Pregenerated sensors for HCAR2 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000045502

Ensembl transcript IDs: ENSMUST00000057145.7

Found 24 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type	Sensor	Details
3UTR TCA 90 bp	GGTATACTGGTCCCACCGAACACAAGTGACCAACTGGCTTATCAGTaGCATCTGGGTAGAGATCCCCTCCAGTTTCGTGGATCTCCTTGT	+
Preference number: 1 (lower is better) Translates to: GILVPPNTSDQLAYQ*HLGRDPLQFRGSPC Trigger: ACAAGGAGATCCACGAAACTGGAGGGGATCTCTACCCAGATGTCACTGATAAGCCAGTTGGTCACTTGTGTTCGGTGGGACCAGTATACC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000057145.7
3UTR GCA 90 bp	TCTGTTCCTCTGAGATTTTCTATGGCTGCACCTCGCAACCAAAACTaGTCACTGCACCACGCCGTTTCTCTAAATTCGATTCTCCGAATC	+
Preference number: 1 (lower is better) Translates to: SVPLRFSMAAPRNQN*SLHHAVSLNSILRI Trigger: GATTCGGAGAATCGAATTTAGAGAAACGGCGTGGTGCAGTGAGCAGTTTTGGTTGCGAGGTGCAGCCATAGAAAATCTCAGAGGAACAGA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000057145.7
3UTR-3UTR TCA 90 bp	CAGAGGAGGGAAGCCACTGTTTCCCCAAAGCCTTTTAAAGCTCAGCTGAATTTGCAACTGGCTTATCAGTaGCATCTGGGTAGAGATCCC	+
Preference number: 2 (lower is better) Translates to: QRREATVSPKPFKAQLNLQLAYQ*HLGRDP Trigger: GGGATCTCTACCCAGATGTCACTGATAAGCCAGTTG...CAAATTCAGCTGAGCTTTAAAAGGCTTTGGGGAAACAGTGGCTTCCCTCCTCTG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000057145.7
3UTR-3UTR TCA 90 bp	GGGACTCAAACTCTGCAGGACTCTGTCTTCTTCAGTCCTGTAAGCTTGGAAGGCAGCGTAAGCCAAATCTaGAGATGTTACCCTGTTCAA	+
Preference number: 2 (lower is better) Translates to: GTQTLQDSVFFSPVSLEGSVSQI*RCYPVQ Trigger: TTGAACAGGGTAACATCTTCAGATTTGGCTTACGCT...GCCTTCCAAGCTTACAGGACTGAAGAAGACAGAGTCCTGCAGAGTTTGAGTCCC 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000057145.7
3UTR TCA 72 bp	CTAGGACGAAGAGCCATCCGTGACTTTGAGCAGAACTaGGGTGTGTCTGGGTGCATCTGGGACTCAAACTCT	+
Preference number: 3 (lower is better) Translates to: LGRRAIRDFEQN*GVSGCIWDSNS Trigger: AGAGTTTGAGTCCCAGATGCACCCAGACACACCTCAGTTCTGCTCAAAGTCACGGATGGCTCTTCGTCCTAG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000057145.7
3UTR TCA 72 bp	GTCCCACCGAACACAAGTGACCAACTGGCTTATCAGTaGCATCTGGGTAGAGATCCCCTCCAGTTTCGTGGA	+
Preference number: 3 (lower is better) Translates to: VPPNTSDQLAYQ*HLGRDPLQFRG Trigger: TCCACGAAACTGGAGGGGATCTCTACCCAGATGTCACTGATAAGCCAGTTGGTCACTTGTGTTCGGTGGGAC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000057145.7
3UTR CCA 72 bp	AAGGTATACTGGTCCCACCGAACACAAGTGACCAACTaGCTTATCAGTGACATCTGGGTAGAGATCCCCTCC	+
Preference number: 3 (lower is better) Translates to: KVYWSHRTQVTN*LISDIWVEIPS Trigger: GGAGGGGATCTCTACCCAGATGTCACTGATAAGCCAGTTGGTCACTTGTGTTCGGTGGGACCAGTATACCTT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000057145.7
3UTR TCA 72 bp	CTCCTCCCCTCTTTAGCATTTCTGCTAAAGTCTGGCTaGAAGGTATACTGGTCCCACCGAACACAAGTGACC	+
Preference number: 3 (lower is better) Translates to: LLPSLAFLLKSG*KVYWSHRTQVT Trigger: GGTCACTTGTGTTCGGTGGGACCAGTATACCTTTCAGCCAGACTTTAGCAGAAATGCTAAAGAGGGGAGGAG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000057145.7
3UTR TCA 72 bp	AGCTCAGCTGAATTTGTTATTGTTTCTCTCCAGCACTaGGTTCAGTCCCTCCTGGGGCTAACCCCCTCTTAC	+
Preference number: 3 (lower is better) Translates to: SSAEFVIVSLQH*VQSLLGLTPSY Trigger: GTAAGAGGGGGTTAGCCCCAGGAGGGACTGAACTCAGTGCTGGAGAGAAACAATAACAAATTCAGCTGAGCT 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000057145.7
3UTR-3UTR CAA 90 bp	CCCCCAACCATGGACACAGTTGAATTCCTTTTACTAAGAAACGCAGACAGAGGAGAGCCATCCGTGACTTaGAGCAGAACTGAGGTGTGT	+
Preference number: 3 (lower is better) Translates to: PPTMDTVEFLLLRNADRGEPSVT*SRTEVC Trigger: ACACACCTCAGTTCTGCTCAAAGTCACGGATGGCTC...TCCTCTGTCTGCGTTTCTTAGTAAAAGGAATTCAACTGTGTCCATGGTTGGGGG 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000057145.7
3UTR CCA 72 bp	GCATCTCCTCCCCTCTTTAGCATTTCTGCTAAAGTCTaGCTGAAAGGTATACTGGTCCCACCGAACACAAGT	+
Preference number: 3 (lower is better) Translates to: ASPPLFSISAKV*LKGILVPPNTS Trigger: ACTTGTGTTCGGTGGGACCAGTATACCTTTCAGCCAGACTTTAGCAGAAATGCTAAAGAGGGGAGGAGATGC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000057145.7
3UTR TCA 72 bp	GACTCTGTCTTCTTCAGTCCTGTAAGCTTGGAAGGCTaGGAAGTTTCCACTGTCTGGAAACTCTGCTTTCTG	+
Preference number: 3 (lower is better) Translates to: DSVFFSPVSLEG*EVSTVWKLCFL Trigger: CAGAAAGCAGAGTTTCCAGACAGTGGAAACTTCTCAGCCTTCCAAGCTTACAGGACTGAAGAAGACAGAGTC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000057145.7
3UTR GCA 72 bp	CTGAGATTTTCTATGGCTGCACCTCGCAACCAAAACTaGTCACTGCACCACGCCGTTTCTCTAAATTCGATT	+
Preference number: 3 (lower is better) Translates to: LRFSMAAPRNQN*SLHHAVSLNSI Trigger: AATCGAATTTAGAGAAACGGCGTGGTGCAGTGAGCAGTTTTGGTTGCGAGGTGCAGCCATAGAAAATCTCAG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000057145.7
CDS-3UTR CCA 90 bp	TCTCCTCCCCTCTTTAGCATTTCTGCTAAAGTCTGGCTGAAAGGTATACTGGTCGGCTGCCTGGCTCACTaGGGTCAGCCATTAGCGCCC	+
Preference number: 4 (lower is better) Translates to: SPPLFSISAKVWLKGILVGCLAH*GQPLAP Trigger: GGGCGCTAATGGCTGACCCCAGTGAGCCAGGCAGCC...GACCAGTATACCTTTCAGCCAGACTTTAGCAGAAATGCTAAAGAGGGGAGGAGA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000057145.7
CDS-3UTR TCA 90 bp	TGTTCAACGAACGGCCAAATCGCCTCTCCAGAGAGCACAGGCCTGAGCGGCAATAGTTGTAACAGATGCTaGAGCTGCTACACAGATATG	+
Preference number: 4 (lower is better) Translates to: CSTNGQIASPESTGLSGNSCNRC*SCYTDM Trigger: CATATCTGTGTAGCAGCTTCAGCATCTGTTACAACT...ATTGCCGCTCAGGCCTGTGCTCTCTGGAGAGGCGATTTGGCCGTTCGTTGAACA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000057145.7
CDS-3UTR CCA 90 bp	CCCCCAACCATGGACACAGTTGAATTCCTTTTACTAAGAAACGCAGACAGAGGATGGCCGCCGTCCGGTTaGAGATCTTGTTCAAGAAGT	+
Preference number: 4 (lower is better) Translates to: PPTMDTVEFLLLRNADRGWPPSG*RSCSRS Trigger: ACTTCTTGAACAAGATCTCCAACCGGACGGCGGCCA...TCCTCTGTCTGCGTTTCTTAGTAAAAGGAATTCAACTGTGTCCATGGTTGGGGG 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000057145.7
CDS-3UTR CCA 90 bp	CCACGCCGTTTCTCTAAATTCGATTCTCCGAATCTAGAAGTTCCAAGAAAGCGTTGGGGAAAGATGGGCTaGAGAAATAGTAGACCACAG	+
Preference number: 4 (lower is better) Translates to: PRRFSKFDSPNLEVPRKRWGKMG*RNSRPQ Trigger: CTGTGGTCTACTATTTCTCCAGCCCATCTTTCCCCA...ACGCTTTCTTGGAACTTCTAGATTCGGAGAATCGAATTTAGAGAAACGGCGTGG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000057145.7
CDS-3UTR CCA 90 bp	CCACGCCGTTTCTCTAAATTCGATTCTCCGAATCTAGAAGTTCCAAGAAAGCGTGAAGTTGGGGAAAGATaGGCTGGAGAAATAGTAGAC	+
Preference number: 4 (lower is better) Translates to: PRRFSKFDSPNLEVPRKREVGER*AGEIVD Trigger: GTCTACTATTTCTCCAGCCCATCTTTCCCCAACTTC...ACGCTTTCTTGGAACTTCTAGATTCGGAGAATCGAATTTAGAGAAACGGCGTGG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000057145.7
3UTR CAA 72 bp	TACCACCTTTGGAGACTTGGAGAACAATCAAATCTTTaGCATCTCCTCCCCTCTTTAGCATTTCTGCTAAAG	+
Preference number: 4 (lower is better) Translates to: YHLWRLGEQSNL*HLLPSLAFLLK Trigger: CTTTAGCAGAAATGCTAAAGAGGGGAGGAGATGCAAAAGATTTGATTGTTCTCCAAGTCTCCAAAGGTGGTA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000057145.7
CDS-3UTR CCA 90 bp	GCACCACGCCGTTTCTCTAAATTCGATTCTCCGAATCTAGAAGTTCCAAGAAAGATGCCTCGCCATTTTTaGTCATCATGTTTGTATAGA	+
Preference number: 4 (lower is better) Translates to: APRRFSKFDSPNLEVPRKMPRHF*SSCLYR Trigger: TCTATACAAACATGATGACCAAAAATGGCGAGGCAT...CTTTCTTGGAACTTCTAGATTCGGAGAATCGAATTTAGAGAAACGGCGTGGTGC 41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000057145.7
CDS-3UTR GCA 90 bp	CCACGCCGTTTCTCTAAATTCGATTCTCCGAATCTAGAAGTTCCAAGAAAGCGTAGTAGATGTCACAGTTaGGTACGTTATATTTGTAGA	+
Preference number: 4 (lower is better) Translates to: PRRFSKFDSPNLEVPRKRSRCHS*VRYICR Trigger: TCTACAAATATAACGTACGCAACTGTGACATCTACT...ACGCTTTCTTGGAACTTCTAGATTCGGAGAATCGAATTTAGAGAAACGGCGTGG 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000057145.7
CDS-3UTR CAA 90 bp	GAACGGCCAAATCGCCTCTCCAGAGAGCACAGGCCTGAGCGGCAATCTCCCTTCATGGCCCTCTTGATCTaGGCATGTCTGTCCATCTGT	+
Preference number: 5 (lower is better) Translates to: ERPNRLSREHRPERQSPFMALLI*ACLSIC Trigger: ACAGATGGACAGACATGCCAAGATCAAGAGGGCCAT...GAAGGGAGATTGCCGCTCAGGCCTGTGCTCTCTGGAGAGGCGATTTGGCCGTTC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000057145.7
CDS-3UTR CAA 90 bp	GGGTGCATCTGGGACTCAAACTCTGCAGGACTCTGTCTTCTTCAGTCCTGTAAGTTTTGGTCATCATGTTaGTATAGAGGAGGTGGACAG	+
Preference number: 5 (lower is better) Translates to: GCIWDSNSAGLCLLQSCKFWSSC*YRGGGQ Trigger: CTGTCCACCTCCTCTATACAAACATGATGACCAAAA...CTTACAGGACTGAAGAAGACAGAGTCCTGCAGAGTTTGAGTCCCAGATGCACCC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000057145.7
CDS-3UTR CAA 90 bp	TCTAAATTCGATTCTCCGAATCTAGAAGTTCCAAGAAAGCGTAAGCCAAATCTGATGGCCGCCGTCCGGTaGGAGATCTTGTTCAAGAAG	+
Preference number: 5 (lower is better) Translates to: SKFDSPNLEVPRKRKPNLMAAVR*EILFKK Trigger: CTTCTTGAACAAGATCTCCAACCGGACGGCGGCCAT...CAGATTTGGCTTACGCTTTCTTGGAACTTCTAGATTCGGAGAATCGAATTTAGA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000057145.7