Pregenerated sensors for HBB-Y (Mus musculus)

Ensembl gene IDs: ENSMUSG00000052187

Ensembl transcript IDs: ENSMUST00000033229.5

Found 9 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type	Sensor	Details
CDS-3UTR CCA 90 bp	GGAACAGTCCAGTATTCATGTGCAGAAAGGAGGCATAGCGGACACACAGGATTGTGTGGGACAGCGCAGTaGCCACCCCAGCCACCAGCT	+
Preference number: 4 (lower is better) Translates to: GTVQYSCAERRHSGHTGLCGTAQ*PPQPPA Trigger: AGCTGGTGGCTGGGGTGGCCACTGCGCTGTCCCACA...CAATCCTGTGTGTCCGCTATGCCTCCTTTCTGCACATGAATACTGGACTGTTCC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033229.5
CDS-3UTR GCA 90 bp	GAACAGTCCAGTATTCATGTGCAGAAAGGAGGCATAGCGGACACACAGGATTGCTTCTGCCAGGCAGCCTaGATCTCAGCTGTGAATTCA	+
Preference number: 4 (lower is better) Translates to: EQSSIHVQKGGIADTQDCFCQAA*ISAVNS Trigger: TGAATTCACAGCTGAGATGCAGGCTGCCTGGCAGAA...GCAATCCTGTGTGTCCGCTATGCCTCCTTTCTGCACATGAATACTGGACTGTTC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033229.5
CDS-3UTR TCA 90 bp	GCTTTCAAGGAACAGTCCAGTATTCATGTGCAGAAAGGAGGCATAGCGGACACACAACCTCTTCAACATTaGCCTTACTCCACAGGCCAT	+
Preference number: 4 (lower is better) Translates to: AFKEQSSIHVQKGGIADTQPLQH*PYSTGH Trigger: ATGGCCTGTGGAGTAAGGTCAATGTTGAAGAGGTTG...TGTGTCCGCTATGCCTCCTTTCTGCACATGAATACTGGACTGTTCCTTGAAAGC 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033229.5
CDS-3UTR TCA 90 bp	GGAAGGATGATCTTTATTAAACATGATGTGCTTTCAAGGAACAGTCCAGTATTCCCTGCATCTCAGCTGTaGATTCATTGCCGAAGTGAC	+
Preference number: 4 (lower is better) Translates to: GRMIFIKHDVLSRNSPVFPASQL*IHCRSD Trigger: GTCACTTCGGCAATGAATTCACAGCTGAGATGCAGG...GAATACTGGACTGTTCCTTGAAAGCACATCATGTTTAATAAAGATCATCCTTCC 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033229.5
CDS-3UTR TCA 90 bp	CCAGGAAGGATGATCTTTATTAAACATGATGTGCTTTCAAGGAACAGTCCAGTAAATTCATTGCCGAAGTaGCTAGCCAAAACAATCACC	+
Preference number: 4 (lower is better) Translates to: PGRMIFIKHDVLSRNSPVNSLPK*LAKTIT Trigger: GGTGATTGTTTTGGCTAGTCACTTCGGCAATGAATT...TACTGGACTGTTCCTTGAAAGCACATCATGTTTAATAAAGATCATCCTTCCTGG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033229.5
CDS-3UTR CAA 90 bp	ATGATCTTTATTAAACATGATGTGCTTTCAAGGAACAGTCCAGTATTCATGTGCCCAACCTCTTCAACATaGACCTTACTCCACAGGCCA	+
Preference number: 5 (lower is better) Translates to: MIFIKHDVLSRNSPVFMCPTSST*TLLHRP Trigger: TGGCCTGTGGAGTAAGGTCAATGTTGAAGAGGTTGG...GCACATGAATACTGGACTGTTCCTTGAAAGCACATCATGTTTAATAAAGATCAT 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033229.5
CDS-3UTR CAA 90 bp	ATGATCTTTATTAAACATGATGTGCTTTCAAGGAACAGTCCAGTATTCATGTGCTTACTCCACAGGCCATaGATGAGGGTCTTTTCCTCA	+
Preference number: 5 (lower is better) Translates to: MIFIKHDVLSRNSPVFMCLLHRP*MRVFSS Trigger: TGAGGAAAAGACCCTCATCAATGGCCTGTGGAGTAA...GCACATGAATACTGGACTGTTCCTTGAAAGCACATCATGTTTAATAAAGATCAT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033229.5
CDS-3UTR CAA 90 bp	CCAGGAAGGATGATCTTTATTAAACATGATGTGCTTTCAAGGAACAGTCCAGTAACATTACCCAAGAGTTaGAAGTTCTCAGGATCCACA	+
Preference number: 5 (lower is better) Translates to: PGRMIFIKHDVLSRNSPVTLPKS*KFSGST Trigger: TGTGGATCCTGAGAACTTCAAACTCTTGGGTAATGT...TACTGGACTGTTCCTTGAAAGCACATCATGTTTAATAAAGATCATCCTTCCTGG 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033229.5
CDS CAA 72 bp	CCAACCTCTTCAACATTGACCTTACTCCACAGGCCATaGATGAGGGTCTTTTCCTCAGCAGTAAAGTTCACC	+
Preference number: 6 (lower is better) Translates to: PTSSTLTLLHRP*MRVFSSAVKFT Trigger: GGTGAACTTTACTGCTGAGGAAAAGACCCTCATCAATGGCCTGTGGAGTAAGGTCAATGTTGAAGAGGTTGG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033229.5