGLVSISVSSCRHF*SLLTLN Trigger: ATTCAAAGTAAGAAGAGACCAGAAGTGCCTACAAGA...AGAAACTGAAATGGAAACTAGACCCAGAAGTACCTGAATCTCAGGCTTAGAGAT 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000154638.9 |
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| 3UTR-3UTR CCA 90 bp | TATGGTGCTGTATCCTATTCTGGATTGAGTCTCATTTCTAAGTTTCCCAAAGAACCATGGAATACATCCTaGCTAATCTGTGTCATGTAC | + |
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Preference number: 2 (lower is better) Translates to: YGAVSYSGLSLISKFPKEPWNTS*LICVMY Trigger: GTACATGACACAGATTAGCCAGGATGTATTCCATGG...TTCTTTGGGAAACTTAGAAATGAGACTCAATCCAGAATAGGATACAGCACCATA 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000154638.9 |
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| 3UTR-3UTR TCA 90 bp | AAATCAGCAGTAACCAGCCACATGATACAATTCTCTCAAATCATCTGGAAATTCAATTCTTGCTCTTGGTaGATACTCTCTTGCTTTACC | + |
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Preference number: 2 (lower is better) Translates to: KSAVTSHMIQFSQIIWKFNSCSW*ILSCFT Trigger: GGTAAAGCAAGAGAGTATTCACCAAGAGCAAGAATT...GAATTTCCAGATGATTTGAGAGAATTGTATCATGTGGCTGGTTACTGCTGATTT 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000154638.9 |
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| 3UTR-3UTR CCA 90 bp | ATCTCTAAGCCTGAGATTCAGGTACTTCTGGGTCTAGTTTCCATTTCAGTTTCTAAATATAAATTAGGTTaGGTGTTGGTCTCAGTTAGG | + |
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Preference number: 2 (lower is better) Translates to: ISKPEIQVLLGLVSISVSKYKLG*VLVSVR Trigger: CCTAACTGAGACCAACACCCAACCTAATTTATATTT...AGAAACTGAAATGGAAACTAGACCCAGAAGTACCTGAATCTCAGGCTTAGAGAT 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000154638.9 |
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| 3UTR CCA 72 bp | ATTGGAGCCCGGCTCTCAAGGTTTACATTACACGACTaGTGGCAAGCTCCAAGTAGGAAGAGGGAATGGGAT | + |
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Preference number: 3 (lower is better) Translates to: IGARLSRFTLHD*WQAPSRKREWD Trigger: ATCCCATTCCCTCTTCCTACTTGGAGCTTGCCACCAGTCGTGTAATGTAAACCTTGAGAGCCGGGCTCCAAT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000033717.9 ENSMUST00000112115.2 |
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| 3UTR CCA 72 bp | ATACTCTCTTGCTTTACCTCCAAATCGGACCAACGATaGGCCACAAGGACACTCATGAGCATGAAGGGCTTC | + |
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Preference number: 3 (lower is better) Translates to: ILSCFTSKSDQR*ATRTLMSMKGF Trigger: GAAGCCCTTCATGCTCATGAGTGTCCTTGTGGCCCATCGTTGGTCCGATTTGGAGGTAAAGCAAGAGAGTAT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000154638.9 |
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| 3UTR CCA 72 bp | TCTGTAGACCAGGCTAGTCTCAAACTCAGAGATCTATaGAATGCTGGGGTTAAAGGCTTGTGCTACTACTGC | + |
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Preference number: 3 (lower is better) Translates to: SVDQASLKLRDL*NAGVKGLCYYC Trigger: GCAGTAGTAGCACAAGCCTTTAACCCCAGCATTCCATAGATCTCTGAGTTTGAGACTAGCCTGGTCTACAGA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000033717.9 ENSMUST00000112115.2 |
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| 3UTR CCA 72 bp | ATTCCAGCATTGAGGAGGCAGAGATTGGTGGATCTTTaGGAGTTAGAGATCAGCCTGGTCCACATAGTGATA | + |
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Preference number: 3 (lower is better) Translates to: IPALRRQRLVDL*ELEISLVHIVI Trigger: TATCACTATGTGGACCAGGCTGATCTCTAACTCCCAAAGATCCACCAATCTCTGCCTCCTCAATGCTGGAAT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000154638.9 |
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| 3UTR-3UTR CAA 90 bp | TTCAGACTGAGTTCGGGGTCAGACCCACTGTTTATTGTGCCTGTCCTCATTTCAAATCTCCTTCCACGCTaGCTCATTATTCTGATTGTG | + |
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Preference number: 3 (lower is better) Translates to: FRLSSGSDPLFIVPVLISNLLPR*LIILIV Trigger: CACAATCAGAATAATGAGCAAGCGTGGAAGGAGATT...TGAAATGAGGACAGGCACAATAAACAGTGGGTCTGACCCCGAACTCAGTCTGAA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000154638.9 |
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| 3UTR TCA 72 bp | ATTCTTTTGAGTTTGAGGACACCTTGGGCACTATGGTaGGTTCCAGGTCTGAGGTACATACAGTCTGAGAAC | + |
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Preference number: 3 (lower is better) Translates to: ILLSLRTPWALW*VPGLRYIQSEN Trigger: GTTCTCAGACTGTATGTACCTCAGACCTGGAACTCACCATAGTGCCCAAGGTGTCCTCAAACTCAAAAGAAT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000154638.9 |
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| 3UTR TCA 72 bp | GCTCACAGCCATCCTAAACTCCAGGTTCATAAGATGTaGCTACCTCTTCTGGTCTTTCCAGATACCAAGGAA | + |
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Preference number: 3 (lower is better) Translates to: AHSHPKLQVHKM*LPLLVFPDTKE Trigger: TTCCTTGGTATCTGGAAAGACCAGAAGAGGTAGTCACATCTTATGAACCTGGAGTTTAGGATGGCTGTGAGC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000154638.9 |
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| 3UTR CCA 72 bp | CTAAACTCCAGGTTCATAAGATGTGACTACCTCTTCTaGTCTTTCCAGATACCAAGGAAGTGGTGCCACATA | + |
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Preference number: 3 (lower is better) Translates to: LNSRFIRCDYLF*SFQIPRKWCHI Trigger: TATGTGGCACCACTTCCTTGGTATCTGGAAAGACCAGAAGAGGTAGTCACATCTTATGAACCTGGAGTTTAG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000154638.9 |
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| 3UTR-3UTR CAA 90 bp | CCATGGAATACATCCTGGCTAATCTGTGTCATGTACTCTTGTAGGCACTTCTGGAACGAATTCTTGCTCTaGGTGAATACTCTCTTGCTT | + |
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Preference number: 3 (lower is better) Translates to: PWNTSWLICVMYSCRHFWNEFLL*VNTLLL Trigger: AAGCAAGAGAGTATTCACCAAGAGCAAGAATTCGTT...CCAGAAGTGCCTACAAGAGTACATGACACAGATTAGCCAGGATGTATTCCATGG 43% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000154638.9 |
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| 3UTR-3UTR CAA 90 bp | ATCTCTAAGCCTGAGATTCAGGTACTTCTGGGTCTAGTTTCCATTTCAGTTTCTGCTGCTTGTCAACCATaGTTCAGAAAAGACCCATCC | + |
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Preference number: 3 (lower is better) Translates to: ISKPEIQVLLGLVSISVSAACQP*FRKDPS Trigger: GGATGGGTCTTTTCTGAACAATGGTTGACAAGCAGC...AGAAACTGAAATGGAAACTAGACCCAGAAGTACCTGAATCTCAGGCTTAGAGAT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000154638.9 |
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| 3UTR CCA 72 bp | ATGATGAAGTGTCCTCAAGAAAATGGAAGCCACCTATaGGGTCATATGCTTTTAATTCCAGCATTGAGGAGG | + |
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Preference number: 3 (lower is better) Translates to: MMKCPQENGSHL*GHMLLIPALRR Trigger: CCTCCTCAATGCTGGAATTAAAAGCATATGACCCCATAGGTGGCTTCCATTTTCTTGAGGACACTTCATCAT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000154638.9 |
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| 3UTR GCA 72 bp | ATTAAAAAGAATGTCCCCCTGCCTGATCCAATACCCTaGAAGCCTTATTTATATGCTGAGAGTCTGAATGCA | + |
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Preference number: 3 (lower is better) Translates to: IKKNVPLPDPIP*KPYLYAESLNA Trigger: TGCATTCAGACTCTCAGCATATAAATAAGGCTTGCAGGGTATTGGATCAGGCAGGGGGACATTCTTTTTAAT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000154638.9 |
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| 3UTR CCA 72 bp | TGGCTAATCTGTGTCATGTACTCTTGTAGGCACTTCTaGTCTCTTCTTACTTTGAATGTCTTAGTCTGCCTT | + |
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Preference number: 3 (lower is better) Translates to: WLICVMYSCRHF*SLLTLNVLVCL Trigger: AAGGCAGACTAAGACATTCAAAGTAAGAAGAGACCAGAAGTGCCTACAAGAGTACATGACACAGATTAGCCA 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000154638.9 |
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| 3UTR-3UTR CAA 90 bp | AAAGGCTTGTGCTACTACTGCCCAGCAAAACAACCAGTTTTCAACAGCAAACTCGTGATCAGCTTTTCATaGATAGTTACATATTGGGAC | + |
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Preference number: 3 (lower is better) Translates to: KGLCYYCPAKQPVFNSKLVISFS*IVTYWD Trigger: GTCCCAATATGTAACTATCAATGAAAAGCTGATCAC...GAGTTTGCTGTTGAAAACTGGTTGTTTTGCTGGGCAGTAGTAGCACAAGCCTTT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000033717.9 ENSMUST00000112115.2 |
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| 3UTR-3UTR CAA 90 bp | TATGGTGCTGTATCCTATTCTGGATTGAGTCTCATTTCTAAGTTTCCCAAAGAAGAGATTGGTGGATCTTaGGGAGTTAGAGATCAGCCT | + |
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Preference number: 3 (lower is better) Translates to: YGAVSYSGLSLISKFPKEEIGGS*GVRDQP Trigger: AGGCTGATCTCTAACTCCCAAAGATCCACCAATCTC...TTCTTTGGGAAACTTAGAAATGAGACTCAATCCAGAATAGGATACAGCACCATA 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000154638.9 |
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| 3UTR-3UTR CAA 90 bp | TATGGTGCTGTATCCTATTCTGGATTGAGTCTCATTTCTAAGTTTCCCAAAGAATTGAGGAGGCAGAGATaGGTGGATCTTTGGGAGTTA | + |
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Preference number: 3 (lower is better) Translates to: YGAVSYSGLSLISKFPKELRRQR*VDLWEL Trigger: TAACTCCCAAAGATCCACCAATCTCTGCCTCCTCAA...TTCTTTGGGAAACTTAGAAATGAGACTCAATCCAGAATAGGATACAGCACCATA 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000154638.9 |
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| 3UTR-3UTR CAA 90 bp | TATGGTGCTGTATCCTATTCTGGATTGAGTCTCATTTCTAAGTTTCCCAAAGAACTTTTAATTCCAGCATaGAGGAGGCAGAGATTGGTG | + |
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Preference number: 3 (lower is better) Translates to: YGAVSYSGLSLISKFPKELLIPA*RRQRLV Trigger: CACCAATCTCTGCCTCCTCAATGCTGGAATTAAAAG...TTCTTTGGGAAACTTAGAAATGAGACTCAATCCAGAATAGGATACAGCACCATA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000154638.9 |
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| 3UTR TCA 72 bp | CAGTCCTACCTGTATGACAGCTTCCCCATGATATCTTaGGTTTATAGAAATTCAGGTATTCAGAAGCCATCA | + |
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Preference number: 3 (lower is better) Translates to: QSYLYDSFPMIS*VYRNSGIQKPS Trigger: TGATGGCTTCTGAATACCTGAATTTCTATAAACTCAAGATATCATGGGGAAGCTGTCATACAGGTAGGACTG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000154638.9 |
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| 3UTR-3UTR CAA 90 bp | TATGGTGCTGTATCCTATTCTGGATTGAGTCTCATTTCTAAGTTTCCCAAAGAATTGGTGAATACTCTCTaGCTTTACCTCCAAATCGGA | + |
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Preference number: 3 (lower is better) Translates to: YGAVSYSGLSLISKFPKELVNTL*LYLQIG Trigger: TCCGATTTGGAGGTAAAGCAAGAGAGTATTCACCAA...TTCTTTGGGAAACTTAGAAATGAGACTCAATCCAGAATAGGATACAGCACCATA 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000154638.9 |
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| 3UTR GCA 72 bp | AAATCAGGTGAAAGTAGATTAAAAAGAATGTCCCCCTaGCTGATCCAATACCCTGCAAGCCTTATTTATATG | + |
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Preference number: 3 (lower is better) Translates to: KSGESRLKRMSP*LIQYPASLIYM Trigger: CATATAAATAAGGCTTGCAGGGTATTGGATCAGGCAGGGGGACATTCTTTTTAATCTACTTTCACCTGATTT 39% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000154638.9 |
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| 3UTR CCA 72 bp | CAGTTAGGAAGCAAATTAATAACAGTAATAAGGAAATaGAGTAGACTCCTTACCCCCAAGCAAAGTGTCCTT | + |
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Preference number: 3 (lower is better) Translates to: QLGSKLITVIRK*SRLLTPKQSVL Trigger: AAGGACACTTTGCTTGGGGGTAAGGAGTCTACTCCATTTCCTTATTACTGTTATTAATTTGCTTCCTAACTG 39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000154638.9 |
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| 3UTR-3UTR CAA 90 bp | AAATCAGCAGTAACCAGCCACATGATACAATTCTCTCAAATCATCTGGAAATTCTGGTCTCTTCTTACTTaGAATGTCTTAGTCTGCCTT | + |
|
Preference number: 3 (lower is better) Translates to: KSAVTSHMIQFSQIIWKFWSLLT*NVLVCL Trigger: AAGGCAGACTAAGACATTCAAAGTAAGAAGAGACCA...GAATTTCCAGATGATTTGAGAGAATTGTATCATGTGGCTGGTTACTGCTGATTT 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000154638.9 |
||
| 3UTR TCA 72 bp | ACATACAGAATGCCTACGACGTACATAAAGGCCCTATaGAGAAACCCACCAAACATTTACATTATTGTTTCT | + |
|
Preference number: 3 (lower is better) Translates to: TYRMPTTYIKAL*RNPPNIYIIVS Trigger: AGAAACAATAATGTAAATGTTTGGTGGGTTTCTTCATAGGGCCTTTATGTACGTCGTAGGCATTCTGTATGT 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000154638.9 |
||
| CDS-3UTR CCA 90 bp | TTTACATTACACGACTGGTGGCAAGCTCCAAGTAGGAAGAGGGAATGGGATGAGTGTTGCTGCAGTCACTaGACAGCCTTTCCTTTGCCC | + |
|
Preference number: 4 (lower is better) Translates to: FTLHDWWQAPSRKREWDECCCSH*TAFPLP Trigger: GGGCAAAGGAAAGGCTGTCCAGTGACTGCAGCAACA...CTCATCCCATTCCCTCTTCCTACTTGGAGCTTGCCACCAGTCGTGTAATGTAAA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000033717.9 ENSMUST00000112115.2 |
||
| 3UTR CAA 72 bp | CCGAGTCAGGAGGATTCTTTTGAGTTTGAGGACACCTaGGGCACTATGGTGAGTTCCAGGTCTGAGGTACAT | + |
|
Preference number: 4 (lower is better) Translates to: PSQEDSFEFEDT*GTMVSSRSEVH Trigger: ATGTACCTCAGACCTGGAACTCACCATAGTGCCCAAGGTGTCCTCAAACTCAAAAGAATCCTCCTGACTCGG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000154638.9 |
||
| CDS-3UTR TCA 90 bp | TTTACATTACACGACTGGTGGCAAGCTCCAAGTAGGAAGAGGGAATGGGATGAGCCATACTGCAGAGAATaGATCAAAGGCAGGACGCAC | + |
|
Preference number: 4 (lower is better) Translates to: FTLHDWWQAPSRKREWDEPYCRE*IKGRTH Trigger: GTGCGTCCTGCCTTTGATTCATTCTCTGCAGTATGG...CTCATCCCATTCCCTCTTCCTACTTGGAGCTTGCCACCAGTCGTGTAATGTAAA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000033717.9 ENSMUST00000112115.2 |
||
| CDS-3UTR GCA 90 bp | TTTACATTACACGACTGGTGGCAAGCTCCAAGTAGGAAGAGGGAATGGGATGAGGGACAGCCTTTCCTTTaGCCTTTATGCATCGGGCAT | + |
|
Preference number: 4 (lower is better) Translates to: FTLHDWWQAPSRKREWDEGQPFL*PLCIGH Trigger: ATGCCCGATGCATAAAGGGCAAAGGAAAGGCTGTCC...CTCATCCCATTCCCTCTTCCTACTTGGAGCTTGCCACCAGTCGTGTAATGTAAA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000033717.9 ENSMUST00000112115.2 |
||
| CDS-3UTR GCA 90 bp | GGAACTCACTCTGTAGACCAGGCTAGTCTCAAACTCAGAGATCTATGGAATGCTAGCAGGCACAGTGTGTaGTTTGCTCTCACTGGTCAG | + |
|
Preference number: 4 (lower is better) Translates to: GTHSVDQASLKLRDLWNASRHSV*FALTGQ Trigger: CTGACCAGTGAGAGCAAAGCACACACTGTGCCTGCT...AGCATTCCATAGATCTCTGAGTTTGAGACTAGCCTGGTCTACAGAGTGAGTTCC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000033717.9 ENSMUST00000112115.2 |
||
| CDS-3UTR GCA 90 bp | CCATGGAATACATCCTGGCTAATCTGTGTCATGTACTCTTGTAGGCACTTCTGGAGCAGGCACAGTGTGTaGTTTGCTCTCACTGGTCAG | + |
|
Preference number: 4 (lower is better) Translates to: PWNTSWLICVMYSCRHFWSRHSV*FALTGQ Trigger: CTGACCAGTGAGAGCAAAGCACACACTGTGCCTGCT...CCAGAAGTGCCTACAAGAGTACATGACACAGATTAGCCAGGATGTATTCCATGG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000154638.9 |
||
| CDS-3UTR CCA 90 bp | GGAACTCACTCTGTAGACCAGGCTAGTCTCAAACTCAGAGATCTATGGAATGCTTGTTGCTGCAGTCACTaGACAGCCTTTCCTTTGCCC | + |
|
Preference number: 4 (lower is better) Translates to: GTHSVDQASLKLRDLWNACCCSH*TAFPLP Trigger: GGGCAAAGGAAAGGCTGTCCAGTGACTGCAGCAACA...AGCATTCCATAGATCTCTGAGTTTGAGACTAGCCTGGTCTACAGAGTGAGTTCC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000033717.9 ENSMUST00000112115.2 |
||
| CDS-3UTR GCA 90 bp | TTTACATTACACGACTGGTGGCAAGCTCCAAGTAGGAAGAGGGAATGGGATGAGTTCCTTTGCCCTTTATaGATCGGGCATCCTGAAGGT | + |
|
Preference number: 4 (lower is better) Translates to: FTLHDWWQAPSRKREWDEFLCPL*IGHPEG Trigger: ACCTTCAGGATGCCCGATGCATAAAGGGCAAAGGAA...CTCATCCCATTCCCTCTTCCTACTTGGAGCTTGCCACCAGTCGTGTAATGTAAA 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000033717.9 ENSMUST00000112115.2 |
||
| CDS-3UTR GCA 90 bp | TTCAGACTGAGTTCGGGGTCAGACCCACTGTTTATTGTGCCTGTCCTCATTTCATTCCTTTGCCCTTTATaGATCGGGCATCCTGAAGGT | + |
|
Preference number: 4 (lower is better) Translates to: FRLSSGSDPLFIVPVLISFLCPL*IGHPEG Trigger: ACCTTCAGGATGCCCGATGCATAAAGGGCAAAGGAA...TGAAATGAGGACAGGCACAATAAACAGTGGGTCTGACCCCGAACTCAGTCTGAA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000154638.9 |
||
| CDS-3UTR CCA 90 bp | AAAGGCTTGTGCTACTACTGCCCAGCAAAACAACCAGTTTTCAACAGCAAACTCTGGCTGATCTGGGGATaGTGTCTGATTAGGTGGTGG | + |
|
Preference number: 4 (lower is better) Translates to: KGLCYYCPAKQPVFNSKLWLIWG*CLIRWW Trigger: CCACCACCTAATCAGACACCATCCCCAGATCAGCCA...GAGTTTGCTGTTGAAAACTGGTTGTTTTGCTGGGCAGTAGTAGCACAAGCCTTT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000033717.9 ENSMUST00000112115.2 |
||
| CDS-3UTR TCA 90 bp | AAAGGCTTGTGCTACTACTGCCCAGCAAAACAACCAGTTTTCAACAGCAAACTCCCATACTGCAGAGAATaGATCAAAGGCAGGACGCAC | + |
|
Preference number: 4 (lower is better) Translates to: KGLCYYCPAKQPVFNSKLPYCRE*IKGRTH Trigger: GTGCGTCCTGCCTTTGATTCATTCTCTGCAGTATGG...GAGTTTGCTGTTGAAAACTGGTTGTTTTGCTGGGCAGTAGTAGCACAAGCCTTT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000033717.9 ENSMUST00000112115.2 |
||
| CDS-3UTR GCA 90 bp | GGAACTCACTCTGTAGACCAGGCTAGTCTCAAACTCAGAGATCTATGGAATGCTTTCCTTTGCCCTTTATaGATCGGGCATCCTGAAGGT | + |
|
Preference number: 4 (lower is better) Translates to: GTHSVDQASLKLRDLWNAFLCPL*IGHPEG Trigger: ACCTTCAGGATGCCCGATGCATAAAGGGCAAAGGAA...AGCATTCCATAGATCTCTGAGTTTGAGACTAGCCTGGTCTACAGAGTGAGTTCC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000033717.9 ENSMUST00000112115.2 |
||
| CDS-3UTR GCA 90 bp | AAAGGCTTGTGCTACTACTGCCCAGCAAAACAACCAGTTTTCAACAGCAAACTCGGACAGCCTTTCCTTTaGCCTTTATGCATCGGGCAT | + |
|
Preference number: 4 (lower is better) Translates to: KGLCYYCPAKQPVFNSKLGQPFL*PLCIGH Trigger: ATGCCCGATGCATAAAGGGCAAAGGAAAGGCTGTCC...GAGTTTGCTGTTGAAAACTGGTTGTTTTGCTGGGCAGTAGTAGCACAAGCCTTT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000033717.9 ENSMUST00000112115.2 |
||
| CDS-3UTR GCA 90 bp | GTTTCTGATGAAAACAAAAGAAAGATGGTCACATCAGTTCCTGGGACAGGAATCGGTCAGGTCAGATGTTaGTGCAGTCACTGGACAGCC | + |
|
Preference number: 4 (lower is better) Translates to: VSDENKRKMVTSVPGTGIGQVRC*CSHWTA Trigger: GGCTGTCCAGTGACTGCAGCAACATCTGACCTGACC...GATTCCTGTCCCAGGAACTGATGTGACCATCTTTCTTTTGTTTTCATCAGAAAC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000154638.9 |
||
| CDS-3UTR CCA 90 bp | AAAGGCTTGTGCTACTACTGCCCAGCAAAACAACCAGTTTTCAACAGCAAACTCAAATCGGACCAACGATaGGCCACAAGGACACTCATG | + |
|
Preference number: 4 (lower is better) Translates to: KGLCYYCPAKQPVFNSKLKSDQR*ATRTLM Trigger: CATGAGTGTCCTTGTGGCCCATCGTTGGTCCGATTT...GAGTTTGCTGTTGAAAACTGGTTGTTTTGCTGGGCAGTAGTAGCACAAGCCTTT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000033717.9 ENSMUST00000112115.2 |
||
| CDS-3UTR GCA 90 bp | TGGCAGGTAAAAGCATCACACACTTTCAGGTTTTATATCTCAAATACTCCTGAGGGTCAGGTCAGATGTTaGTGCAGTCACTGGACAGCC | + |
|
Preference number: 4 (lower is better) Translates to: WQVKASHTFRFYISNTPEGQVRC*CSHWTA Trigger: GGCTGTCCAGTGACTGCAGCAACATCTGACCTGACC...CTCAGGAGTATTTGAGATATAAAACCTGAAAGTGTGTGATGCTTTTACCTGCCA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000033717.9 ENSMUST00000112115.2 |
||
| CDS-3UTR CCA 90 bp | ATCTCTAAGCCTGAGATTCAGGTACTTCTGGGTCTAGTTTCCATTTCAGTTTCTTGTTGCTGCAGTCACTaGACAGCCTTTCCTTTGCCC | + |
|
Preference number: 4 (lower is better) Translates to: ISKPEIQVLLGLVSISVSCCCSH*TAFPLP Trigger: GGGCAAAGGAAAGGCTGTCCAGTGACTGCAGCAACA...AGAAACTGAAATGGAAACTAGACCCAGAAGTACCTGAATCTCAGGCTTAGAGAT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000154638.9 |
||
| CDS-3UTR CCA 90 bp | GGAACTCACTCTGTAGACCAGGCTAGTCTCAAACTCAGAGATCTATGGAATGCTAGTAAATGGCTGATCTaGGGATGGTGTCTGATTAGG | + |
|
Preference number: 4 (lower is better) Translates to: GTHSVDQASLKLRDLWNASKWLI*GWCLIR Trigger: CCTAATCAGACACCATCCCCAGATCAGCCATTTACT...AGCATTCCATAGATCTCTGAGTTTGAGACTAGCCTGGTCTACAGAGTGAGTTCC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000033717.9 ENSMUST00000112115.2 |
||
| 3UTR CAA 72 bp | CATATGCTTTTAATTCCAGCATTGAGGAGGCAGAGATaGGTGGATCTTTGGGAGTTAGAGATCAGCCTGGTC | + |
|
Preference number: 4 (lower is better) Translates to: HMLLIPALRRQR*VDLWELEISLV Trigger: GACCAGGCTGATCTCTAACTCCCAAAGATCCACCAATCTCTGCCTCCTCAATGCTGGAATTAAAAGCATATG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000154638.9 |
||
| CDS-3UTR TCA 90 bp | TTTACATTACACGACTGGTGGCAAGCTCCAAGTAGGAAGAGGGAATGGGATGAGAATTCTTGCTCTTGGTaGATACTCTCTTGCTTTACC | + |
|
Preference number: 4 (lower is better) Translates to: FTLHDWWQAPSRKREWDENSCSW*ILSCFT Trigger: GGTAAAGCAAGAGAGTATTCACCAAGAGCAAGAATT...CTCATCCCATTCCCTCTTCCTACTTGGAGCTTGCCACCAGTCGTGTAATGTAAA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000033717.9 ENSMUST00000112115.2 |
||
| CDS-3UTR CCA 90 bp | ATCTCTAAGCCTGAGATTCAGGTACTTCTGGGTCTAGTTTCCATTTCAGTTTCTGTGCTTTGCTCTCACTaGTCAGGTCAGATGTTGCTG | + |
|
Preference number: 4 (lower is better) Translates to: ISKPEIQVLLGLVSISVSVLCSH*SGQMLL Trigger: CAGCAACATCTGACCTGACCAGTGAGAGCAAAGCAC...AGAAACTGAAATGGAAACTAGACCCAGAAGTACCTGAATCTCAGGCTTAGAGAT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000154638.9 |
||
| CDS-3UTR CCA 90 bp | TGGCAGGTAAAAGCATCACACACTTTCAGGTTTTATATCTCAAATACTCCTGAGTGGCTGATCTGGGGATaGTGTCTGATTAGGTGGTGG | + |
|
Preference number: 4 (lower is better) Translates to: WQVKASHTFRFYISNTPEWLIWG*CLIRWW Trigger: CCACCACCTAATCAGACACCATCCCCAGATCAGCCA...CTCAGGAGTATTTGAGATATAAAACCTGAAAGTGTGTGATGCTTTTACCTGCCA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000033717.9 ENSMUST00000112115.2 |
||
| CDS-3UTR CCA 90 bp | AAAGGCTTGTGCTACTACTGCCCAGCAAAACAACCAGTTTTCAACAGCAAACTCAGTAAATGGCTGATCTaGGGATGGTGTCTGATTAGG | + |
|
Preference number: 4 (lower is better) Translates to: KGLCYYCPAKQPVFNSKLSKWLI*GWCLIR Trigger: CCTAATCAGACACCATCCCCAGATCAGCCATTTACT...GAGTTTGCTGTTGAAAACTGGTTGTTTTGCTGGGCAGTAGTAGCACAAGCCTTT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000033717.9 ENSMUST00000112115.2 |
||
| CDS-3UTR CCA 90 bp | AAAGGCTTGTGCTACTACTGCCCAGCAAAACAACCAGTTTTCAACAGCAAACTCGGTAGACAAAGTAAATaGCTGATCTGGGGATGGTGT | + |
|
Preference number: 4 (lower is better) Translates to: KGLCYYCPAKQPVFNSKLGRQSK*LIWGWC Trigger: ACACCATCCCCAGATCAGCCATTTACTTTGTCTACC...GAGTTTGCTGTTGAAAACTGGTTGTTTTGCTGGGCAGTAGTAGCACAAGCCTTT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000033717.9 ENSMUST00000112115.2 |
||
| CDS-3UTR GCA 90 bp | GTAAAAGCATCACACACTTTCAGGTTTTATATCTCAAATACTCCTGAGGAAACAGGTCAGGTCAGATGTTaGTGCAGTCACTGGACAGCC | + |
|
Preference number: 4 (lower is better) Translates to: VKASHTFRFYISNTPEETGQVRC*CSHWTA Trigger: GGCTGTCCAGTGACTGCAGCAACATCTGACCTGACC...TGTTTCCTCAGGAGTATTTGAGATATAAAACCTGAAAGTGTGTGATGCTTTTAC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000033717.9 ENSMUST00000112115.2 |
||
| CDS-3UTR CCA 90 bp | TGGCAGGTAAAAGCATCACACACTTTCAGGTTTTATATCTCAAATACTCCTGAGGTGCTTTGCTCTCACTaGTCAGGTCAGATGTTGCTG | + |
|
Preference number: 4 (lower is better) Translates to: WQVKASHTFRFYISNTPEVLCSH*SGQMLL Trigger: CAGCAACATCTGACCTGACCAGTGAGAGCAAAGCAC...CTCAGGAGTATTTGAGATATAAAACCTGAAAGTGTGTGATGCTTTTACCTGCCA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000033717.9 ENSMUST00000112115.2 |
||
| 3UTR CAA 72 bp | TTCAGAAAAGACCCATCCAGGAACGAATTCTTGCTCTaGGTGAATACTCTCTTGCTTTACCTCCAAATCGGA | + |
|
Preference number: 4 (lower is better) Translates to: FRKDPSRNEFLL*VNTLLLYLQIG Trigger: TCCGATTTGGAGGTAAAGCAAGAGAGTATTCACCAAGAGCAAGAATTCGTTCCTGGATGGGTCTTTTCTGAA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000154638.9 |
||
| 3UTR CAA 72 bp | TCCTTGCTGTTGTATAAGGTAGCTGCTTGTCAACCATaGTTCAGAAAAGACCCATCCAGGAACGAATTCTTG | + |
|
Preference number: 4 (lower is better) Translates to: SLLLYKVAACQP*FRKDPSRNEFL Trigger: CAAGAATTCGTTCCTGGATGGGTCTTTTCTGAACAATGGTTGACAAGCAGCTACCTTATACAACAGCAAGGA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000154638.9 |
||
| CDS-3UTR GCA 90 bp | GTAAAAGCATCACACACTTTCAGGTTTTATATCTCAAATACTCCTGAGGAAACAAGCAGGCACAGTGTGTaGTTTGCTCTCACTGGTCAG | + |
|
Preference number: 4 (lower is better) Translates to: VKASHTFRFYISNTPEETSRHSV*FALTGQ Trigger: CTGACCAGTGAGAGCAAAGCACACACTGTGCCTGCT...TGTTTCCTCAGGAGTATTTGAGATATAAAACCTGAAAGTGTGTGATGCTTTTAC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000033717.9 ENSMUST00000112115.2 |
||
| CDS-3UTR CCA 90 bp | GTAAAAGCATCACACACTTTCAGGTTTTATATCTCAAATACTCCTGAGGAAACAGGTAGACAAAGTAAATaGCTGATCTGGGGATGGTGT | + |
|
Preference number: 4 (lower is better) Translates to: VKASHTFRFYISNTPEETGRQSK*LIWGWC Trigger: ACACCATCCCCAGATCAGCCATTTACTTTGTCTACC...TGTTTCCTCAGGAGTATTTGAGATATAAAACCTGAAAGTGTGTGATGCTTTTAC 39% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000033717.9 ENSMUST00000112115.2 |
||
| CDS-3UTR TCA 90 bp | GTAAAAGCATCACACACTTTCAGGTTTTATATCTCAAATACTCCTGAGGAAACAAATTCTTGCTCTTGGTaGATACTCTCTTGCTTTACC | + |
|
Preference number: 4 (lower is better) Translates to: VKASHTFRFYISNTPEETNSCSW*ILSCFT Trigger: GGTAAAGCAAGAGAGTATTCACCAAGAGCAAGAATT...TGTTTCCTCAGGAGTATTTGAGATATAAAACCTGAAAGTGTGTGATGCTTTTAC 37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000033717.9 ENSMUST00000112115.2 |
||
| 3UTR CAA 72 bp | TCCCAAAGAAGCAGGAAATATAAATTAGGTTGGGTGTaGGTCTCAGTTAGGAAGCAAATTAATAACAGTAAT | + |
|
Preference number: 4 (lower is better) Translates to: SQRSRKYKLGWV*VSVRKQINNSN Trigger: ATTACTGTTATTAATTTGCTTCCTAACTGAGACCAACACCCAACCTAATTTATATTTCCTGCTTCTTTGGGA 35% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000154638.9 |
||
| CDS CCA 90 bp | AGGCCCGGTCTTGGTGAGCAGGCACAGTGTGTGCTTTGCTCTCACTaGTCAGGTCAGATGTTGCTGCAGTCACTGGACAGCCTTTCCTTT | + |
|
Preference number: 5 (lower is better) Translates to: RPGLGEQAQCVLCSH*SGQMLLQSLDSLSF Trigger: AAAGGAAAGGCTGTCCAGTGACTGCAGCAACATCTGACCTGACCAGTGAGAGCAAAGCACACACTGTGCCTGCTCACCAAGACCGGGCCT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000033717.9 ENSMUST00000112115.2 ENSMUST00000154638.9 |
||
| CDS GCA 90 bp | CATAATCATAGGCCCGGTCTTGGTGAGCAGGCACAGTGTGTGCTTTaGTCTCACTGGTCAGGTCAGATGTTGCTGCAGTCACTGGACAGC | + |
|
Preference number: 5 (lower is better) Translates to: HNHRPGLGEQAQCVL*SHWSGQMLLQSLDS Trigger: GCTGTCCAGTGACTGCAGCAACATCTGACCTGACCAGTGAGAGCAAAGCACACACTGTGCCTGCTCACCAAGACCGGGCCTATGATTATG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000033717.9 ENSMUST00000112115.2 ENSMUST00000154638.9 |
||
| CDS GCA 90 bp | AGCAGGCACAGTGTGTGCTTTGCTCTCACTGGTCAGGTCAGATGTTaGTGCAGTCACTGGACAGCCTTTCCTTTGCCCTTTATGCATCGG | + |
|
Preference number: 5 (lower is better) Translates to: SRHSVCFALTGQVRC*CSHWTAFPLPFMHR Trigger: CCGATGCATAAAGGGCAAAGGAAAGGCTGTCCAGTGACTGCAGCAACATCTGACCTGACCAGTGAGAGCAAAGCACACACTGTGCCTGCT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000033717.9 ENSMUST00000112115.2 ENSMUST00000154638.9 |
||
| CDS TCA 90 bp | CTTTGCCCTTTATGCATCGGGCATCCTGAAGGTGGTGAAGCTGGCTaGCCATCTGAAGCATTCGAGGCGTTTACTGCAGTAGCAGGAGAA | + |
|
Preference number: 5 (lower is better) Translates to: LCPLCIGHPEGGEAG*PSEAFEAFTAVAGE Trigger: TTCTCCTGCTACTGCAGTAAACGCCTCGAATGCTTCAGATGGTCAGCCAGCTTCACCACCTTCAGGATGCCCGATGCATAAAGGGCAAAG 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000033717.9 ENSMUST00000112115.2 ENSMUST00000154638.9 |
||
| CDS-3UTR CAA 90 bp | TTTACATTACACGACTGGTGGCAAGCTCCAAGTAGGAAGAGGGAATGGGATGAGATCATAGGCCCGGTCTaGGTGAGCAGGCACAGTGTG | + |
|
Preference number: 5 (lower is better) Translates to: FTLHDWWQAPSRKREWDEIIGPV*VSRHSV Trigger: CACACTGTGCCTGCTCACCAAGACCGGGCCTATGAT...CTCATCCCATTCCCTCTTCCTACTTGGAGCTTGCCACCAGTCGTGTAATGTAAA 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000033717.9 ENSMUST00000112115.2 |
||
| CDS TCA 90 bp | TGGCTGATCTGGGGATGGTGTCTGATTAGGTGGTGGCATCAGGTTTaGAGGATCGAGGCTCTCCTTATCCTTAGCTCTAGCACCAGTAAC | + |
|
Preference number: 5 (lower is better) Translates to: WLIWGWCLIRWWHQV*RIEALLILSSSTSN Trigger: GTTACTGGTGCTAGAGCTAAGGATAAGGAGAGCCTCGATCCTTCAAACCTGATGCCACCACCTAATCAGACACCATCCCCAGATCAGCCA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000033717.9 ENSMUST00000112115.2 |
||
| CDS TCA 90 bp | CCAGCGCCACCAAGCAACCTTCATTCTGTCCCATACTGCAGAGAATaGATCAAAGGCAGGACGCACATCCAGGATAGTGAACTGGTACTC | + |
|
Preference number: 5 (lower is better) Translates to: PAPPSNLHSVPYCRE*IKGRTHIQDSELVL Trigger: GAGTACCAGTTCACTATCCTGGATGTGCGTCCTGCCTTTGATTCATTCTCTGCAGTATGGGACAGAATGAAGGTTGCTTGGTGGCGCTGG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000033717.9 ENSMUST00000112115.2 |
||
| CDS-3UTR CAA 90 bp | TTTACATTACACGACTGGTGGCAAGCTCCAAGTAGGAAGAGGGAATGGGATGAGGGCACAGTGTGTGCTTaGCTCTCACTGGTCAGGTCA | + |
|
Preference number: 5 (lower is better) Translates to: FTLHDWWQAPSRKREWDEGTVCA*LSLVRS Trigger: TGACCTGACCAGTGAGAGCAAAGCACACACTGTGCC...CTCATCCCATTCCCTCTTCCTACTTGGAGCTTGCCACCAGTCGTGTAATGTAAA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000033717.9 ENSMUST00000112115.2 |
||
| CDS-3UTR CAA 90 bp | TTTACATTACACGACTGGTGGCAAGCTCCAAGTAGGAAGAGGGAATGGGATGAGGTGGTGGCATCAGGTTaGAAGGATCGAGGCTCTCCT | + |
|
Preference number: 5 (lower is better) Translates to: FTLHDWWQAPSRKREWDEVVASG*KDRGSP Trigger: AGGAGAGCCTCGATCCTTCAAACCTGATGCCACCAC...CTCATCCCATTCCCTCTTCCTACTTGGAGCTTGCCACCAGTCGTGTAATGTAAA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000033717.9 ENSMUST00000112115.2 |
||
| CDS-3UTR CAA 90 bp | TTCAGACTGAGTTCGGGGTCAGACCCACTGTTTATTGTGCCTGTCCTCATTTCACCACTTCCACCAGGTTaGAAGGATCGAGGCTCTCCT | + |
|
Preference number: 5 (lower is better) Translates to: FRLSSGSDPLFIVPVLISPLPPG*KDRGSP Trigger: AGGAGAGCCTCGATCCTTCAAACCTGGTGGAAGTGG...TGAAATGAGGACAGGCACAATAAACAGTGGGTCTGACCCCGAACTCAGTCTGAA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000154638.9 |
||
| CDS-3UTR CAA 90 bp | TTCAGACTGAGTTCGGGGTCAGACCCACTGTTTATTGTGCCTGTCCTCATTTCATGGACAGCCTTTCCTTaGCCCTTTATGCATCGGGCA | + |
|
Preference number: 5 (lower is better) Translates to: FRLSSGSDPLFIVPVLISWTAFP*PFMHRA Trigger: TGCCCGATGCATAAAGGGCAAAGGAAAGGCTGTCCA...TGAAATGAGGACAGGCACAATAAACAGTGGGTCTGACCCCGAACTCAGTCTGAA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000154638.9 |
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| CDS-3UTR CAA 90 bp | GGAACTCACTCTGTAGACCAGGCTAGTCTCAAACTCAGAGATCTATGGAATGCTGGCACAGTGTGTGCTTaGCTCTCACTGGTCAGGTCA | + |
|
Preference number: 5 (lower is better) Translates to: GTHSVDQASLKLRDLWNAGTVCA*LSLVRS Trigger: TGACCTGACCAGTGAGAGCAAAGCACACACTGTGCC...AGCATTCCATAGATCTCTGAGTTTGAGACTAGCCTGGTCTACAGAGTGAGTTCC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000033717.9 ENSMUST00000112115.2 |
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| CDS-3UTR CAA 90 bp | GGAACTCACTCTGTAGACCAGGCTAGTCTCAAACTCAGAGATCTATGGAATGCTTGGACAGCCTTTCCTTaGCCCTTTATGCATCGGGCA | + |
|
Preference number: 5 (lower is better) Translates to: GTHSVDQASLKLRDLWNAWTAFP*PFMHRA Trigger: TGCCCGATGCATAAAGGGCAAAGGAAAGGCTGTCCA...AGCATTCCATAGATCTCTGAGTTTGAGACTAGCCTGGTCTACAGAGTGAGTTCC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000033717.9 ENSMUST00000112115.2 |
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| CDS-3UTR CAA 90 bp | TTTACATTACACGACTGGTGGCAAGCTCCAAGTAGGAAGAGGGAATGGGATGAGGTGAACTGGTACTCCTaGTTCACCTCACCACCATCA | + |
|
Preference number: 5 (lower is better) Translates to: FTLHDWWQAPSRKREWDEVNWYS*FTSPPS Trigger: TGATGGTGGTGAGGTGAACAAGGAGTACCAGTTCAC...CTCATCCCATTCCCTCTTCCTACTTGGAGCTTGCCACCAGTCGTGTAATGTAAA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000033717.9 ENSMUST00000112115.2 |
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| CDS-3UTR CAA 90 bp | ATCTCTAAGCCTGAGATTCAGGTACTTCTGGGTCTAGTTTCCATTTCAGTTTCTATCATAGGCCCGGTCTaGGTGAGCAGGCACAGTGTG | + |
|
Preference number: 5 (lower is better) Translates to: ISKPEIQVLLGLVSISVSIIGPV*VSRHSV Trigger: CACACTGTGCCTGCTCACCAAGACCGGGCCTATGAT...AGAAACTGAAATGGAAACTAGACCCAGAAGTACCTGAATCTCAGGCTTAGAGAT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000154638.9 |
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| CDS-3UTR CAA 90 bp | TTTACATTACACGACTGGTGGCAAGCTCCAAGTAGGAAGAGGGAATGGGATGAGAGTCAGCTCTTGGAATaGATGACTCCTCTCTTGAGG | + |
|
Preference number: 5 (lower is better) Translates to: FTLHDWWQAPSRKREWDESQLLE*MTPLLR Trigger: CCTCAAGAGAGGAGTCATCAATTCCAAGAGCTGACT...CTCATCCCATTCCCTCTTCCTACTTGGAGCTTGCCACCAGTCGTGTAATGTAAA 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000033717.9 ENSMUST00000112115.2 |
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| CDS TCA 90 bp | AAAAGGCAATTCATACCCCATCCAGGAACGAATTCTTGCTCTTGGTaGATACTCTCTTGCTTTACCTCCAAATCGGACCAACGATGGGCC | + |
|
Preference number: 5 (lower is better) Translates to: KRQFIPHPGTNSCSW*ILSCFTSKSDQRWA Trigger: GGCCCATCGTTGGTCCGATTTGGAGGTAAAGCAAGAGAGTATTCACCAAGAGCAAGAATTCGTTCCTGGATGGGGTATGAATTGCCTTTT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000033717.9 ENSMUST00000112115.2 |
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| CDS-3UTR CAA 90 bp | TGGCAGGTAAAAGCATCACACACTTTCAGGTTTTATATCTCAAATACTCCTGAGGTGGTGGCATCAGGTTaGAAGGATCGAGGCTCTCCT | + |
|
Preference number: 5 (lower is better) Translates to: WQVKASHTFRFYISNTPEVVASG*KDRGSP Trigger: AGGAGAGCCTCGATCCTTCAAACCTGATGCCACCAC...CTCAGGAGTATTTGAGATATAAAACCTGAAAGTGTGTGATGCTTTTACCTGCCA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000033717.9 ENSMUST00000112115.2 |
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| CDS-3UTR CAA 90 bp | AAAGGCTTGTGCTACTACTGCCCAGCAAAACAACCAGTTTTCAACAGCAAACTCAGTCAGCTCTTGGAATaGATGACTCCTCTCTTGAGG | + |
|
Preference number: 5 (lower is better) Translates to: KGLCYYCPAKQPVFNSKLSQLLE*MTPLLR Trigger: CCTCAAGAGAGGAGTCATCAATTCCAAGAGCTGACT...GAGTTTGCTGTTGAAAACTGGTTGTTTTGCTGGGCAGTAGTAGCACAAGCCTTT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000033717.9 ENSMUST00000112115.2 |
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| CDS-3UTR CAA 90 bp | TGGCAGGTAAAAGCATCACACACTTTCAGGTTTTATATCTCAAATACTCCTGAGTGGACAGCCTTTCCTTaGCCCTTTATGCATCGGGCA | + |
|
Preference number: 5 (lower is better) Translates to: WQVKASHTFRFYISNTPEWTAFP*PFMHRA Trigger: TGCCCGATGCATAAAGGGCAAAGGAAAGGCTGTCCA...CTCAGGAGTATTTGAGATATAAAACCTGAAAGTGTGTGATGCTTTTACCTGCCA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000033717.9 ENSMUST00000112115.2 |
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| CDS-3UTR CAA 90 bp | GTAAAAGCATCACACACTTTCAGGTTTTATATCTCAAATACTCCTGAGGAAACAATCATAGGCCCGGTCTaGGTGAGCAGGCACAGTGTG | + |
|
Preference number: 5 (lower is better) Translates to: VKASHTFRFYISNTPEETIIGPV*VSRHSV Trigger: CACACTGTGCCTGCTCACCAAGACCGGGCCTATGAT...TGTTTCCTCAGGAGTATTTGAGATATAAAACCTGAAAGTGTGTGATGCTTTTAC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000033717.9 ENSMUST00000112115.2 |
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| CDS-3UTR CAA 90 bp | GGAACTCACTCTGTAGACCAGGCTAGTCTCAAACTCAGAGATCTATGGAATGCTAATCTCCTTCCACGCTaGCTCATTATTCTGATTGTG | + |
|
Preference number: 5 (lower is better) Translates to: GTHSVDQASLKLRDLWNANLLPR*LIILIV Trigger: CACAATCAGAATAATGAGCAAGCGTGGAAGGAGATT...AGCATTCCATAGATCTCTGAGTTTGAGACTAGCCTGGTCTACAGAGTGAGTTCC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000033717.9 ENSMUST00000112115.2 |
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| CDS-3UTR CAA 90 bp | GGAACTCACTCTGTAGACCAGGCTAGTCTCAAACTCAGAGATCTATGGAATGCTTTGGTGAATACTCTCTaGCTTTACCTCCAAATCGGA | + |
|
Preference number: 5 (lower is better) Translates to: GTHSVDQASLKLRDLWNALVNTL*LYLQIG Trigger: TCCGATTTGGAGGTAAAGCAAGAGAGTATTCACCAA...AGCATTCCATAGATCTCTGAGTTTGAGACTAGCCTGGTCTACAGAGTGAGTTCC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000033717.9 ENSMUST00000112115.2 |
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| CDS-3UTR CAA 90 bp | TTTACATTACACGACTGGTGGCAAGCTCCAAGTAGGAAGAGGGAATGGGATGAGAACGAATTCTTGCTCTaGGTGAATACTCTCTTGCTT | + |
|
Preference number: 5 (lower is better) Translates to: FTLHDWWQAPSRKREWDENEFLL*VNTLLL Trigger: AAGCAAGAGAGTATTCACCAAGAGCAAGAATTCGTT...CTCATCCCATTCCCTCTTCCTACTTGGAGCTTGCCACCAGTCGTGTAATGTAAA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000033717.9 ENSMUST00000112115.2 |
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| CDS CCA 90 bp | ATCACATATCTAACTTCTGTGCCACAACGATTGATGATCCAGTCATaGCGGTCAAAAGGCAATTCATACCCCATCCAGGAACGAATTCTT | + |
|
Preference number: 5 (lower is better) Translates to: ITYLTSVPQRLMIQS*RSKGNSYPIQERIL Trigger: AAGAATTCGTTCCTGGATGGGGTATGAATTGCCTTTTGACCGCCATGACTGGATCATCAATCGTTGTGGCACAGAAGTTAGATATGTGAT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000033717.9 ENSMUST00000112115.2 |
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| CDS-3UTR CAA 90 bp | TGGCAGGTAAAAGCATCACACACTTTCAGGTTTTATATCTCAAATACTCCTGAGTCTCAGAGTCAGCTCTaGGAATTGATGACTCCTCTC | + |
|
Preference number: 5 (lower is better) Translates to: WQVKASHTFRFYISNTPESQSQL*ELMTPL Trigger: GAGAGGAGTCATCAATTCCAAGAGCTGACTCTGAGA...CTCAGGAGTATTTGAGATATAAAACCTGAAAGTGTGTGATGCTTTTACCTGCCA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000033717.9 ENSMUST00000112115.2 |
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| CDS-3UTR CAA 90 bp | GTAAAAGCATCACACACTTTCAGGTTTTATATCTCAAATACTCCTGAGGAAACAGTGAACTGGTACTCCTaGTTCACCTCACCACCATCA | + |
|
Preference number: 5 (lower is better) Translates to: VKASHTFRFYISNTPEETVNWYS*FTSPPS Trigger: TGATGGTGGTGAGGTGAACAAGGAGTACCAGTTCAC...TGTTTCCTCAGGAGTATTTGAGATATAAAACCTGAAAGTGTGTGATGCTTTTAC 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000033717.9 ENSMUST00000112115.2 |
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| CDS-3UTR CAA 90 bp | GTAAAAGCATCACACACTTTCAGGTTTTATATCTCAAATACTCCTGAGGAAACATCTCAGAGTCAGCTCTaGGAATTGATGACTCCTCTC | + |
|
Preference number: 5 (lower is better) Translates to: VKASHTFRFYISNTPEETSQSQL*ELMTPL Trigger: GAGAGGAGTCATCAATTCCAAGAGCTGACTCTGAGA...TGTTTCCTCAGGAGTATTTGAGATATAAAACCTGAAAGTGTGTGATGCTTTTAC 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000033717.9 ENSMUST00000112115.2 |
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| CDS-3UTR CAA 90 bp | GTAAAAGCATCACACACTTTCAGGTTTTATATCTCAAATACTCCTGAGGAAACATTGGTGAATACTCTCTaGCTTTACCTCCAAATCGGA | + |
|
Preference number: 5 (lower is better) Translates to: VKASHTFRFYISNTPEETLVNTL*LYLQIG Trigger: TCCGATTTGGAGGTAAAGCAAGAGAGTATTCACCAA...TGTTTCCTCAGGAGTATTTGAGATATAAAACCTGAAAGTGTGTGATGCTTTTAC 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000033717.9 ENSMUST00000112115.2 |
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| CDS-3UTR CAA 90 bp | GTAAAAGCATCACACACTTTCAGGTTTTATATCTCAAATACTCCTGAGGAAACAAACGAATTCTTGCTCTaGGTGAATACTCTCTTGCTT | + |
|
Preference number: 5 (lower is better) Translates to: VKASHTFRFYISNTPEETNEFLL*VNTLLL Trigger: AAGCAAGAGAGTATTCACCAAGAGCAAGAATTCGTT...TGTTTCCTCAGGAGTATTTGAGATATAAAACCTGAAAGTGTGTGATGCTTTTAC 37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000033717.9 ENSMUST00000112115.2 |
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| CDS GCA 72 bp | AGGCCCGGTCTTGGTGAGCAGGCACAGTGTGTGCTTTaGTCTCACTGGTCAGGTCAGATGTTGCTGCAGTCA | + |
|
Preference number: 6 (lower is better) Translates to: RPGLGEQAQCVL*SHWSGQMLLQS Trigger: TGACTGCAGCAACATCTGACCTGACCAGTGAGAGCAAAGCACACACTGTGCCTGCTCACCAAGACCGGGCCT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000033717.9 ENSMUST00000112115.2 ENSMUST00000154638.9 |
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| CDS CCA 72 bp | CTTGGTGAGCAGGCACAGTGTGTGCTTTGCTCTCACTaGTCAGGTCAGATGTTGCTGCAGTCACTGGACAGC | + |
|
Preference number: 6 (lower is better) Translates to: LGEQAQCVLCSH*SGQMLLQSLDS Trigger: GCTGTCCAGTGACTGCAGCAACATCTGACCTGACCAGTGAGAGCAAAGCACACACTGTGCCTGCTCACCAAG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000033717.9 ENSMUST00000112115.2 ENSMUST00000154638.9 |
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| CDS CAA 90 bp | GAGCAGGCACAGTGTGTGCTTTGCTCTCACTGGTCAGGTCAGATGTaGCTGCAGTCACTGGACAGCCTTTCCTTTGCCCTTTATGCATCG | + |
|
Preference number: 6 (lower is better) Translates to: EQAQCVLCSHWSGQM*LQSLDSLSFALYAS Trigger: CGATGCATAAAGGGCAAAGGAAAGGCTGTCCAGTGACTGCAGCAACATCTGACCTGACCAGTGAGAGCAAAGCACACACTGTGCCTGCTC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000033717.9 ENSMUST00000112115.2 ENSMUST00000154638.9 |
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| CDS CAA 90 bp | TCTAGCACCAGTAACAGGGCATTCCACATAATCATAGGCCCGGTCTaGGTGAGCAGGCACAGTGTGTGCTTTGCTCTCACTGGTCAGGTC | + |
|
Preference number: 6 (lower is better) Translates to: SSTSNRAFHIIIGPV*VSRHSVCFALTGQV Trigger: GACCTGACCAGTGAGAGCAAAGCACACACTGTGCCTGCTCACCAAGACCGGGCCTATGATTATGTGGAATGCCCTGTTACTGGTGCTAGA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000033717.9 ENSMUST00000112115.2 ENSMUST00000154638.9 |
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| CDS CAA 72 bp | CAGTGTGTGCTTTGCTCTCACTGGTCAGGTCAGATGTaGCTGCAGTCACTGGACAGCCTTTCCTTTGCCCTT | + |
|
Preference number: 6 (lower is better) Translates to: QCVLCSHWSGQM*LQSLDSLSFAL Trigger: AAGGGCAAAGGAAAGGCTGTCCAGTGACTGCAGCAACATCTGACCTGACCAGTGAGAGCAAAGCACACACTG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000033717.9 ENSMUST00000112115.2 ENSMUST00000154638.9 |
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| CDS TCA 72 bp | TTATGCATCGGGCATCCTGAAGGTGGTGAAGCTGGCTaGCCATCTGAAGCATTCGAGGCGTTTACTGCAGTA | + |
|
Preference number: 6 (lower is better) Translates to: LCIGHPEGGEAG*PSEAFEAFTAV Trigger: TACTGCAGTAAACGCCTCGAATGCTTCAGATGGTCAGCCAGCTTCACCACCTTCAGGATGCCCGATGCATAA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000033717.9 ENSMUST00000112115.2 ENSMUST00000154638.9 |
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| CDS TCA 72 bp | TGGGGATGGTGTCTGATTAGGTGGTGGCATCAGGTTTaGAGGATCGAGGCTCTCCTTATCCTTAGCTCTAGC | + |
|
Preference number: 6 (lower is better) Translates to: WGWCLIRWWHQV*RIEALLILSSS Trigger: GCTAGAGCTAAGGATAAGGAGAGCCTCGATCCTTCAAACCTGATGCCACCACCTAATCAGACACCATCCCCA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000033717.9 ENSMUST00000112115.2 |
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| CDS GCA 72 bp | TCAGATGTTGCTGCAGTCACTGGACAGCCTTTCCTTTaGCCTTTATGCATCGGGCATCCTGAAGGTGGTGAA | + |
|
Preference number: 6 (lower is better) Translates to: SDVAAVTGQPFL*PLCIGHPEGGE Trigger: TTCACCACCTTCAGGATGCCCGATGCATAAAGGGCAAAGGAAAGGCTGTCCAGTGACTGCAGCAACATCTGA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000033717.9 ENSMUST00000112115.2 ENSMUST00000154638.9 |
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| CDS GCA 72 bp | GTGTGCTTTGCTCTCACTGGTCAGGTCAGATGTTGCTaGAGTCACTGGACAGCCTTTCCTTTGCCCTTTATG | + |
|
Preference number: 6 (lower is better) Translates to: VCFALTGQVRCC*SHWTAFPLPFM Trigger: CATAAAGGGCAAAGGAAAGGCTGTCCAGTGACTGCAGCAACATCTGACCTGACCAGTGAGAGCAAAGCACAC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000033717.9 ENSMUST00000112115.2 ENSMUST00000154638.9 |
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| CDS CAA 72 bp | AGTAACAGGGCATTCCACATAATCATAGGCCCGGTCTaGGTGAGCAGGCACAGTGTGTGCTTTGCTCTCACT | + |
|
Preference number: 6 (lower is better) Translates to: SNRAFHIIIGPV*VSRHSVCFALT Trigger: AGTGAGAGCAAAGCACACACTGTGCCTGCTCACCAAGACCGGGCCTATGATTATGTGGAATGCCCTGTTACT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000033717.9 ENSMUST00000112115.2 ENSMUST00000154638.9 |
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| CDS CCA 72 bp | CTAACTTCTGTGCCACAACGATTGATGATCCAGTCATaGCGGTCAAAAGGCAATTCATACCCCATCCAGGAA | + |
|
Preference number: 6 (lower is better) Translates to: LTSVPQRLMIQS*RSKGNSYPIQE Trigger: TTCCTGGATGGGGTATGAATTGCCTTTTGACCGCCATGACTGGATCATCAATCGTTGTGGCACAGAAGTTAG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000033717.9 ENSMUST00000112115.2 |
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| CDS CAA 90 bp | GGTCAAAAGGCAATTCATACCCCATCCAGGAACGAATTCTTGCTCTaGGTGAATACTCTCTTGCTTTACCTCCAAATCGGACCAACGATG | + |
|
Preference number: 6 (lower is better) Translates to: GQKAIHTPSRNEFLL*VNTLLLYLQIGPTM Trigger: CATCGTTGGTCCGATTTGGAGGTAAAGCAAGAGAGTATTCACCAAGAGCAAGAATTCGTTCCTGGATGGGGTATGAATTGCCTTTTGACC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000033717.9 ENSMUST00000112115.2 |
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| CDS CAA 72 bp | GCAATTCATACCCCATCCAGGAACGAATTCTTGCTCTaGGTGAATACTCTCTTGCTTTACCTCCAAATCGGA | + |
|
Preference number: 6 (lower is better) Translates to: AIHTPSRNEFLL*VNTLLLYLQIG Trigger: TCCGATTTGGAGGTAAAGCAAGAGAGTATTCACCAAGAGCAAGAATTCGTTCCTGGATGGGGTATGAATTGC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000033717.9 ENSMUST00000112115.2 |
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