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Pregenerated sensors for HBQ1A (Mus musculus)

Ensembl gene IDs: ENSMUSG00000020295

Ensembl transcript IDs: ENSMUST00000020535.2

Found 12 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
CDS-3UTR TCA 90 bp AGGCAATGCAGCCCTGGGGAAGTTTACTCAAACATTGTAAGCTTTAGGAAGGGCGCGCATGTAGATCACTaGGAGCAGACAGAGAAGCAG +
Preference number: 4 (lower is better)
Translates to: RQCSPGEVYSNIVSFRKGAHVDH*EQTEKQ
Trigger: CTGCTTCTCTGTCTGCTCTCAGTGATCTACATGCGC...GCCCTTCCTAAAGCTTACAATGTTTGAGTAAACTTCCCCAGGGCTGCATTGCCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000020535.2
CDS-3UTR TCA 90 bp AGGCAATGCAGCCCTGGGGAAGTTTACTCAAACATTGTAAGCTTTAGGAAGGGCAGTGCAAAAGTCACATaGCCCAGACACGTGTCCAAG +
Preference number: 4 (lower is better)
Translates to: RQCSPGEVYSNIVSFRKGSAKVT*PRHVSK
Trigger: CTTGGACACGTGTCTGGGTCATGTGACTTTTGCACT...GCCCTTCCTAAAGCTTACAATGTTTGAGTAAACTTCCCCAGGGCTGCATTGCCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000020535.2
CDS-3UTR GCA 90 bp AGCCCTGGGGAAGTTTACTCAAACATTGTAAGCTTTAGGAAGGGCATGACTGGATGTAGATTCCGACATTaGTGCCCATCTTCTTCCAGA +
Preference number: 4 (lower is better)
Translates to: SPGEVYSNIVSFRKGMTGCRFRH*CPSSSR
Trigger: TCTGGAAGAAGATGGGCAGCAATGTCGGAATCTACA...TCCAGTCATGCCCTTCCTAAAGCTTACAATGTTTGAGTAAACTTCCCCAGGGCT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000020535.2
CDS-3UTR GCA 90 bp CAGAGGCAATGCAGCCCTGGGGAAGTTTACTCAAACATTGTAAGCTTTAGGAAGTTACTTGAAGTCCAGTaGAAAAGTCACATGACCCAG +
Preference number: 4 (lower is better)
Translates to: QRQCSPGEVYSNIVSFRKLLEVQ*KSHMTQ
Trigger: CTGGGTCATGTGACTTTTGCACTGGACTTCAAGTAA...CTTCCTAAAGCTTACAATGTTTGAGTAAACTTCCCCAGGGCTGCATTGCCTCTG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000020535.2
CDS GCA 90 bp CAGCAGCTGAAGAACTGGAAGTTAGCAGGGTCCACACAGAGCTTGTaGGCATGTAGATCACTGAGAGCAGACAGAGAAGCAGGCAGGTCG +
Preference number: 5 (lower is better)
Translates to: QQLKNWKLAGSTQSL*ACRSLRADREAGRS
Trigger: CGACCTGCCTGCTTCTCTGTCTGCTCTCAGTGATCTACATGCGCACAAGCTCTGTGTGGACCCTGCTAACTTCCAGTTCTTCAGCTGCTG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000020535.2
CDS-3UTR CAA 90 bp CAGGCACACATGCACAGAGGCAATGCAGCCCTGGGGAAGTTTACTCAAACATTGTCAATTCAGCATTACTaGAAGTCCAGTGCAAAAGTC +
Preference number: 5 (lower is better)
Translates to: QAHMHRGNAALGKFTQTLSIQHY*KSSAKV
Trigger: GACTTTTGCACTGGACTTCAAGTAATGCTGAATTGA...CAATGTTTGAGTAAACTTCCCCAGGGCTGCATTGCCTCTGTGCATGTGTGCCTG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000020535.2
CDS GCA 72 bp AGGCAGGTCGTCCAGGTGCTGGGTAGCGAGAGTCAGTaGATCGGCCACCTTTTGGGCATGGGCTTTAACCTG +
Preference number: 6 (lower is better)
Translates to: RQVVQVLGSESQ*IGHLLGMGFNL
Trigger: CAGGTTAAAGCCCATGCCCAAAAGGTGGCCGATGCACTGACTCTCGCTACCCAGCACCTGGACGACCTGCCT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000020535.2
CDS GCA 72 bp CTGAGAGCAGACAGAGAAGCAGGCAGGTCGTCCAGGTaGTGGGTAGCGAGAGTCAGTGCATCGGCCACCTTT +
Preference number: 6 (lower is better)
Translates to: LRADREAGRSSR*WVARVSASATF
Trigger: AAAGGTGGCCGATGCACTGACTCTCGCTACCCAGCACCTGGACGACCTGCCTGCTTCTCTGTCTGCTCTCAG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000020535.2
CDS CCA 72 bp CTGGCGAGAGTCACCAGCAGACAGCAGCTGAAGAACTaGAAGTTAGCAGGGTCCACACAGAGCTTGTGCGCA +
Preference number: 6 (lower is better)
Translates to: LARVTSRQQLKN*KLAGSTQSLCA
Trigger: TGCGCACAAGCTCTGTGTGGACCCTGCTAACTTCCAGTTCTTCAGCTGCTGTCTGCTGGTGACTCTCGCCAG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000020535.2
CDS CAA 90 bp AGACAGCAGCTGAAGAACTGGAAGTTAGCAGGGTCCACACAGAGCTaGTGCGCATGTAGATCACTGAGAGCAGACAGAGAAGCAGGCAGG +
Preference number: 6 (lower is better)
Translates to: RQQLKNWKLAGSTQS*CACRSLRADREAGR
Trigger: CCTGCCTGCTTCTCTGTCTGCTCTCAGTGATCTACATGCGCACAAGCTCTGTGTGGACCCTGCTAACTTCCAGTTCTTCAGCTGCTGTCT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000020535.2
CDS GCA 72 bp AAGAACTGGAAGTTAGCAGGGTCCACACAGAGCTTGTaGGCATGTAGATCACTGAGAGCAGACAGAGAAGCA +
Preference number: 6 (lower is better)
Translates to: KNWKLAGSTQSL*ACRSLRADREA
Trigger: TGCTTCTCTGTCTGCTCTCAGTGATCTACATGCGCACAAGCTCTGTGTGGACCCTGCTAACTTCCAGTTCTT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000020535.2
CDS TCA 72 bp ATTCAGCATTACTTGAAGTCCAGTGCAAAAGTCACATaGCCCAGACACGTGTCCAAGGAGACATGCATCTTT +
Preference number: 6 (lower is better)
Translates to: IQHYLKSSAKVT*PRHVSKETCIF
Trigger: AAAGATGCATGTCTCCTTGGACACGTGTCTGGGTCATGTGACTTTTGCACTGGACTTCAAGTAATGCTGAAT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000020535.2