Pregenerated sensors for HBB-BT (Mus musculus)

Ensembl gene IDs: ENSMUSG00000073940

Ensembl transcript IDs: ENSMUST00000098192.4

Found 5 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type	Sensor	Details
CDS CCA 90 bp	TGGAAGGCAGCCTGTGCAGCGGGGGTGAAATCCTTGCCCAGGTGGTaGCCCAGCACAATCACGATCATATTGCCCAGGAGCCTGAAGTTC	+
Preference number: 5 (lower is better) Translates to: WKAACAAGVKSLPRW*PSTITIILPRSLKF Trigger: GAACTTCAGGCTCCTGGGCAATATGATCGTGATTGTGCTGGGCCACCACCTGGGCAAGGATTTCACCCCCGCTGCACAGGCTGCCTTCCA 59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000098192.4
CDS CCA 90 bp	TTCTGGAAGGCAGCCTGTGCAGCGGGGGTGAAATCCTTGCCCAGGTaGTGGCCCAGCACAATCACGATCATATTGCCCAGGAGCCTGAAG	+
Preference number: 5 (lower is better) Translates to: FWKAACAAGVKSLPR*WPSTITIILPRSLK Trigger: CTTCAGGCTCCTGGGCAATATGATCGTGATTGTGCTGGGCCACCACCTGGGCAAGGATTTCACCCCCGCTGCACAGGCTGCCTTCCAGAA 59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000098192.4
CDS CAA 90 bp	GCCACCACCTTCTGGAAGGCAGCCTGTGCAGCGGGGGTGAAATCCTaGCCCAGGTGGTGGCCCAGCACAATCACGATCATATTGCCCAGG	+
Preference number: 6 (lower is better) Translates to: ATTFWKAACAAGVKS*PRWWPSTITIILPR Trigger: CCTGGGCAATATGATCGTGATTGTGCTGGGCCACCACCTGGGCAAGGATTTCACCCCCGCTGCACAGGCTGCCTTCCAGAAGGTGGTGGC 61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000098192.4
CDS CCA 72 bp	GCCTGTGCAGCGGGGGTGAAATCCTTGCCCAGGTGGTaGCCCAGCACAATCACGATCATATTGCCCAGGAGC	+
Preference number: 6 (lower is better) Translates to: ACAAGVKSLPRW*PSTITIILPRS Trigger: GCTCCTGGGCAATATGATCGTGATTGTGCTGGGCCACCACCTGGGCAAGGATTTCACCCCCGCTGCACAGGC 61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000098192.4
CDS CCA 72 bp	GCAGCCTGTGCAGCGGGGGTGAAATCCTTGCCCAGGTaGTGGCCCAGCACAATCACGATCATATTGCCCAGG	+
Preference number: 6 (lower is better) Translates to: AACAAGVKSLPR*WPSTITIILPR Trigger: CCTGGGCAATATGATCGTGATTGTGCTGGGCCACCACCTGGGCAAGGATTTCACCCCCGCTGCACAGGCTGC 61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000098192.4

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