Pregenerated sensors for HBQ1B (Mus musculus)
Ensembl gene IDs: ENSMUSG00000073063Ensembl transcript IDs: ENSMUST00000101387.4
Found 13 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS-3UTR CCA 90 bp | ATTGTGAGCTTTAGGAAGGGCATGGGTGGAGACTATAGAACCCTGTATCCCCAAGCATCGGCCACCTTTTaGGCATGGGCTTTAACCTGG | + |
|
Preference number: 4 (lower is better) Translates to: IVSFRKGMGGDYRTLYPQASATF*AWALTW Trigger: CCAGGTTAAAGCCCATGCCCAAAAGGTGGCCGATGC...TTGGGGATACAGGGTTCTATAGTCTCCACCCATGCCCTTCCTAAAGCTCACAAT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000101387.4 |
||
| CDS-3UTR TCA 90 bp | AACATTGTGAGCTTTAGGAAGGGCATGGGTGGAGACTATAGAACCCTGTATCCCAGTGCCGAAGTCACGTaGCCCAGAAACTTGTCCAAG | + |
|
Preference number: 4 (lower is better) Translates to: NIVSFRKGMGGDYRTLYPSAEVT*PRNLSK Trigger: CTTGGACAAGTTTCTGGGTCACGTGACTTCGGCACT...GGGATACAGGGTTCTATAGTCTCCACCCATGCCCTTCCTAAAGCTCACAATGTT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000101387.4 |
||
| CDS-3UTR GCA 90 bp | AGCCCTGGGGAGGTTTACTCAAACATTGTGAGCTTTAGGAAGGGCATGGGTGGACGTAGATTCCGACATTaGTGCCCATCTTCTTCCAGA | + |
|
Preference number: 4 (lower is better) Translates to: SPGEVYSNIVSFRKGMGGRRFRH*CPSSSR Trigger: TCTGGAAGAAGATGGGCAGCAATGTCGGAATCTACG...TCCACCCATGCCCTTCCTAAAGCTCACAATGTTTGAGTAAACCTCCCCAGGGCT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000101387.4 |
||
| CDS-3UTR CCA 90 bp | CCTGGGGAGGTTTACTCAAACATTGTGAGCTTTAGGAAGGGCATGGGTGGAGACGTCACCAGCAGACAGTaGCTGAAGAACTGGAAGTTA | + |
|
Preference number: 4 (lower is better) Translates to: PGEVYSNIVSFRKGMGGDVTSRQ*LKNWKL Trigger: TAACTTCCAGTTCTTCAGCCACTGTCTGCTGGTGAC...GTCTCCACCCATGCCCTTCCTAAAGCTCACAATGTTTGAGTAAACCTCCCCAGG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000101387.4 |
||
| CDS-3UTR GCA 90 bp | AACATTGTGAGCTTTAGGAAGGGCATGGGTGGAGACTATAGAACCCTGTATCCCAGATTCCGACATTGCTaGCCATCTTCTTCCAGAGCG | + |
|
Preference number: 4 (lower is better) Translates to: NIVSFRKGMGGDYRTLYPRFRHC*PSSSRA Trigger: CGCTCTGGAAGAAGATGGGCAGCAATGTCGGAATCT...GGGATACAGGGTTCTATAGTCTCCACCCATGCCCTTCCTAAAGCTCACAATGTT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000101387.4 |
||
| CDS-3UTR CCA 90 bp | GTTTACTCAAACATTGTGAGCTTTAGGAAGGGCATGGGTGGAGACTATAGAACCGGAAGTAGGTTTTGGTaGAGGGGAAAGCCACGAAGG | + |
|
Preference number: 4 (lower is better) Translates to: VYSNIVSFRKGMGGDYRTGSRFW*RGKPRR Trigger: CCTTCGTGGCTTTCCCCTCCACCAAAACCTACTTCC...GGTTCTATAGTCTCCACCCATGCCCTTCCTAAAGCTCACAATGTTTGAGTAAAC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000101387.4 |
||
| CDS-3UTR GCA 90 bp | GTTTACTCAAACATTGTGAGCTTTAGGAAGGGCATGGGTGGAGACTATAGAACCTTGTCCAAGGAGGCATaGATCTCTGGGCTGAAGTCT | + |
|
Preference number: 4 (lower is better) Translates to: VYSNIVSFRKGMGGDYRTLSKEA*ISGLKS Trigger: AGACTTCAGCCCAGAGATGCATGCCTCCTTGGACAA...GGTTCTATAGTCTCCACCCATGCCCTTCCTAAAGCTCACAATGTTTGAGTAAAC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000101387.4 |
||
| CDS CCA 90 bp | GGCATGGGCTTTAACCTGGCTAGAGCCTGGCCTCAGGTCCAAGTGTaGGAAGTAGGTTTTGGTGGAGGGGAAAGCCACGAAGGTCCTCTC | + |
|
Preference number: 5 (lower is better) Translates to: GMGFNLARAWPQVQV*EVGFGGGESHEGPL Trigger: GAGAGGACCTTCGTGGCTTTCCCCTCCACCAAAACCTACTTCCCACACTTGGACCTGAGGCCAGGCTCTAGCCAGGTTAAAGCCCATGCC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000101387.4 |
||
| CDS GCA 90 bp | CAGTGGCTGAAGAACTGGAAGTTAGCAGGGTCCACACAGAGCTTGTaGGCATGTAGATCACTGAGAGCAGACAGAGAAGCAGGCAGGTCG | + |
|
Preference number: 5 (lower is better) Translates to: QWLKNWKLAGSTQSL*ACRSLRADREAGRS Trigger: CGACCTGCCTGCTTCTCTGTCTGCTCTCAGTGATCTACATGCGCACAAGCTCTGTGTGGACCCTGCTAACTTCCAGTTCTTCAGCCACTG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000101387.4 |
||
| CDS TCA 72 bp | CCAGAAACTTGTCCAAGGAGGCATGCATCTCTGGGCTaGAGTCTCCAGGATAGTGCCTGGCGAGAGTCACCA | + |
|
Preference number: 6 (lower is better) Translates to: PETCPRRHASLG*SLQDSAWRESP Trigger: TGGTGACTCTCGCCAGGCACTATCCTGGAGACTTCAGCCCAGAGATGCATGCCTCCTTGGACAAGTTTCTGG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000101387.4 |
||
| CDS CCA 72 bp | GTGACCCAGAAACTTGTCCAAGGAGGCATGCATCTCTaGGCTGAAGTCTCCAGGATAGTGCCTGGCGAGAGT | + |
|
Preference number: 6 (lower is better) Translates to: VTQKLVQGGMHL*AEVSRIVPGES Trigger: ACTCTCGCCAGGCACTATCCTGGAGACTTCAGCCCAGAGATGCATGCCTCCTTGGACAAGTTTCTGGGTCAC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000101387.4 |
||
| CDS CAA 90 bp | AGACAGTGGCTGAAGAACTGGAAGTTAGCAGGGTCCACACAGAGCTaGTGCGCATGTAGATCACTGAGAGCAGACAGAGAAGCAGGCAGG | + |
|
Preference number: 6 (lower is better) Translates to: RQWLKNWKLAGSTQS*CACRSLRADREAGR Trigger: CCTGCCTGCTTCTCTGTCTGCTCTCAGTGATCTACATGCGCACAAGCTCTGTGTGGACCCTGCTAACTTCCAGTTCTTCAGCCACTGTCT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000101387.4 |
||
| CDS CAA 72 bp | CTGAAGAACTGGAAGTTAGCAGGGTCCACACAGAGCTaGTGCGCATGTAGATCACTGAGAGCAGACAGAGAA | + |
|
Preference number: 6 (lower is better) Translates to: LKNWKLAGSTQS*CACRSLRADRE Trigger: TTCTCTGTCTGCTCTCAGTGATCTACATGCGCACAAGCTCTGTGTGGACCCTGCTAACTTCCAGTTCTTCAG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000101387.4 |
||