RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for HBEGF (Mus musculus)

Ensembl gene IDs: ENSMUSG00000024486

Ensembl transcript IDs: ENSMUST00000025363.7

Found 80 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR TCA 90 bp GAGGACCAGGAAGGCCTGAAGGGCTCACTCGATCCTGCTTTCTTCTaGTCCGGATCCCAGCGGGCATGGTCTGTTTGGCACTTAGAGGCT +
Preference number: 1 (lower is better)
Translates to: EDQEGLKGSLDPAFF*SGSQRAWSVWHLEA
Trigger: AGCCTCTAAGTGCCAAACAGACCATGCCCGCTGGGATCCGGATCAGAAGAAAGCAGGATCGAGTGAGCCCTTCAGGCCTTCCTGGTCCTC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000025363.7
3UTR GCA 90 bp TTCAATGGAGGAGGACCAGGAAGGCCTGAAGGGCTCACTCGATCCTaGTTTCTTCTGATCCGGATCCCAGCGGGCATGGTCTGTTTGGCA +
Preference number: 1 (lower is better)
Translates to: FNGGGPGRPEGLTRS*FLLIRIPAGMVCLA
Trigger: TGCCAAACAGACCATGCCCGCTGGGATCCGGATCAGAAGAAAGCAGGATCGAGTGAGCCCTTCAGGCCTTCCTGGTCCTCCTCCATTGAA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000025363.7
3UTR GCA 90 bp GGCTTTCGGAACACGAACGGTAGACAAAAATCACCTAGGCAAGACTaGAGTCCAACTCACAGAGTGGCTCCGCCCAAACCGATCCCTGCA +
Preference number: 1 (lower is better)
Translates to: GFRNTNGRQKSPRQD*SPTHRVAPPKPIPA
Trigger: TGCAGGGATCGGTTTGGGCGGAGCCACTCTGTGAGTTGGACTGCAGTCTTGCCTAGGTGATTTTTGTCTACCGTTCGTGTTCCGAAAGCC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000025363.7
3UTR CCA 90 bp GTAGACAAAAATCACCTAGGCAAGACTGCAGTCCAACTCACAGAGTaGCTCCGCCCAAACCGATCCCTGCACTCTGACCATACACAACCT +
Preference number: 1 (lower is better)
Translates to: VDKNHLGKTAVQLTE*LRPNRSLHSDHTQP
Trigger: AGGTTGTGTATGGTCAGAGTGCAGGGATCGGTTTGGGCGGAGCCACTCTGTGAGTTGGACTGCAGTCTTGCCTAGGTGATTTTTGTCTAC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000025363.7
3UTR CCA 90 bp TCCGCCCAAACCGATCCCTGCACTCTGACCATACACAACCTACCCTaGGATATTCTGCTCCAGGGACATCTTCTGAAATGTAGACAGACA +
Preference number: 1 (lower is better)
Translates to: SAQTDPCTLTIHNLP*DILLQGHLLKCRQT
Trigger: TGTCTGTCTACATTTCAGAAGATGTCCCTGGAGCAGAATATCCCAGGGTAGGTTGTGTATGGTCAGAGTGCAGGGATCGGTTTGGGCGGA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000025363.7
3UTR GCA 90 bp TTCTCGAGCTTGCGGTATTTCACAGTTAGTTCATCAAATCCAGCGTaGTGGAGGGTCCAAACAGCAGATCCCTTGCGGCTACTTGAACAC +
Preference number: 1 (lower is better)
Translates to: FSSLRYFTVSSSNPA*WRVQTADPLRLLEH
Trigger: GTGTTCAAGTAGCCGCAAGGGATCTGCTGTTTGGACCCTCCAGCACGCTGGATTTGATGAACTAACTGTGAAATACCGCAAGCTCGAGAA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000025363.7
3UTR CCA 90 bp TCGAGCTTGCGGTATTTCACAGTTAGTTCATCAAATCCAGCGTGCTaGAGGGTCCAAACAGCAGATCCCTTGCGGCTACTTGAACACATA +
Preference number: 1 (lower is better)
Translates to: SSLRYFTVSSSNPAC*RVQTADPLRLLEHI
Trigger: TATGTGTTCAAGTAGCCGCAAGGGATCTGCTGTTTGGACCCTCCAGCACGCTGGATTTGATGAACTAACTGTGAAATACCGCAAGCTCGA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000025363.7
3UTR TCA 90 bp CCTTCCCTCCCACCAACCTTCCCTATAGTAATTGATAGGTATCAATaGCCAAGAATAGTCAACTCCAAAGCTCCCTGCTCTTCCTCAGCC +
Preference number: 1 (lower is better)
Translates to: PSLPPTFPIVIDRYQ*PRIVNSKAPCSSSA
Trigger: GGCTGAGGAAGAGCAGGGAGCTTTGGAGTTGACTATTCTTGGTCATTGATACCTATCAATTACTATAGGGAAGGTTGGTGGGAGGGAAGG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000025363.7
3UTR GCA 90 bp GCAGATCCCTTGCGGCTACTTGAACACATAGCTTCTCAGCTCTGTTaGTCTCTTCCAGTCCATAAACCATTTAACCTTCCTCTCCTTTTT +
Preference number: 1 (lower is better)
Translates to: ADPLRLLEHIASQLC*SLPVHKPFNLPLLF
Trigger: AAAAAGGAGAGGAAGGTTAAATGGTTTATGGACTGGAAGAGAGCAACAGAGCTGAGAAGCTATGTGTTCAAGTAGCCGCAAGGGATCTGC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000025363.7
3UTR CCA 90 bp CAGGGACATCTTCTGAAATGTAGACAGACAATAAATTACTACCGATaGGTTACAGAGCAAATAGGACCCAGCGTGGCATTGAGCCAGATG +
Preference number: 1 (lower is better)
Translates to: QGHLLKCRQTINYYR*VTEQIGPSVALSQM
Trigger: CATCTGGCTCAATGCCACGCTGGGTCCTATTTGCTCTGTAACCCATCGGTAGTAATTTATTGTCTGTCTACATTTCAGAAGATGTCCCTG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000025363.7
3UTR CCA 90 bp ACACAGGCAAACACCAATATCTATTACACGCTAACATCAGCACCTTaGGCTTTCGGAACACGAACGGTAGACAAAAATCACCTAGGCAAG +
Preference number: 1 (lower is better)
Translates to: TQANTNIYYTLTSAP*AFGTRTVDKNHLGK
Trigger: CTTGCCTAGGTGATTTTTGTCTACCGTTCGTGTTCCGAAAGCCCAAGGTGCTGATGTTAGCGTGTAATAGATATTGGTGTTTGCCTGTGT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000025363.7
3UTR-3UTR CCA 90 bp GGTTACAGAGCAAATAGGACCCAGCGTGGCATTGAGCCAGATGGTGGAGCGCAGGGATCCCAGCGGGCATaGTCTGTTTGGCACTTAGAG +
Preference number: 2 (lower is better)
Translates to: GYRANRTQRGIEPDGGAQGSQRA*SVWHLE
Trigger: CTCTAAGTGCCAAACAGACCATGCCCGCTGGGATCC...CTGCGCTCCACCATCTGGCTCAATGCCACGCTGGGTCCTATTTGCTCTGTAACC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000025363.7
3UTR-3UTR CCA 90 bp ATTGAGCCAGATGGTGGAGCGCAGAGAAGTGGGCCAGGACATTGCCAAAGTAACAACCAGTGGGTTCAATaGAGGAGGACCAGGAAGGCC +
Preference number: 2 (lower is better)
Translates to: IEPDGGAQRSGPGHCQSNNQWVQ*RRTRKA
Trigger: GGCCTTCCTGGTCCTCCTCCATTGAACCCACTGGTT...GTTACTTTGGCAATGTCCTGGCCCACTTCTCTGCGCTCCACCATCTGGCTCAAT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000025363.7
3UTR-3UTR CCA 90 bp CAACCCCTGCACGAAGTAGCACCCGAAGAACAGCAGGATAAGGGAAATGTCTTGGGACCAGGAAGCCCATaGACTTCCTGCAGGCATGGA +
Preference number: 2 (lower is better)
Translates to: QPLHEVAPEEQQDKGNVLGPGSP*TSCRHG
Trigger: TCCATGCCTGCAGGAAGTCCATGGGCTTCCTGGTCC...CAAGACATTTCCCTTATCCTGCTGTTCTTCGGGTGCTACTTCGTGCAGGGGTTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000025363.7
3UTR-3UTR TCA 90 bp CGGTATTTCACAGTTAGTTCATCAAATCCAGCGTGCTGGAGGGTCCAAACAGCAAGGACCAGGAAGGCCTaGAGGGCTCACTCGATCCTG +
Preference number: 2 (lower is better)
Translates to: RYFTVSSSNPACWRVQTARTRKA*RAHSIL
Trigger: CAGGATCGAGTGAGCCCTTCAGGCCTTCCTGGTCCT...TGCTGTTTGGACCCTCCAGCACGCTGGATTTGATGAACTAACTGTGAAATACCG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000025363.7
3UTR-3UTR GCA 90 bp TGGCTCCGCCCAAACCGATCCCTGCACTCTGACCATACACAACCTACCCTGGGAGCTTCTCAGCTCTGTTaGTCTCTTCCAGTCCATAAA +
Preference number: 2 (lower is better)
Translates to: WLRPNRSLHSDHTQPTLGASQLC*SLPVHK
Trigger: TTTATGGACTGGAAGAGAGCAACAGAGCTGAGAAGC...TCCCAGGGTAGGTTGTGTATGGTCAGAGTGCAGGGATCGGTTTGGGCGGAGCCA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000025363.7
3UTR-3UTR CCA 90 bp CCAAACCGATCCCTGCACTCTGACCATACACAACCTACCCTGGGATATTCTGCTTGGAGCGCAGAGAAGTaGGCCAGGACATTGCCAAAG +
Preference number: 2 (lower is better)
Translates to: PNRSLHSDHTQPTLGYSAWSAEK*ARTLPK
Trigger: CTTTGGCAATGTCCTGGCCCACTTCTCTGCGCTCCA...AGCAGAATATCCCAGGGTAGGTTGTGTATGGTCAGAGTGCAGGGATCGGTTTGG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000025363.7
3UTR-3UTR CCA 90 bp TTCTCCAAACTGTCCTGTGCTCTGCCAACCCCTGCACGAAGTAGCACCCGAAGAATACACAACCTACCCTaGGATATTCTGCTCCAGGGA +
Preference number: 2 (lower is better)
Translates to: FSKLSCALPTPARSSTRRIHNLP*DILLQG
Trigger: TCCCTGGAGCAGAATATCCCAGGGTAGGTTGTGTAT...TCTTCGGGTGCTACTTCGTGCAGGGGTTGGCAGAGCACAGGACAGTTTGGAGAA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000025363.7
3UTR CAA 90 bp CCCATGGACTTCCTGCAGGCATGGATGCTCAATCTCTTCTGGGATTaGGCAGGGAGAGGACACAGGCAAACACCAATATCTATTACACGC +
Preference number: 2 (lower is better)
Translates to: PMDFLQAWMLNLFWD*AGRGHRQTPISITR
Trigger: GCGTGTAATAGATATTGGTGTTTGCCTGTGTCCTCTCCCTGCCAAATCCCAGAAGAGATTGAGCATCCATGCCTGCAGGAAGTCCATGGG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000025363.7
3UTR-3UTR TCA 90 bp GAGAGGACACAGGCAAACACCAATATCTATTACACGCTAACATCAGCACCTTGGGATCCTGCTTTCTTCTaGTCCGGATCCCAGCGGGCA +
Preference number: 2 (lower is better)
Translates to: ERTQANTNIYYTLTSAPWDPAFF*SGSQRA
Trigger: TGCCCGCTGGGATCCGGATCAGAAGAAAGCAGGATC...CCAAGGTGCTGATGTTAGCGTGTAATAGATATTGGTGTTTGCCTGTGTCCTCTC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000025363.7
3UTR-3UTR GCA 90 bp CAAATAGGACCCAGCGTGGCATTGAGCCAGATGGTGGAGCGCAGAGAAGTGGGCAAGAGTTCTCGAGCTTaGGGTATTTCACAGTTAGTT +
Preference number: 2 (lower is better)
Translates to: QIGPSVALSQMVERREVGKSSRA*GISQLV
Trigger: AACTAACTGTGAAATACCGCAAGCTCGAGAACTCTT...GCCCACTTCTCTGCGCTCCACCATCTGGCTCAATGCCACGCTGGGTCCTATTTG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000025363.7
3UTR-3UTR CCA 90 bp TCTCGAGCTTGCGGTATTTCACAGTTAGTTCATCAAATCCAGCGTGCTGGAGGGCGGGCATGGTCTGTTTaGCACTTAGAGGCTCTGAGA +
Preference number: 2 (lower is better)
Translates to: SRACGISQLVHQIQRAGGRAWSV*HLEALR
Trigger: TCTCAGAGCCTCTAAGTGCCAAACAGACCATGCCCG...CCCTCCAGCACGCTGGATTTGATGAACTAACTGTGAAATACCGCAAGCTCGAGA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000025363.7
3UTR-3UTR CCA 90 bp CAAATAGGACCCAGCGTGGCATTGAGCCAGATGGTGGAGCGCAGAGAAGTGGGCTCCAGTCAAAAATCCTaGAGCATATGGAAACTAGCT +
Preference number: 2 (lower is better)
Translates to: QIGPSVALSQMVERREVGSSQKS*SIWKLA
Trigger: AGCTAGTTTCCATATGCTCCAGGATTTTTGACTGGA...GCCCACTTCTCTGCGCTCCACCATCTGGCTCAATGCCACGCTGGGTCCTATTTG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000025363.7
3UTR CAA 90 bp AGTTCATCAAATCCAGCGTGCTGGAGGGTCCAAACAGCAGATCCCTaGCGGCTACTTGAACACATAGCTTCTCAGCTCTGTTGCTCTCTT +
Preference number: 2 (lower is better)
Translates to: SSSNPACWRVQTADP*RLLEHIASQLCCSL
Trigger: AAGAGAGCAACAGAGCTGAGAAGCTATGTGTTCAAGTAGCCGCAAGGGATCTGCTGTTTGGACCCTCCAGCACGCTGGATTTGATGAACT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000025363.7
3UTR-3UTR GCA 90 bp GAGGACACAGGCAAACACCAATATCTATTACACGCTAACATCAGCACCTTGGGCTCATCAAATCCAGCGTaGTGGAGGGTCCAAACAGCA +
Preference number: 2 (lower is better)
Translates to: EDTGKHQYLLHANISTLGSSNPA*WRVQTA
Trigger: TGCTGTTTGGACCCTCCAGCACGCTGGATTTGATGA...GCCCAAGGTGCTGATGTTAGCGTGTAATAGATATTGGTGTTTGCCTGTGTCCTC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000025363.7
3UTR-3UTR CCA 90 bp ACTCGATCCTGCTTTCTTCTGATCCGGATCCCAGCGGGCATGGTCTGTTTGGCAATGAAGACGTTTTCATaGCTGCTGGTGAAATATTTC +
Preference number: 2 (lower is better)
Translates to: TRSCFLLIRIPAGMVCLAMKTFS*LLVKYF
Trigger: GAAATATTTCACCAGCAGCCATGAAAACGTCTTCAT...TGCCAAACAGACCATGCCCGCTGGGATCCGGATCAGAAGAAAGCAGGATCGAGT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000025363.7
3UTR-3UTR TCA 90 bp CCAAACCGATCCCTGCACTCTGACCATACACAACCTACCCTGGGATATTCTGCTTTTCATGGCTGCTGGTaGAATATTTCTCCTCTATGT +
Preference number: 2 (lower is better)
Translates to: PNRSLHSDHTQPTLGYSAFHGCW*NISPLC
Trigger: ACATAGAGGAGAAATATTTCACCAGCAGCCATGAAA...AGCAGAATATCCCAGGGTAGGTTGTGTATGGTCAGAGTGCAGGGATCGGTTTGG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000025363.7
3UTR CAA 90 bp GACACAGGCAAACACCAATATCTATTACACGCTAACATCAGCACCTaGGGCTTTCGGAACACGAACGGTAGACAAAAATCACCTAGGCAA +
Preference number: 2 (lower is better)
Translates to: DTGKHQYLLHANIST*GFRNTNGRQKSPRQ
Trigger: TTGCCTAGGTGATTTTTGTCTACCGTTCGTGTTCCGAAAGCCCAAGGTGCTGATGTTAGCGTGTAATAGATATTGGTGTTTGCCTGTGTC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000025363.7
3UTR TCA 72 bp GAAGGCCTGAAGGGCTCACTCGATCCTGCTTTCTTCTaGTCCGGATCCCAGCGGGCATGGTCTGTTTGGCAC +
Preference number: 3 (lower is better)
Translates to: EGLKGSLDPAFF*SGSQRAWSVWH
Trigger: GTGCCAAACAGACCATGCCCGCTGGGATCCGGATCAGAAGAAAGCAGGATCGAGTGAGCCCTTCAGGCCTTC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000025363.7
3UTR TCA 72 bp CACAGAGTGGCTCCGCCCAAACCGATCCCTGCACTCTaGCCATACACAACCTACCCTGGGATATTCTGCTCC +
Preference number: 3 (lower is better)
Translates to: HRVAPPKPIPAL*PYTTYPGIFCS
Trigger: GGAGCAGAATATCCCAGGGTAGGTTGTGTATGGTCAGAGTGCAGGGATCGGTTTGGGCGGAGCCACTCTGTG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000025363.7
3UTR GCA 72 bp GGACCAGGAAGCCCATGGACTTCCTGCAGGCATGGATaGTCAATCTCTTCTGGGATTTGGCAGGGAGAGGAC +
Preference number: 3 (lower is better)
Translates to: GPGSPWTSCRHG*SISSGIWQGED
Trigger: GTCCTCTCCCTGCCAAATCCCAGAAGAGATTGAGCATCCATGCCTGCAGGAAGTCCATGGGCTTCCTGGTCC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000025363.7
3UTR CCA 72 bp AATCACCTAGGCAAGACTGCAGTCCAACTCACAGAGTaGCTCCGCCCAAACCGATCCCTGCACTCTGACCAT +
Preference number: 3 (lower is better)
Translates to: NHLGKTAVQLTE*LRPNRSLHSDH
Trigger: ATGGTCAGAGTGCAGGGATCGGTTTGGGCGGAGCCACTCTGTGAGTTGGACTGCAGTCTTGCCTAGGTGATT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000025363.7
3UTR TCA 72 bp CTGGAGGGTCCAAACAGCAGATCCCTTGCGGCTACTTaGACACATAGCTTCTCAGCTCTGTTGCTCTCTTCC +
Preference number: 3 (lower is better)
Translates to: LEGPNSRSLAAT*THSFSALLLSS
Trigger: GGAAGAGAGCAACAGAGCTGAGAAGCTATGTGTTCAAGTAGCCGCAAGGGATCTGCTGTTTGGACCCTCCAG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000025363.7
3UTR GCA 72 bp AACACGAACGGTAGACAAAAATCACCTAGGCAAGACTaGAGTCCAACTCACAGAGTGGCTCCGCCCAAACCG +
Preference number: 3 (lower is better)
Translates to: NTNGRQKSPRQD*SPTHRVAPPKP
Trigger: CGGTTTGGGCGGAGCCACTCTGTGAGTTGGACTGCAGTCTTGCCTAGGTGATTTTTGTCTACCGTTCGTGTT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000025363.7
3UTR GCA 72 bp CCTTTACTAATGCCTTCTCCAAACTGTCCTGTGCTCTaGCAACCCCTGCACGAAGTAGCACCCGAAGAACAG +
Preference number: 3 (lower is better)
Translates to: PLLMPSPNCPVL*QPLHEVAPEEQ
Trigger: CTGTTCTTCGGGTGCTACTTCGTGCAGGGGTTGGCAGAGCACAGGACAGTTTGGAGAAGGCATTAGTAAAGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000025363.7
3UTR GCA 72 bp TTGCGGTATTTCACAGTTAGTTCATCAAATCCAGCGTaGTGGAGGGTCCAAACAGCAGATCCCTTGCGGCTA +
Preference number: 3 (lower is better)
Translates to: LRYFTVSSSNPA*WRVQTADPLRL
Trigger: TAGCCGCAAGGGATCTGCTGTTTGGACCCTCCAGCACGCTGGATTTGATGAACTAACTGTGAAATACCGCAA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000025363.7
3UTR CCA 72 bp CGGTATTTCACAGTTAGTTCATCAAATCCAGCGTGCTaGAGGGTCCAAACAGCAGATCCCTTGCGGCTACTT +
Preference number: 3 (lower is better)
Translates to: RYFTVSSSNPAC*RVQTADPLRLL
Trigger: AAGTAGCCGCAAGGGATCTGCTGTTTGGACCCTCCAGCACGCTGGATTTGATGAACTAACTGTGAAATACCG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000025363.7
3UTR CCA 72 bp ACCGATCCCTGCACTCTGACCATACACAACCTACCCTaGGATATTCTGCTCCAGGGACATCTTCTGAAATGT +
Preference number: 3 (lower is better)
Translates to: TDPCTLTIHNLP*DILLQGHLLKC
Trigger: ACATTTCAGAAGATGTCCCTGGAGCAGAATATCCCAGGGTAGGTTGTGTATGGTCAGAGTGCAGGGATCGGT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000025363.7
3UTR GCA 72 bp GGTAGAAAAGTCCCAAAACTCAAGAGTTCTCGAGCTTaGGGTATTTCACAGTTAGTTCATCAAATCCAGCGT +
Preference number: 3 (lower is better)
Translates to: GRKVPKLKSSRA*GISQLVHQIQR
Trigger: ACGCTGGATTTGATGAACTAACTGTGAAATACCGCAAGCTCGAGAACTCTTGAGTTTTGGGACTTTTCTACC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000025363.7
3UTR CCA 72 bp AACACCAATATCTATTACACGCTAACATCAGCACCTTaGGCTTTCGGAACACGAACGGTAGACAAAAATCAC +
Preference number: 3 (lower is better)
Translates to: NTNIYYTLTSAP*AFGTRTVDKNH
Trigger: GTGATTTTTGTCTACCGTTCGTGTTCCGAAAGCCCAAGGTGCTGATGTTAGCGTGTAATAGATATTGGTGTT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000025363.7
CDS-3UTR GCA 90 bp ACTCGATCCTGCTTTCTTCTGATCCGGATCCCAGCGGGCATGGTCTGTTTGGCAAGGGTTGCTGGTTGCTaGCGCCAGACCTCTCCGAAG +
Preference number: 4 (lower is better)
Translates to: TRSCFLLIRIPAGMVCLARVAGC*RQTSPK
Trigger: CTTCGGAGAGGTCTGGCGGCAGCAACCAGCAACCCT...TGCCAAACAGACCATGCCCGCTGGGATCCGGATCAGAAGAAAGCAGGATCGAGT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000025363.7
CDS-3UTR CCA 90 bp GGTTACAGAGCAAATAGGACCCAGCGTGGCATTGAGCCAGATGGTGGAGCGCAGGGTGGCCAGGCCTTGTaGCTTGGAGGAGAAAGCAAC +
Preference number: 4 (lower is better)
Translates to: GYRANRTQRGIEPDGGAQGGQAL*LGGESN
Trigger: GTTGCTTTCTCCTCCAAGCCACAAGGCCTGGCCACC...CTGCGCTCCACCATCTGGCTCAATGCCACGCTGGGTCCTATTTGCTCTGTAACC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000025363.7
CDS-3UTR CCA 90 bp ACTCGATCCTGCTTTCTTCTGATCCGGATCCCAGCGGGCATGGTCTGTTTGGCAGGTTTGTGGATCCAGTaGGAGGGTCAGGGTTGCTGG +
Preference number: 4 (lower is better)
Translates to: TRSCFLLIRIPAGMVCLAGLWIQ*EGQGCW
Trigger: CCAGCAACCCTGACCCTCCCACTGGATCCACAAACC...TGCCAAACAGACCATGCCCGCTGGGATCCGGATCAGAAGAAAGCAGGATCGAGT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000025363.7
CDS-3UTR CCA 90 bp TTCTCCAAACTGTCCTGTGCTCTGCCAACCCCTGCACGAAGTAGCACCCGAAGACCCGTGGGTAGCAGCTaGTTTGTGGATCCAGTGGGA +
Preference number: 4 (lower is better)
Translates to: FSKLSCALPTPARSSTRRPVGSS*FVDPVG
Trigger: TCCCACTGGATCCACAAACCAGCTGCTACCCACGGG...TCTTCGGGTGCTACTTCGTGCAGGGGTTGGCAGAGCACAGGACAGTTTGGAGAA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000025363.7
CDS-3UTR TCA 90 bp CTGCAGTCCAACTCACAGAGTGGCTCCGCCCAAACCGATCCCTGCACTCTGACCAGTCCTTGTATTTCCTaGGGCATGGGTCTCTCTTCT +
Preference number: 4 (lower is better)
Translates to: LQSNSQSGSAQTDPCTLTSPCIS*GMGLSS
Trigger: AGAAGAGAGACCCATGCCTCAGGAAATACAAGGACT...GGTCAGAGTGCAGGGATCGGTTTGGGCGGAGCCACTCTGTGAGTTGGACTGCAG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000025363.7
CDS-3UTR GCA 90 bp GGACCAGGAAGCCCATGGACTTCCTGCAGGCATGGATGCTCAATCTCTTCTGGGAACCAGGGAGGCATTTaGAAGAGGGAGTACGGAACT +
Preference number: 4 (lower is better)
Translates to: GPGSPWTSCRHGCSISSGNQGGI*KREYGT
Trigger: AGTTCCGTACTCCCTCTTGCAAATGCCTCCCTGGTT...CCCAGAAGAGATTGAGCATCCATGCCTGCAGGAAGTCCATGGGCTTCCTGGTCC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000025363.7
3UTR CAA 72 bp AATCCAGCGTGCTGGAGGGTCCAAACAGCAGATCCCTaGCGGCTACTTGAACACATAGCTTCTCAGCTCTGT +
Preference number: 4 (lower is better)
Translates to: NPACWRVQTADP*RLLEHIASQLC
Trigger: ACAGAGCTGAGAAGCTATGTGTTCAAGTAGCCGCAAGGGATCTGCTGTTTGGACCCTCCAGCACGCTGGATT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000025363.7
CDS-3UTR GCA 90 bp CGGTATTTCACAGTTAGTTCATCAAATCCAGCGTGCTGGAGGGTCCAAACAGCACAACGCGGACAACACTaGGGCCAGAAAGAGCTTCAG +
Preference number: 4 (lower is better)
Translates to: RYFTVSSSNPACWRVQTAQRGQH*GQKELQ
Trigger: CTGAAGCTCTTTCTGGCCGCAGTGTTGTCCGCGTTG...TGCTGTTTGGACCCTCCAGCACGCTGGATTTGATGAACTAACTGTGAAATACCG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000025363.7
CDS-3UTR TCA 90 bp AGGAAGCCCATGGACTTCCTGCAGGCATGGATGCTCAATCTCTTCTGGGATTTGAGGAGAAAGCAACTTTaGAAAGGTTCAGATCTGTCC +
Preference number: 4 (lower is better)
Translates to: RKPMDFLQAWMLNLFWDLRRKQL*KGSDLS
Trigger: GGACAGATCTGAACCTTTTCAAAGTTGCTTTCTCCT...CAAATCCCAGAAGAGATTGAGCATCCATGCCTGCAGGAAGTCCATGGGCTTCCT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000025363.7
3UTR CAA 72 bp AAACACCAATATCTATTACACGCTAACATCAGCACCTaGGGCTTTCGGAACACGAACGGTAGACAAAAATCA +
Preference number: 4 (lower is better)
Translates to: KHQYLLHANIST*GFRNTNGRQKS
Trigger: TGATTTTTGTCTACCGTTCGTGTTCCGAAAGCCCAAGGTGCTGATGTTAGCGTGTAATAGATATTGGTGTTT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000025363.7
CDS GCA 90 bp CAGCTGGTTTGTGGATCCAGTGGGAGGGTCAGGGTTGCTGGTTGCTaGCGCCAGACCTCTCCGAAGCCGCTCCAGACTCTCACCGGTCAC +
Preference number: 5 (lower is better)
Translates to: QLVCGSSGRVRVAGC*RQTSPKPLQTLTGH
Trigger: GTGACCGGTGAGAGTCTGGAGCGGCTTCGGAGAGGTCTGGCGGCAGCAACCAGCAACCCTGACCCTCCCACTGGATCCACAAACCAGCTG
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000025363.7
CDS GCA 90 bp CCGTGGGTAGCAGCTGGTTTGTGGATCCAGTGGGAGGGTCAGGGTTaGTGGTTGCTGCCGCCAGACCTCTCCGAAGCCGCTCCAGACTCT +
Preference number: 5 (lower is better)
Translates to: PWVAAGLWIQWEGQG*WLLPPDLSEAAPDS
Trigger: AGAGTCTGGAGCGGCTTCGGAGAGGTCTGGCGGCAGCAACCAGCAACCCTGACCCTCCCACTGGATCCACAAACCAGCTGCTACCCACGG
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000025363.7
CDS CCA 90 bp TGGGTAGCAGCTGGTTTGTGGATCCAGTGGGAGGGTCAGGGTTGCTaGTTGCTGCCGCCAGACCTCTCCGAAGCCGCTCCAGACTCTCAC +
Preference number: 5 (lower is better)
Translates to: WVAAGLWIQWEGQGC*LLPPDLSEAAPDSH
Trigger: GTGAGAGTCTGGAGCGGCTTCGGAGAGGTCTGGCGGCAGCAACCAGCAACCCTGACCCTCCCACTGGATCCACAAACCAGCTGCTACCCA
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000025363.7
CDS CCA 90 bp GAGCACGATCACCTCCCGTGGGTAGCAGCTGGTTTGTGGATCCAGTaGGAGGGTCAGGGTTGCTGGTTGCTGCCGCCAGACCTCTCCGAA +
Preference number: 5 (lower is better)
Translates to: EHDHLPWVAAGLWIQ*EGQGCWLLPPDLSE
Trigger: TTCGGAGAGGTCTGGCGGCAGCAACCAGCAACCCTGACCCTCCCACTGGATCCACAAACCAGCTGCTACCCACGGGAGGTGATCGTGCTC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000025363.7
CDS CCA 90 bp CTGTCCCTTCCAAGTCCTGGACCCCCTGAGCACGATCACCTCCCGTaGGTAGCAGCTGGTTTGTGGATCCAGTGGGAGGGTCAGGGTTGC +
Preference number: 5 (lower is better)
Translates to: LSLPSPGPPEHDHLP*VAAGLWIQWEGQGC
Trigger: GCAACCCTGACCCTCCCACTGGATCCACAAACCAGCTGCTACCCACGGGAGGTGATCGTGCTCAGGGGGTCCAGGACTTGGAAGGGACAG
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000025363.7
CDS GCA 90 bp GAGTCAGCCCATGACACCTGTGTCCGTGGTAACCAGGGAGGCATTTaGAAGAGGGAGTACGGAACTCCTGCAGGTATCTGCACTCCCCGT +
Preference number: 5 (lower is better)
Translates to: ESAHDTCVRGNQGGI*KREYGTPAGICTPR
Trigger: ACGGGGAGTGCAGATACCTGCAGGAGTTCCGTACTCCCTCTTGCAAATGCCTCCCTGGTTACCACGGACACAGGTGTCATGGGCTGACTC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000025363.7
CDS-3UTR CAA 90 bp TCTCGAGCTTGCGGTATTTCACAGTTAGTTCATCAAATCCAGCGTGCTGGAGGGGTGGGAGGGTCAGGGTaGCTGGTTGCTGCCGCCAGA +
Preference number: 5 (lower is better)
Translates to: SRACGISQLVHQIQRAGGVGGSG*LVAAAR
Trigger: TCTGGCGGCAGCAACCAGCAACCCTGACCCTCCCAC...CCCTCCAGCACGCTGGATTTGATGAACTAACTGTGAAATACCGCAAGCTCGAGA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000025363.7
CDS TCA 90 bp ACTTTGAAAAGGTTCAGATCTGTCCCTTCCAAGTCCTGGACCCCCTaGGCACGATCACCTCCCGTGGGTAGCAGCTGGTTTGTGGATCCA +
Preference number: 5 (lower is better)
Translates to: TLKRFRSVPSKSWTP*ARSPPVGSSWFVDP
Trigger: TGGATCCACAAACCAGCTGCTACCCACGGGAGGTGATCGTGCTCAGGGGGTCCAGGACTTGGAAGGGACAGATCTGAACCTTTTCAAAGT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000025363.7
CDS-3UTR CAA 90 bp AGGAAGCCCATGGACTTCCTGCAGGCATGGATGCTCAATCTCTTCTGGGATTTGTTCCCATTCCTTTCTTaGCTTGGGGTGGCCAGGCCT +
Preference number: 5 (lower is better)
Translates to: RKPMDFLQAWMLNLFWDLFPFLS*LGVARP
Trigger: AGGCCTGGCCACCCCAAGCAAAGAAAGGAATGGGAA...CAAATCCCAGAAGAGATTGAGCATCCATGCCTGCAGGAAGTCCATGGGCTTCCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000025363.7
CDS CCA 90 bp CAGACGGACGACAGTACTACAGCCACCACAGCCAAGACTGTAGTGTaGTCATATGTGTATAGGGGATTCTCCACTGGTAGAGTCAGCCCA +
Preference number: 5 (lower is better)
Translates to: QTDDSTTATTAKTVV*SYVYRGFSTGRVSP
Trigger: TGGGCTGACTCTACCAGTGGAGAATCCCCTATACACATATGACCACACTACAGTCTTGGCTGTGGTGGCTGTAGTACTGTCGTCCGTCTG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000025363.7
CDS-3UTR CAA 90 bp AAATCCTGGAGCATATGGAAACTAGCTGACACTCTAATCCAGAAGCTAAGTGTTTGGGTAGCAGCTGGTTaGTGGATCCAGTGGGAGGGT +
Preference number: 5 (lower is better)
Translates to: KSWSIWKLADTLIQKLSVWVAAG*WIQWEG
Trigger: ACCCTCCCACTGGATCCACAAACCAGCTGCTACCCA...AACACTTAGCTTCTGGATTAGAGTGTCAGCTAGTTTCCATATGCTCCAGGATTT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000025363.7
CDS-3UTR CAA 90 bp TCTCGAGCTTGCGGTATTTCACAGTTAGTTCATCAAATCCAGCGTGCTGGAGGGGAGGAGAAAGCAACTTaGAAAAGGTTCAGATCTGTC +
Preference number: 5 (lower is better)
Translates to: SRACGISQLVHQIQRAGGEEKAT*KRFRSV
Trigger: GACAGATCTGAACCTTTTCAAAGTTGCTTTCTCCTC...CCCTCCAGCACGCTGGATTTGATGAACTAACTGTGAAATACCGCAAGCTCGAGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000025363.7
CDS CAA 90 bp CCCGTGGGTAGCAGCTGGTTTGTGGATCCAGTGGGAGGGTCAGGGTaGCTGGTTGCTGCCGCCAGACCTCTCCGAAGCCGCTCCAGACTC +
Preference number: 6 (lower is better)
Translates to: PVGSSWFVDPVGGSG*LVAAARPLRSRSRL
Trigger: GAGTCTGGAGCGGCTTCGGAGAGGTCTGGCGGCAGCAACCAGCAACCCTGACCCTCCCACTGGATCCACAAACCAGCTGCTACCCACGGG
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000025363.7
CDS CAA 90 bp CCTGGACCCCCTGAGCACGATCACCTCCCGTGGGTAGCAGCTGGTTaGTGGATCCAGTGGGAGGGTCAGGGTTGCTGGTTGCTGCCGCCA +
Preference number: 6 (lower is better)
Translates to: PGPPEHDHLPWVAAG*WIQWEGQGCWLLPP
Trigger: TGGCGGCAGCAACCAGCAACCCTGACCCTCCCACTGGATCCACAAACCAGCTGCTACCCACGGGAGGTGATCGTGCTCAGGGGGTCCAGG
64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000025363.7
CDS GCA 72 bp TGTGGATCCAGTGGGAGGGTCAGGGTTGCTGGTTGCTaGCGCCAGACCTCTCCGAAGCCGCTCCAGACTCTC +
Preference number: 6 (lower is better)
Translates to: CGSSGRVRVAGC*RQTSPKPLQTL
Trigger: GAGAGTCTGGAGCGGCTTCGGAGAGGTCTGGCGGCAGCAACCAGCAACCCTGACCCTCCCACTGGATCCACA
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000025363.7
CDS GCA 72 bp GCAGCTGGTTTGTGGATCCAGTGGGAGGGTCAGGGTTaGTGGTTGCTGCCGCCAGACCTCTCCGAAGCCGCT +
Preference number: 6 (lower is better)
Translates to: AAGLWIQWEGQG*WLLPPDLSEAA
Trigger: AGCGGCTTCGGAGAGGTCTGGCGGCAGCAACCAGCAACCCTGACCCTCCCACTGGATCCACAAACCAGCTGC
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000025363.7
CDS CCA 72 bp GCTGGTTTGTGGATCCAGTGGGAGGGTCAGGGTTGCTaGTTGCTGCCGCCAGACCTCTCCGAAGCCGCTCCA +
Preference number: 6 (lower is better)
Translates to: AGLWIQWEGQGC*LLPPDLSEAAP
Trigger: TGGAGCGGCTTCGGAGAGGTCTGGCGGCAGCAACCAGCAACCCTGACCCTCCCACTGGATCCACAAACCAGC
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000025363.7
CDS CCA 72 bp CACCTCCCGTGGGTAGCAGCTGGTTTGTGGATCCAGTaGGAGGGTCAGGGTTGCTGGTTGCTGCCGCCAGAC +
Preference number: 6 (lower is better)
Translates to: HLPWVAAGLWIQ*EGQGCWLLPPD
Trigger: GTCTGGCGGCAGCAACCAGCAACCCTGACCCTCCCACTGGATCCACAAACCAGCTGCTACCCACGGGAGGTG
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000025363.7
CDS CAA 72 bp GGTTTGTGGATCCAGTGGGAGGGTCAGGGTTGCTGGTaGCTGCCGCCAGACCTCTCCGAAGCCGCTCCAGAC +
Preference number: 6 (lower is better)
Translates to: GLWIQWEGQGCW*LPPDLSEAAPD
Trigger: GTCTGGAGCGGCTTCGGAGAGGTCTGGCGGCAGCAACCAGCAACCCTGACCCTCCCACTGGATCCACAAACC
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000025363.7
CDS CAA 72 bp AGCAGCTGGTTTGTGGATCCAGTGGGAGGGTCAGGGTaGCTGGTTGCTGCCGCCAGACCTCTCCGAAGCCGC +
Preference number: 6 (lower is better)
Translates to: SSWFVDPVGGSG*LVAAARPLRSR
Trigger: GCGGCTTCGGAGAGGTCTGGCGGCAGCAACCAGCAACCCTGACCCTCCCACTGGATCCACAAACCAGCTGCT
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000025363.7
CDS CAA 90 bp GTAGCAGCTGGTTTGTGGATCCAGTGGGAGGGTCAGGGTTGCTGGTaGCTGCCGCCAGACCTCTCCGAAGCCGCTCCAGACTCTCACCGG +
Preference number: 6 (lower is better)
Translates to: VAAGLWIQWEGQGCW*LPPDLSEAAPDSHR
Trigger: CCGGTGAGAGTCTGGAGCGGCTTCGGAGAGGTCTGGCGGCAGCAACCAGCAACCCTGACCCTCCCACTGGATCCACAAACCAGCTGCTAC
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000025363.7
CDS GCA 72 bp GTTTGTGGATCCAGTGGGAGGGTCAGGGTTGCTGGTTaGTGCCGCCAGACCTCTCCGAAGCCGCTCCAGACT +
Preference number: 6 (lower is better)
Translates to: VCGSSGRVRVAG*CRQTSPKPLQT
Trigger: AGTCTGGAGCGGCTTCGGAGAGGTCTGGCGGCAGCAACCAGCAACCCTGACCCTCCCACTGGATCCACAAAC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000025363.7
CDS CCA 72 bp CCAAGTCCTGGACCCCCTGAGCACGATCACCTCCCGTaGGTAGCAGCTGGTTTGTGGATCCAGTGGGAGGGT +
Preference number: 6 (lower is better)
Translates to: PSPGPPEHDHLP*VAAGLWIQWEG
Trigger: ACCCTCCCACTGGATCCACAAACCAGCTGCTACCCACGGGAGGTGATCGTGCTCAGGGGGTCCAGGACTTGG
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000025363.7
CDS GCA 72 bp CTCCAGACTCTCACCGGTCACCAACGCGGACAACACTaGGGCCAGAAAGAGCTTCAGCATCACCGACGGCAG +
Preference number: 6 (lower is better)
Translates to: LQTLTGHQRGQH*GQKELQHHRRQ
Trigger: CTGCCGTCGGTGATGCTGAAGCTCTTTCTGGCCGCAGTGTTGTCCGCGTTGGTGACCGGTGAGAGTCTGGAG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000025363.7
CDS CAA 72 bp CCTGAGCACGATCACCTCCCGTGGGTAGCAGCTGGTTaGTGGATCCAGTGGGAGGGTCAGGGTTGCTGGTTG +
Preference number: 6 (lower is better)
Translates to: PEHDHLPWVAAG*WIQWEGQGCWL
Trigger: CAACCAGCAACCCTGACCCTCCCACTGGATCCACAAACCAGCTGCTACCCACGGGAGGTGATCGTGCTCAGG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000025363.7
CDS TCA 72 bp AGGTTCAGATCTGTCCCTTCCAAGTCCTGGACCCCCTaGGCACGATCACCTCCCGTGGGTAGCAGCTGGTTT +
Preference number: 6 (lower is better)
Translates to: RFRSVPSKSWTP*ARSPPVGSSWF
Trigger: AAACCAGCTGCTACCCACGGGAGGTGATCGTGCTCAGGGGGTCCAGGACTTGGAAGGGACAGATCTGAACCT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000025363.7
CDS TCA 72 bp TGCACTCCCCGTGGATGCAGTAGTCCTTGTATTTCCTaGGGCATGGGTCTCTCTTCTTCCCTAACCCCTTTC +
Preference number: 6 (lower is better)
Translates to: CTPRGCSSPCIS*GMGLSSSLTPF
Trigger: GAAAGGGGTTAGGGAAGAAGAGAGACCCATGCCTCAGGAAATACAAGGACTACTGCATCCACGGGGAGTGCA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000025363.7
CDS GCA 72 bp ATTTGCAAGAGGGAGTACGGAACTCCTGCAGGTATCTaGACTCCCCGTGGATGCAGTAGTCCTTGTATTTCC +
Preference number: 6 (lower is better)
Translates to: ICKREYGTPAGI*TPRGCSSPCIS
Trigger: GGAAATACAAGGACTACTGCATCCACGGGGAGTGCAGATACCTGCAGGAGTTCCGTACTCCCTCTTGCAAAT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000025363.7
CDS GCA 72 bp CCTTTCCTTTCTTCTTCTTTTTCCCATTCCTTTCTTTaGTTGGGGTGGCCAGGCCTTGTGGCTTGGAGGAGA +
Preference number: 6 (lower is better)
Translates to: PFLSSSFSHSFL*LGWPGLVAWRR
Trigger: TCTCCTCCAAGCCACAAGGCCTGGCCACCCCAAGCAAAGAAAGGAATGGGAAAAAGAAGAAGAAAGGAAAGG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000025363.7
CDS CCA 72 bp GACAGTACTACAGCCACCACAGCCAAGACTGTAGTGTaGTCATATGTGTATAGGGGATTCTCCACTGGTAGA +
Preference number: 6 (lower is better)
Translates to: DSTTATTAKTVV*SYVYRGFSTGR
Trigger: TCTACCAGTGGAGAATCCCCTATACACATATGACCACACTACAGTCTTGGCTGTGGTGGCTGTAGTACTGTC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000025363.7