RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for HCAR1 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000049241

Ensembl transcript IDs: ENSMUST00000164267.2, ENSMUST00000164267.3

Found 78 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR GCA 90 bp TGCATTAATGTATTTGGTGGGTGGGTGTGCGCGCGTGCGCATGCGTaGATGTGCGCATGCGTGAACATAGGTGGAGGACAGAACCACCTT +
Preference number: 1 (lower is better)
Translates to: CINVFGGWVCARAHA*MCACVNIGGGQNHL
Trigger: AAGGTGGTTCTGTCCTCCACCTATGTTCACGCATGCGCACATGCACGCATGCGCACGCGCGCACACCCACCCACCAAATACATTAATGCA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000164267.2
3UTR CCA 90 bp TTTGGTGTTCTCCTACCACATGGGTCTCAGGGATACTCAGGTTGGTaGCTTGGCGGCAGACCTGTTTACCTACTGAGCCTTCTCACCAGC +
Preference number: 1 (lower is better)
Translates to: FGVLLPHGSQGYSGW*LGGRPVYLLSLLTS
Trigger: GCTGGTGAGAAGGCTCAGTAGGTAAACAGGTCTGCCGCCAAGCCACCAACCTGAGTATCCCTGAGACCCATGTGGTAGGAGAACACCAAA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000164267.2
3UTR CCA 90 bp GGATTTGGTGTTCTCCTACCACATGGGTCTCAGGGATACTCAGGTTaGTGGCTTGGCGGCAGACCTGTTTACCTACTGAGCCTTCTCACC +
Preference number: 1 (lower is better)
Translates to: GFGVLLPHGSQGYSG*WLGGRPVYLLSLLT
Trigger: GGTGAGAAGGCTCAGTAGGTAAACAGGTCTGCCGCCAAGCCACCAACCTGAGTATCCCTGAGACCCATGTGGTAGGAGAACACCAAATCC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000164267.2
3UTR TCA 90 bp GGAACCTTCTGGAAAAGGTCAAGCAGGGTGGATCCCATTTCTACCTaGGTGAGAAAGATACAGCTAAGAGTGGGAGGGGACATCTTCAAG +
Preference number: 1 (lower is better)
Translates to: GTFWKRSSRVDPIST*VRKIQLRVGGDIFK
Trigger: CTTGAAGATGTCCCCTCCCACTCTTAGCTGTATCTTTCTCACTCAGGTAGAAATGGGATCCACCCTGCTTGACCTTTTCCAGAAGGTTCC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000164267.2
3UTR TCA 90 bp TGCTGCCGTAAACAGGCTCTCAGTTCCCACTGGAGAAACGATAGCTaGTATCAGGTGGACAAGTCCCTCAGCATCTTCTTTGAAATGCAA +
Preference number: 1 (lower is better)
Translates to: CCRKQALSSHWRNDS*YQVDKSLSIFFEMQ
Trigger: TTGCATTTCAAAGAAGATGCTGAGGGACTTGTCCACCTGATATCAGCTATCGTTTCTCCAGTGGGAACTGAGAGCCTGTTTACGGCAGCA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000164267.2
3UTR GCA 90 bp GGTCCCAAGTTCAATGCCCAGCACCAAAGACAAAACAGACGAGGATaGTGGACAGGGTGGGACAACATACTGTGGATTAAACAAAGACTT +
Preference number: 1 (lower is better)
Translates to: GPKFNAQHQRQNRRG*WTGWDNILWIKQRL
Trigger: AAGTCTTTGTTTAATCCACAGTATGTTGTCCCACCCTGTCCAGCATCCTCGTCTGTTTTGTCTTTGGTGCTGGGCATTGAACTTGGGACC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000164267.2
3UTR CCA 90 bp AATGCCCAGCACCAAAGACAAAACAGACGAGGATGCTGGACAGGGTaGGACAACATACTGTGGATTAAACAAAGACTTGAGAAGGGAGGA +
Preference number: 1 (lower is better)
Translates to: NAQHQRQNRRGCWTG*DNILWIKQRLEKGG
Trigger: TCCTCCCTTCTCAAGTCTTTGTTTAATCCACAGTATGTTGTCCCACCCTGTCCAGCATCCTCGTCTGTTTTGTCTTTGGTGCTGGGCATT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000164267.2
3UTR CCA 90 bp CCCAAGTTCAATGCCCAGCACCAAAGACAAAACAGACGAGGATGCTaGACAGGGTGGGACAACATACTGTGGATTAAACAAAGACTTGAG +
Preference number: 1 (lower is better)
Translates to: PKFNAQHQRQNRRGC*TGWDNILWIKQRLE
Trigger: CTCAAGTCTTTGTTTAATCCACAGTATGTTGTCCCACCCTGTCCAGCATCCTCGTCTGTTTTGTCTTTGGTGCTGGGCATTGAACTTGGG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000164267.2
3UTR GCA 90 bp TCAGCAAAATATCGTGGCGCCAGCAAGGTTAGAATAGATTCTTTTTaGTGCCCTCCTGGGCCACCTGGATGTTCAAACCTTGAAATGTGT +
Preference number: 1 (lower is better)
Translates to: SAKYRGASKVRIDSF*CPPGPPGCSNLEMC
Trigger: ACACATTTCAAGGTTTGAACATCCAGGTGGCCCAGGAGGGCAGCAAAAAGAATCTATTCTAACCTTGCTGGCGCCACGATATTTTGCTGA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000164267.2
3UTR CCA 90 bp CCCTTCACCATTGCTATCAGAGTATTTAAACACAACCAACCGGTTTaGAACCTTCTGGAAAAGGTCAAGCAGGGTGGATCCCATTTCTAC +
Preference number: 1 (lower is better)
Translates to: PFTIAIRVFKHNQPV*NLLEKVKQGGSHFY
Trigger: GTAGAAATGGGATCCACCCTGCTTGACCTTTTCCAGAAGGTTCCAAACCGGTTGGTTGTGTTTAAATACTCTGATAGCAATGGTGAAGGG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000164267.2
3UTR CCA 90 bp TATTTATCAACTACTACACGCACATGGTCTTCTTCCGGGCAGACCTaGGAACAACAGATTTCTCATGCTTATGAGTGTACAGTCATTGAA +
Preference number: 1 (lower is better)
Translates to: YLSTTTRTWSSSGQT*EQQISHAYECTVIE
Trigger: TTCAATGACTGTACACTCATAAGCATGAGAAATCTGTTGTTCCCAGGTCTGCCCGGAAGAAGACCATGTGCGTGTAGTAGTTGATAAATA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000164267.2
3UTR CAA 90 bp GGGATTTGGTGTTCTCCTACCACATGGGTCTCAGGGATACTCAGGTaGGTGGCTTGGCGGCAGACCTGTTTACCTACTGAGCCTTCTCAC +
Preference number: 2 (lower is better)
Translates to: GIWCSPTTWVSGILR*VAWRQTCLPTEPSH
Trigger: GTGAGAAGGCTCAGTAGGTAAACAGGTCTGCCGCCAAGCCACCAACCTGAGTATCCCTGAGACCCATGTGGTAGGAGAACACCAAATCCC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000164267.2
3UTR-3UTR CCA 90 bp CTGGGCCACCTGGATGTTCAAACCTTGAAATGTGTGGAGGCTCCCCAGGGAAGACGGTTTGGAACCTTCTaGAAAAGGTCAAGCAGGGTG +
Preference number: 2 (lower is better)
Translates to: LGHLDVQTLKCVEAPQGRRFGTF*KRSSRV
Trigger: CACCCTGCTTGACCTTTTCCAGAAGGTTCCAAACCG...TCTTCCCTGGGGAGCCTCCACACATTTCAAGGTTTGAACATCCAGGTGGCCCAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000164267.2
3UTR-3UTR CCA 90 bp CTCCGAGCTAGAACAAGACCCAGCCAGGCTCATACCGCTTTTCTCAGCCATGCACACAACCAACCGGTTTaGAACCTTCTGGAAAAGGTC +
Preference number: 2 (lower is better)
Translates to: LRARTRPSQAHTAFLSHAHNQPV*NLLEKV
Trigger: GACCTTTTCCAGAAGGTTCCAAACCGGTTGGTTGTG...TGCATGGCTGAGAAAAGCGGTATGAGCCTGGCTGGGTCTTGTTCTAGCTCGGAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000164267.2
3UTR-3UTR CCA 90 bp ACACCCACGGTTTCCTTCACACTCACACGCTGCCCCTTCACCATTGCTATCAGATCTCTGCCTCGTTGTTaGGCTGTTTGTCTTAATGGC +
Preference number: 2 (lower is better)
Translates to: TPTVSFTLTRCPFTIAIRSLPRC*AVCLNG
Trigger: GCCATTAAGACAAACAGCCCAACAACGAGGCAGAGA...TCTGATAGCAATGGTGAAGGGGCAGCGTGTGAGTGTGAAGGAAACCGTGGGTGT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000164267.2
3UTR-3UTR GCA 90 bp CAGGCTCATACCGCTTTTCTCAGCCATGCAAAGCGACACGGGCTCCAGGTAGTTAGATTTAACTCACATTaGCCATTTCTCTGCCTCGTT +
Preference number: 2 (lower is better)
Translates to: QAHTAFLSHAKRHGLQVVRFNSH*PFLCLV
Trigger: AACGAGGCAGAGAAATGGGCAATGTGAGTTAAATCT...AACTACCTGGAGCCCGTGTCGCTTTGCATGGCTGAGAAAAGCGGTATGAGCCTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000164267.2
3UTR-3UTR GCA 90 bp GGCAAAGGAAGCCACAGGGACAACCTTGAGGAGCATCTAATTTATGTCTTTAGATTGGGGGAACATATGTaGTTGAGGGAGGCCCCCAAT +
Preference number: 2 (lower is better)
Translates to: GKGSHRDNLEEHLIYVFRLGEHM*LREAPN
Trigger: ATTGGGGGCCTCCCTCAAGCACATATGTTCCCCCAA...TCTAAAGACATAAATTAGATGCTCCTCAAGGTTGTCCCTGTGGCTTCCTTTGCC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000164267.2
3UTR-3UTR GCA 90 bp GAGTGTACAGTCATTGAATTTGCTCCCAAACCCTTTGGCATCAGTATTAACCCTGCGCATGCGTGCATGTaGGCATGCGTGAACATAGGT +
Preference number: 2 (lower is better)
Translates to: ECTVIEFAPKPFGISINPAHACM*ACVNIG
Trigger: ACCTATGTTCACGCATGCGCACATGCACGCATGCGC...AGGGTTAATACTGATGCCAAAGGGTTTGGGAGCAAATTCAATGACTGTACACTC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000164267.2
3UTR-3UTR CCA 90 bp TCCTGCAGTAAAGGGTCTCGCTCAGCTGGAAATAAGTGTATTGACTCAGTGCAGAAAGGTCAAGCAGGGTaGATCCCATTTCTACCTGAG +
Preference number: 2 (lower is better)
Translates to: SCSKGSRSAGNKCIDSVQKGQAG*IPFLPE
Trigger: CTCAGGTAGAAATGGGATCCACCCTGCTTGACCTTT...CTGCACTGAGTCAATACACTTATTTCCAGCTGAGCGAGACCCTTTACTGCAGGA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000164267.2
3UTR-3UTR CCA 90 bp GGCAAAGGAAGCCACAGGGACAACCTTGAGGAGCATCTAATTTATGTCTTTAGATTTTTGCTGCCCTCCTaGGCCACCTGGATGTTCAAA +
Preference number: 2 (lower is better)
Translates to: GKGSHRDNLEEHLIYVFRFLLPS*ATWMFK
Trigger: TTTGAACATCCAGGTGGCCCAGGAGGGCAGCAAAAA...TCTAAAGACATAAATTAGATGCTCCTCAAGGTTGTCCCTGTGGCTTCCTTTGCC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000164267.2
3UTR-3UTR GCA 90 bp GAGTGTACAGTCATTGAATTTGCTCCCAAACCCTTTGGCATCAGTATTAACCCTTTCACACTCACACGCTaGCCCTTCACCATTGCTATC +
Preference number: 2 (lower is better)
Translates to: ECTVIEFAPKPFGISINPFTLTR*PFTIAI
Trigger: GATAGCAATGGTGAAGGGGCAGCGTGTGAGTGTGAA...AGGGTTAATACTGATGCCAAAGGGTTTGGGAGCAAATTCAATGACTGTACACTC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000164267.2
3UTR-3UTR TCA 90 bp GCTGCCCCTTCACCATTGCTATCAGAGTATTTAAACACAACCAACCGGTTTGGAGATCCCATTTCTACCTaGGTGAGAAAGATACAGCTA +
Preference number: 2 (lower is better)
Translates to: AAPSPLLSEYLNTTNRFGDPIST*VRKIQL
Trigger: TAGCTGTATCTTTCTCACTCAGGTAGAAATGGGATC...TCCAAACCGGTTGGTTGTGTTTAAATACTCTGATAGCAATGGTGAAGGGGCAGC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000164267.2
3UTR CAA 90 bp CTCATGCTTATGAGTGTACAGTCATTGAATTTGCTCCCAAACCCTTaGGCATCAGTATTAACCCTGCTGAACATCAAAACTGAGTGGGGT +
Preference number: 2 (lower is better)
Translates to: LMLMSVQSLNLLPNP*ASVLTLLNIKTEWG
Trigger: ACCCCACTCAGTTTTGATGTTCAGCAGGGTTAATACTGATGCCAAAGGGTTTGGGAGCAAATTCAATGACTGTACACTCATAAGCATGAG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000164267.2
3UTR-3UTR CCA 90 bp GAGTGTACAGTCATTGAATTTGCTCCCAAACCCTTTGGCATCAGTATTAACCCTATAGCTGATATCAGGTaGACAAGTCCCTCAGCATCT +
Preference number: 2 (lower is better)
Translates to: ECTVIEFAPKPFGISINPIADIR*TSPSAS
Trigger: AGATGCTGAGGGACTTGTCCACCTGATATCAGCTAT...AGGGTTAATACTGATGCCAAAGGGTTTGGGAGCAAATTCAATGACTGTACACTC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000164267.2
3UTR-3UTR CCA 90 bp GGCAAAGGAAGCCACAGGGACAACCTTGAGGAGCATCTAATTTATGTCTTTAGACTTTCTCCCAAAAGTTaGCTAACAACGCTACAGCTA +
Preference number: 2 (lower is better)
Translates to: GKGSHRDNLEEHLIYVFRLSPKS*LTTLQL
Trigger: TAGCTGTAGCGTTGTTAGCCAACTTTTGGGAGAAAG...TCTAAAGACATAAATTAGATGCTCCTCAAGGTTGTCCCTGTGGCTTCCTTTGCC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000164267.2
3UTR CAA 90 bp GGGAACAACAGATTTCTCATGCTTATGAGTGTACAGTCATTGAATTaGCTCCCAAACCCTTTGGCATCAGTATTAACCCTGCTGAACATC +
Preference number: 2 (lower is better)
Translates to: GNNRFLMLMSVQSLN*LPNPLASVLTLLNI
Trigger: GATGTTCAGCAGGGTTAATACTGATGCCAAAGGGTTTGGGAGCAAATTCAATGACTGTACACTCATAAGCATGAGAAATCTGTTGTTCCC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000164267.2
3UTR-3UTR CCA 90 bp CAGATTTCTCATGCTTATGAGTGTACAGTCATTGAATTTGCTCCCAAACCCTTTGGACAGAACCACCTTTaGGATTTGGTGTTCTCCTAC +
Preference number: 2 (lower is better)
Translates to: QISHAYECTVIEFAPKPFGQNHL*DLVFSY
Trigger: GTAGGAGAACACCAAATCCCAAAGGTGGTTCTGTCC...AAAGGGTTTGGGAGCAAATTCAATGACTGTACACTCATAAGCATGAGAAATCTG
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000164267.2
3UTR-3UTR TCA 90 bp GAGTGTACAGTCATTGAATTTGCTCCCAAACCCTTTGGCATCAGTATTAACCCTAAGAACAACCATGCTTaGATTAACCCATCCCAAATA +
Preference number: 2 (lower is better)
Translates to: ECTVIEFAPKPFGISINPKNNHA*INPSQI
Trigger: TATTTGGGATGGGTTAATTCAAGCATGGTTGTTCTT...AGGGTTAATACTGATGCCAAAGGGTTTGGGAGCAAATTCAATGACTGTACACTC
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000164267.2
3UTR-3UTR CAA 90 bp GGGAGAGTACCCTGGGAACTGGAGAGAGTGAATGGCTGTCACCACTTTTGTGGCGGGGAACATATGTGCTaGAGGGAGGCCCCCAATAGG +
Preference number: 3 (lower is better)
Translates to: GRVPWELERVNGCHHFCGGEHMC*REAPNR
Trigger: CCTATTGGGGGCCTCCCTCAAGCACATATGTTCCCC...GCCACAAAAGTGGTGACAGCCATTCACTCTCTCCAGTTCCCAGGGTACTCTCCC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000164267.2
3UTR CCA 72 bp CTCCTACCACATGGGTCTCAGGGATACTCAGGTTGGTaGCTTGGCGGCAGACCTGTTTACCTACTGAGCCTT +
Preference number: 3 (lower is better)
Translates to: LLPHGSQGYSGW*LGGRPVYLLSL
Trigger: AAGGCTCAGTAGGTAAACAGGTCTGCCGCCAAGCCACCAACCTGAGTATCCCTGAGACCCATGTGGTAGGAG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000164267.2
3UTR CCA 72 bp GTTCTCCTACCACATGGGTCTCAGGGATACTCAGGTTaGTGGCTTGGCGGCAGACCTGTTTACCTACTGAGC +
Preference number: 3 (lower is better)
Translates to: VLLPHGSQGYSG*WLGGRPVYLLS
Trigger: GCTCAGTAGGTAAACAGGTCTGCCGCCAAGCCACCAACCTGAGTATCCCTGAGACCCATGTGGTAGGAGAAC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000164267.2
3UTR GCA 72 bp CAAGGGGTTTGGGAGTGCAGTTCAGTGGTCAGTGCTTaGCTGGCTCGAATAAGGTCCCAAGTTCAATGCCCA +
Preference number: 3 (lower is better)
Translates to: QGVWECSSVVSA*LARIRSQVQCP
Trigger: TGGGCATTGAACTTGGGACCTTATTCGAGCCAGGCAAGCACTGACCACTGAACTGCACTCCCAAACCCCTTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000164267.2
3UTR CCA 72 bp TGCGCATGCGTGCATGTGCGCATGCGTGAACATAGGTaGAGGACAGAACCACCTTTGGGATTTGGTGTTCTC +
Preference number: 3 (lower is better)
Translates to: CACVHVRMREHR*RTEPPLGFGVL
Trigger: GAGAACACCAAATCCCAAAGGTGGTTCTGTCCTCCACCTATGTTCACGCATGCGCACATGCACGCATGCGCA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000164267.2
3UTR CCA 72 bp GCATGCGTGAACATAGGTGGAGGACAGAACCACCTTTaGGATTTGGTGTTCTCCTACCACATGGGTCTCAGG +
Preference number: 3 (lower is better)
Translates to: ACVNIGGGQNHL*DLVFSYHMGLR
Trigger: CCTGAGACCCATGTGGTAGGAGAACACCAAATCCCAAAGGTGGTTCTGTCCTCCACCTATGTTCACGCATGC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000164267.2
3UTR-3UTR CAA 90 bp AGTTCAATGCCCAGCACCAAAGACAAAACAGACGAGGATGCTGGACAGGGTGGGCTGGATGTTCAAACCTaGAAATGTGTGGAGGCTCCC +
Preference number: 3 (lower is better)
Translates to: SSMPSTKDKTDEDAGQGGLDVQT*KCVEAP
Trigger: GGGAGCCTCCACACATTTCAAGGTTTGAACATCCAG...CCCACCCTGTCCAGCATCCTCGTCTGTTTTGTCTTTGGTGCTGGGCATTGAACT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000164267.2
3UTR GCA 72 bp CGTGGCGCCAGCAAGGTTAGAATAGATTCTTTTTGCTaGCCTCCTGGGCCACCTGGATGTTCAAACCTTGAA +
Preference number: 3 (lower is better)
Translates to: RGASKVRIDSFC*PPGPPGCSNLE
Trigger: TTCAAGGTTTGAACATCCAGGTGGCCCAGGAGGGCAGCAAAAAGAATCTATTCTAACCTTGCTGGCGCCACG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000164267.2
3UTR-3UTR CAA 90 bp AGTTCAATGCCCAGCACCAAAGACAAAACAGACGAGGATGCTGGACAGGGTGGGGCTGCCCCTTCACCATaGCTATCAGAGTATTTAAAC +
Preference number: 3 (lower is better)
Translates to: SSMPSTKDKTDEDAGQGGAAPSP*LSEYLN
Trigger: GTTTAAATACTCTGATAGCAATGGTGAAGGGGCAGC...CCCACCCTGTCCAGCATCCTCGTCTGTTTTGTCTTTGGTGCTGGGCATTGAACT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000164267.2
3UTR TCA 72 bp TGGAAAAGGTCAAGCAGGGTGGATCCCATTTCTACCTaGGTGAGAAAGATACAGCTAAGAGTGGGAGGGGAC +
Preference number: 3 (lower is better)
Translates to: WKRSSRVDPIST*VRKIQLRVGGD
Trigger: GTCCCCTCCCACTCTTAGCTGTATCTTTCTCACTCAGGTAGAAATGGGATCCACCCTGCTTGACCTTTTCCA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000164267.2
3UTR-3UTR CAA 90 bp GGCAAAGGAAGCCACAGGGACAACCTTGAGGAGCATCTAATTTATGTCTTTAGAGCCACCTCTAGTGCTTaGCTTTCTCCCAAAAGTTGG +
Preference number: 3 (lower is better)
Translates to: GKGSHRDNLEEHLIYVFRATSSA*LSPKSW
Trigger: CCAACTTTTGGGAGAAAGCAAAGCACTAGAGGTGGC...TCTAAAGACATAAATTAGATGCTCCTCAAGGTTGTCCCTGTGGCTTCCTTTGCC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000164267.2
3UTR TCA 72 bp AAACAGGCTCTCAGTTCCCACTGGAGAAACGATAGCTaGTATCAGGTGGACAAGTCCCTCAGCATCTTCTTT +
Preference number: 3 (lower is better)
Translates to: KQALSSHWRNDS*YQVDKSLSIFF
Trigger: AAAGAAGATGCTGAGGGACTTGTCCACCTGATATCAGCTATCGTTTCTCCAGTGGGAACTGAGAGCCTGTTT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000164267.2
3UTR GCA 72 bp TCTTCAAGTCCTCCACCCTTCAGATTTAACTCACATTaGCCATTTCTCTGCCTCGTTGTTGGGCTGTTTGTC +
Preference number: 3 (lower is better)
Translates to: SSSPPPFRFNSH*PFLCLVVGLFV
Trigger: GACAAACAGCCCAACAACGAGGCAGAGAAATGGGCAATGTGAGTTAAATCTGAAGGGTGGAGGACTTGAAGA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000164267.2
3UTR CCA 72 bp AGACGAGGATGCTGGACAGGGTGGGACAACATACTGTaGATTAAACAAAGACTTGAGAAGGGAGGATTTCAG +
Preference number: 3 (lower is better)
Translates to: RRGCWTGWDNIL*IKQRLEKGGFQ
Trigger: CTGAAATCCTCCCTTCTCAAGTCTTTGTTTAATCCACAGTATGTTGTCCCACCCTGTCCAGCATCCTCGTCT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000164267.2
3UTR CCA 72 bp AATGCCCAGCACCAAAGACAAAACAGACGAGGATGCTaGACAGGGTGGGACAACATACTGTGGATTAAACAA +
Preference number: 3 (lower is better)
Translates to: NAQHQRQNRRGC*TGWDNILWIKQ
Trigger: TTGTTTAATCCACAGTATGTTGTCCCACCCTGTCCAGCATCCTCGTCTGTTTTGTCTTTGGTGCTGGGCATT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000164267.2
3UTR CCA 72 bp ACTACTACACGCACATGGTCTTCTTCCGGGCAGACCTaGGAACAACAGATTTCTCATGCTTATGAGTGTACA +
Preference number: 3 (lower is better)
Translates to: TTTRTWSSSGQT*EQQISHAYECT
Trigger: TGTACACTCATAAGCATGAGAAATCTGTTGTTCCCAGGTCTGCCCGGAAGAAGACCATGTGCGTGTAGTAGT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000164267.2
3UTR CCA 72 bp GAGTATTTAAACACAACCAACCGGTTTGGAACCTTCTaGAAAAGGTCAAGCAGGGTGGATCCCATTTCTACC +
Preference number: 3 (lower is better)
Translates to: EYLNTTNRFGTF*KRSSRVDPIST
Trigger: GGTAGAAATGGGATCCACCCTGCTTGACCTTTTCCAGAAGGTTCCAAACCGGTTGGTTGTGTTTAAATACTC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000164267.2
3UTR CCA 72 bp CACCAAAGACAAAACAGACGAGGATGCTGGACAGGGTaGGACAACATACTGTGGATTAAACAAAGACTTGAG +
Preference number: 3 (lower is better)
Translates to: HQRQNRRGCWTG*DNILWIKQRLE
Trigger: CTCAAGTCTTTGTTTAATCCACAGTATGTTGTCCCACCCTGTCCAGCATCCTCGTCTGTTTTGTCTTTGGTG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000164267.2
3UTR CCA 72 bp TCAGCAACTATTTATTTATCAACTACTACACGCACATaGTCTTCTTCCGGGCAGACCTGGGAACAACAGATT +
Preference number: 3 (lower is better)
Translates to: SATIYLSTTTRT*SSSGQTWEQQI
Trigger: AATCTGTTGTTCCCAGGTCTGCCCGGAAGAAGACCATGTGCGTGTAGTAGTTGATAAATAAATAGTTGCTGA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000164267.2
3UTR-3UTR CAA 90 bp GAGTGTACAGTCATTGAATTTGCTCCCAAACCCTTTGGCATCAGTATTAACCCTGGATTAAACAAAGACTaGAGAAGGGAGGATTTCAGC +
Preference number: 3 (lower is better)
Translates to: ECTVIEFAPKPFGISINPGLNKD*RREDFS
Trigger: GCTGAAATCCTCCCTTCTCAAGTCTTTGTTTAATCC...AGGGTTAATACTGATGCCAAAGGGTTTGGGAGCAAATTCAATGACTGTACACTC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000164267.2
3UTR TCA 72 bp AGGGAGGATTTCAGCTCAAATTCATGCATTAAGCAGTaGAGAACAACCATGCTTGAATTAACCCATCCCAAA +
Preference number: 3 (lower is better)
Translates to: REDFSSNSCIKQ*RTTMLELTHPK
Trigger: TTTGGGATGGGTTAATTCAAGCATGGTTGTTCTTCACTGCTTAATGCATGAATTTGAGCTGAAATCCTCCCT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000164267.2
3UTR CAA 72 bp TTTGCTGCCCTCCTGGGCCACCTGGATGTTCAAACCTaGAAATGTGTGGAGGCTCCCCAGGGAAGATTTAAA +
Preference number: 4 (lower is better)
Translates to: FAALLGHLDVQT*KCVEAPQGRFK
Trigger: TTTAAATCTTCCCTGGGGAGCCTCCACACATTTCAAGGTTTGAACATCCAGGTGGCCCAGGAGGGCAGCAAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000164267.2
3UTR CAA 72 bp CTGGGAACTGGAGAGAGTGAATGGCTGTCACCACTTTaGTGGCTTGAAAGTGGGACTAAGGTTAACACGGAT +
Preference number: 4 (lower is better)
Translates to: LGTGESEWLSPL*WLESGTKVNTD
Trigger: ATCCGTGTTAACCTTAGTCCCACTTTCAAGCCACAAAAGTGGTGACAGCCATTCACTCTCTCCAGTTCCCAG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000164267.2
3UTR CAA 72 bp CAGGGTGGGACAACATACTGTGGATTAAACAAAGACTaGAGAAGGGAGGATTTCAGCTCAAATTCATGCATT +
Preference number: 4 (lower is better)
Translates to: QGGTTYCGLNKD*RREDFSSNSCI
Trigger: AATGCATGAATTTGAGCTGAAATCCTCCCTTCTCAAGTCTTTGTTTAATCCACAGTATGTTGTCCCACCCTG
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000164267.2
3UTR CAA 72 bp AGATTTCTCATGCTTATGAGTGTACAGTCATTGAATTaGCTCCCAAACCCTTTGGCATCAGTATTAACCCTG +
Preference number: 4 (lower is better)
Translates to: RFLMLMSVQSLN*LPNPLASVLTL
Trigger: CAGGGTTAATACTGATGCCAAAGGGTTTGGGAGCAAATTCAATGACTGTACACTCATAAGCATGAGAAATCT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000164267.2
3UTR CAA 72 bp AACAACAGATTTCTCATGCTTATGAGTGTACAGTCATaGAATTTGCTCCCAAACCCTTTGGCATCAGTATTA +
Preference number: 4 (lower is better)
Translates to: NNRFLMLMSVQS*NLLPNPLASVL
Trigger: TAATACTGATGCCAAAGGGTTTGGGAGCAAATTCAATGACTGTACACTCATAAGCATGAGAAATCTGTTGTT
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000164267.2
CDS CCA 90 bp AGGGCGCCAAGCACGAAGACCAGGATGAGTAGAGGAGGCATCACTTaGGAGATGGGCTCCCCCTCGATGAGACAGCACGACCCGTTGTCC +
Preference number: 5 (lower is better)
Translates to: RAPSTKTRMSRGGIT*EMGSPSMRQHDPLS
Trigger: GGACAACGGGTCGTGCTGTCTCATCGAGGGGGAGCCCATCTCCCAAGTGATGCCTCCTCTACTCATCCTGGTCTTCGTGCTTGGCGCCCT
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000164267.3
CDS GCA 90 bp ATGATGAACCGGGTGGCCCTCCTCATCCGAGCCTGTCTGGTCAGCTaGTGCCTCCGTCTCAGGCTCCAAACAACGTTGACCGAGCAGAAC +
Preference number: 5 (lower is better)
Translates to: MMNRVALLIRACLVS*CLRLRLQTTLTEQN
Trigger: GTTCTGCTCGGTCAACGTTGTTTGGAGCCTGAGACGGAGGCAGCAGCTGACCAGACAGGCTCGGATGAGGAGGGCCACCCGGTTCATCAT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000164267.3
CDS CCA 90 bp GCGGTGGCGGCGGCAGTCCGGTTGGAGATGGCATTCACCATATGGTaGGGGTGGACCACTTTGAAATACCTATCCACAGCCACCACAGTG +
Preference number: 5 (lower is better)
Translates to: AVAAAVRLEMAFTIW*GWTTLKYLSTATTV
Trigger: CACTGTGGTGGCTGTGGATAGGTATTTCAAAGTGGTCCACCCCCACCATATGGTGAATGCCATCTCCAACCGGACTGCCGCCGCCACCGC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000164267.3
CDS CCA 90 bp CAGGCGGTGGCGGCGGCAGTCCGGTTGGAGATGGCATTCACCATATaGTGGGGGTGGACCACTTTGAAATACCTATCCACAGCCACCACA +
Preference number: 5 (lower is better)
Translates to: QAVAAAVRLEMAFTI*WGWTTLKYLSTATT
Trigger: TGTGGTGGCTGTGGATAGGTATTTCAAAGTGGTCCACCCCCACCATATGGTGAATGCCATCTCCAACCGGACTGCCGCCGCCACCGCCTG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000164267.3
CDS CCA 90 bp GCGGCGGCAGTCCGGTTGGAGATGGCATTCACCATATGGTGGGGGTaGACCACTTTGAAATACCTATCCACAGCCACCACAGTGAGGAAG +
Preference number: 5 (lower is better)
Translates to: AAAVRLEMAFTIWWG*TTLKYLSTATTVRK
Trigger: CTTCCTCACTGTGGTGGCTGTGGATAGGTATTTCAAAGTGGTCCACCCCCACCATATGGTGAATGCCATCTCCAACCGGACTGCCGCCGC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000164267.3
CDS TCA 90 bp ATCGATGGAGCTCTTACTGCAGAGGTTCGAAATTGGCATCTCTTCTaGCCTCCGCGTCTTCGTGCGTCCTGGGCGTTTGGGCTTCAGGCT +
Preference number: 5 (lower is better)
Translates to: IDGALTAEVRNWHLF*PPRLRASWAFGLQA
Trigger: AGCCTGAAGCCCAAACGCCCAGGACGCACGAAGACGCGGAGGTCAGAAGAGATGCCAATTTCGAACCTCTGCAGTAAGAGCTCCATCGAT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000164267.3
CDS CCA 90 bp CCCACTGCCCGTCAGATGGCCTCTGGGAACGATTTGCCCCATCGATaGAGCTCTTACTGCAGAGGTTCGAAATTGGCATCTCTTCTGACC +
Preference number: 5 (lower is better)
Translates to: PTARQMASGNDLPHR*SSYCRGSKLASLLT
Trigger: GGTCAGAAGAGATGCCAATTTCGAACCTCTGCAGTAAGAGCTCCATCGATGGGGCAAATCGTTCCCAGAGGCCATCTGACGGGCAGTGGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000164267.3
CDS GCA 90 bp CACTTGGAGATCCCACTGCCCGTCAGATGGCCTCTGGGAACGATTTaGCCCATCGATGGAGCTCTTACTGCAGAGGTTCGAAATTGGCAT +
Preference number: 5 (lower is better)
Translates to: HLEIPLPVRWPLGTI*PIDGALTAEVRNWH
Trigger: ATGCCAATTTCGAACCTCTGCAGTAAGAGCTCCATCGATGGGGCAAATCGTTCCCAGAGGCCATCTGACGGGCAGTGGGATCTCCAAGTG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000164267.3
CDS TCA 90 bp ATGATGAAGCTCTCACAGGACGACAGTGTCCCCTGCACACACAGGTaGCTCTCCATCAGAAGATACACAGTCCCCAAGATGACCAAAGTC +
Preference number: 5 (lower is better)
Translates to: MMKLSQDDSVPCTHR*LSIRRYTVPKMTKV
Trigger: GACTTTGGTCATCTTGGGGACTGTGTATCTTCTGATGGAGAGTCACCTGTGTGTGCAGGGGACACTGTCGTCCTGTGAGAGCTTCATCAT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000164267.3
CDS TCA 90 bp GAGGAGAAAATCGGCCACAGCCAAGTTGAAAAGGTAAATAGTGCTTaGCTTCCAGGTCTTCATGTGAAAGCAGAAGCCGCACAGGGCTAT +
Preference number: 5 (lower is better)
Translates to: EEKIGHSQVEKVNSA*LPGLHVKAEAAQGY
Trigger: ATAGCCCTGTGCGGCTTCTGCTTTCACATGAAGACCTGGAAGTCAAGCACTATTTACCTTTTCAACTTGGCTGTGGCCGATTTTCTCCTC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000164267.3
CDS GCA 72 bp CGGGTGGCCCTCCTCATCCGAGCCTGTCTGGTCAGCTaGTGCCTCCGTCTCAGGCTCCAAACAACGTTGACC +
Preference number: 6 (lower is better)
Translates to: RVALLIRACLVS*CLRLRLQTTLT
Trigger: GGTCAACGTTGTTTGGAGCCTGAGACGGAGGCAGCAGCTGACCAGACAGGCTCGGATGAGGAGGGCCACCCG
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000164267.3
CDS GCA 72 bp AGGTCTTCATGTGAAAGCAGAAGCCGCACAGGGCTATaGCGTTGCCCAGGGCGCCAAGCACGAAGACCAGGA +
Preference number: 6 (lower is better)
Translates to: RSSCESRSRTGL*RCPGRQARRPG
Trigger: TCCTGGTCTTCGTGCTTGGCGCCCTGGGCAACGGCATAGCCCTGTGCGGCTTCTGCTTTCACATGAAGACCT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000164267.3
CDS CCA 72 bp AGCACGAAGACCAGGATGAGTAGAGGAGGCATCACTTaGGAGATGGGCTCCCCCTCGATGAGACAGCACGAC +
Preference number: 6 (lower is better)
Translates to: STKTRMSRGGIT*EMGSPSMRQHD
Trigger: GTCGTGCTGTCTCATCGAGGGGGAGCCCATCTCCCAAGTGATGCCTCCTCTACTCATCCTGGTCTTCGTGCT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000164267.3
CDS TCA 72 bp GCTCTTACTGCAGAGGTTCGAAATTGGCATCTCTTCTaGCCTCCGCGTCTTCGTGCGTCCTGGGCGTTTGGG +
Preference number: 6 (lower is better)
Translates to: ALTAEVRNWHLF*PPRLRASWAFG
Trigger: CCCAAACGCCCAGGACGCACGAAGACGCGGAGGTCAGAAGAGATGCCAATTTCGAACCTCTGCAGTAAGAGC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000164267.3
CDS CCA 72 bp CACACTTGGAGATCCCACTGCCCGTCAGATGGCCTCTaGGAACGATTTGCCCCATCGATGGAGCTCTTACTG +
Preference number: 6 (lower is better)
Translates to: HTWRSHCPSDGL*ERFAPSMELLL
Trigger: CAGTAAGAGCTCCATCGATGGGGCAAATCGTTCCCAGAGGCCATCTGACGGGCAGTGGGATCTCCAAGTGTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000164267.3
CDS CAA 72 bp GTCAGCTGCTGCCTCCGTCTCAGGCTCCAAACAACGTaGACCGAGCAGAACAAGATGATTGTCAGGGGCAGG +
Preference number: 6 (lower is better)
Translates to: VSCCLRLRLQTT*TEQNKMIVRGR
Trigger: CCTGCCCCTGACAATCATCTTGTTCTGCTCGGTCAACGTTGTTTGGAGCCTGAGACGGAGGCAGCAGCTGAC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000164267.3
CDS TCA 72 bp CTCCAGCTGGAACATGACATCGTGCCACCCGTTGGCTaGCTCCATGATGAAGCTCTCACAGGACGACAGTGT +
Preference number: 6 (lower is better)
Translates to: LQLEHDIVPPVG*LHDEALTGRQC
Trigger: ACACTGTCGTCCTGTGAGAGCTTCATCATGGAGTCAGCCAACGGGTGGCACGATGTCATGTTCCAGCTGGAG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000164267.3
CDS CCA 72 bp GCGGCAGTCCGGTTGGAGATGGCATTCACCATATGGTaGGGGTGGACCACTTTGAAATACCTATCCACAGCC +
Preference number: 6 (lower is better)
Translates to: AAVRLEMAFTIW*GWTTLKYLSTA
Trigger: GGCTGTGGATAGGTATTTCAAAGTGGTCCACCCCCACCATATGGTGAATGCCATCTCCAACCGGACTGCCGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000164267.3
CDS CCA 72 bp GCGGCGGCAGTCCGGTTGGAGATGGCATTCACCATATaGTGGGGGTGGACCACTTTGAAATACCTATCCACA +
Preference number: 6 (lower is better)
Translates to: AAAVRLEMAFTI*WGWTTLKYLST
Trigger: TGTGGATAGGTATTTCAAAGTGGTCCACCCCCACCATATGGTGAATGCCATCTCCAACCGGACTGCCGCCGC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000164267.3
CDS CAA 90 bp AACGATTTGCCCCATCGATGGAGCTCTTACTGCAGAGGTTCGAAATaGGCATCTCTTCTGACCTCCGCGTCTTCGTGCGTCCTGGGCGTT +
Preference number: 6 (lower is better)
Translates to: NDLPHRWSSYCRGSK*ASLLTSASSCVLGV
Trigger: AACGCCCAGGACGCACGAAGACGCGGAGGTCAGAAGAGATGCCAATTTCGAACCTCTGCAGTAAGAGCTCCATCGATGGGGCAAATCGTT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000164267.3
CDS CAA 90 bp ACACTTGGAGATCCCACTGCCCGTCAGATGGCCTCTGGGAACGATTaGCCCCATCGATGGAGCTCTTACTGCAGAGGTTCGAAATTGGCA +
Preference number: 6 (lower is better)
Translates to: TLGDPTARQMASGND*PHRWSSYCRGSKLA
Trigger: TGCCAATTTCGAACCTCTGCAGTAAGAGCTCCATCGATGGGGCAAATCGTTCCCAGAGGCCATCTGACGGGCAGTGGGATCTCCAAGTGT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000164267.3
CDS CCA 72 bp CGTCAGATGGCCTCTGGGAACGATTTGCCCCATCGATaGAGCTCTTACTGCAGAGGTTCGAAATTGGCATCT +
Preference number: 6 (lower is better)
Translates to: RQMASGNDLPHR*SSYCRGSKLAS
Trigger: AGATGCCAATTTCGAACCTCTGCAGTAAGAGCTCCATCGATGGGGCAAATCGTTCCCAGAGGCCATCTGACG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000164267.3
CDS TCA 72 bp GACAGGCGATATCTCCAAAAATCCAGTGTCTGCGTCTaGGGTAGTAGTCTGTCCGAAGGGGTAAGCAGATCA +
Preference number: 6 (lower is better)
Translates to: DRRYLQKSSVCV*GSSLSEGVSRS
Trigger: TGATCTGCTTACCCCTTCGGACAGACTACTACCTCAGACGCAGACACTGGATTTTTGGAGATATCGCCTGTC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000164267.3
CDS TCA 72 bp ATCGGCCACAGCCAAGTTGAAAAGGTAAATAGTGCTTaGCTTCCAGGTCTTCATGTGAAAGCAGAAGCCGCA +
Preference number: 6 (lower is better)
Translates to: IGHSQVEKVNSA*LPGLHVKAEAA
Trigger: TGCGGCTTCTGCTTTCACATGAAGACCTGGAAGTCAAGCACTATTTACCTTTTCAACTTGGCTGTGGCCGAT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000164267.3