Pregenerated sensors for HBB-BH2 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000078621Ensembl transcript IDs: ENSMUST00000106866.3
Found 10 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS CCA 90 bp | TGGCAGCACAGAAGGAGAAGTCTCCAAAGTGGTCAAAGTATCTCTTaGTGTGTGGATAAACCGTCAGTATTCTTTCCAGGGACTCAACAC | + |
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Preference number: 5 (lower is better) Translates to: WQHRRRSLQSGQSIS*CVDKPSVFFPGTQH Trigger: GTGTTGAGTCCCTGGAAAGAATACTGACGGTTTATCCACACACCAAGAGATACTTTGACCACTTTGGAGACTTCTCCTTCTGTGCTGCCA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000106866.3 |
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| CDS CCA 90 bp | ACAGAAGGAGAAGTCTCCAAAGTGGTCAAAGTATCTCTTGGTGTGTaGATAAACCGTCAGTATTCTTTCCAGGGACTCAACACCAAGTTC | + |
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Preference number: 5 (lower is better) Translates to: TEGEVSKVVKVSLGV*INRQYSFQGLNTKF Trigger: GAACTTGGTGTTGAGTCCCTGGAAAGAATACTGACGGTTTATCCACACACCAAGAGATACTTTGACCACTTTGGAGACTTCTCCTTCTGT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000106866.3 |
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| CDS CCA 90 bp | CTATCATCTTCTTACCAAGAGCCTTCAGCTTGTGGTTATCTTCAGTaGCAGCACAGAAGGAGAAGTCTCCAAAGTGGTCAAAGTATCTCT | + |
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Preference number: 5 (lower is better) Translates to: LSSSYQEPSACGYLQ*QHRRRSLQSGQSIS Trigger: AGAGATACTTTGACCACTTTGGAGACTTCTCCTTCTGTGCTGCCACTGAAGATAACCACAAGCTGAAGGCTCTTGGTAAGAAGATGATAG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000106866.3 |
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| CDS CCA 90 bp | TCACTAAAGGATTCTATCATCTTCTTACCAAGAGCCTTCAGCTTGTaGTTATCTTCAGTGGCAGCACAGAAGGAGAAGTCTCCAAAGTGG | + |
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Preference number: 5 (lower is better) Translates to: SLKDSIIFLPRAFSL*LSSVAAQKEKSPKW Trigger: CCACTTTGGAGACTTCTCCTTCTGTGCTGCCACTGAAGATAACCACAAGCTGAAGGCTCTTGGTAAGAAGATGATAGAATCCTTTAGTGA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000106866.3 |
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| CDS GCA 72 bp | CAGTATTCTTTCCAGGGACTCAACACCAAGTTCTTCTaGCTTCACCTTAGTCCACGTGGCAGTGATGGCTGC | + |
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Preference number: 6 (lower is better) Translates to: QYSFQGLNTKFF*LHLSPRGSDGC Trigger: GCAGCCATCACTGCCACGTGGACTAAGGTGAAGGCAGAAGAACTTGGTGTTGAGTCCCTGGAAAGAATACTG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000106866.3 |
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| CDS CAA 90 bp | TCCTCACTAAAGGATTCTATCATCTTCTTACCAAGAGCCTTCAGCTaGTGGTTATCTTCAGTGGCAGCACAGAAGGAGAAGTCTCCAAAG | + |
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Preference number: 6 (lower is better) Translates to: SSLKDSIIFLPRAFS*WLSSVAAQKEKSPK Trigger: CTTTGGAGACTTCTCCTTCTGTGCTGCCACTGAAGATAACCACAAGCTGAAGGCTCTTGGTAAGAAGATGATAGAATCCTTTAGTGAGGA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000106866.3 |
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| CDS CCA 72 bp | GAAGTCTCCAAAGTGGTCAAAGTATCTCTTGGTGTGTaGATAAACCGTCAGTATTCTTTCCAGGGACTCAAC | + |
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Preference number: 6 (lower is better) Translates to: EVSKVVKVSLGV*INRQYSFQGLN Trigger: GTTGAGTCCCTGGAAAGAATACTGACGGTTTATCCACACACCAAGAGATACTTTGACCACTTTGGAGACTTC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000106866.3 |
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| CDS CCA 72 bp | AGAAGGAGAAGTCTCCAAAGTGGTCAAAGTATCTCTTaGTGTGTGGATAAACCGTCAGTATTCTTTCCAGGG | + |
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Preference number: 6 (lower is better) Translates to: RRRSLQSGQSIS*CVDKPSVFFPG Trigger: CCCTGGAAAGAATACTGACGGTTTATCCACACACCAAGAGATACTTTGACCACTTTGGAGACTTCTCCTTCT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000106866.3 |
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| CDS CCA 72 bp | GATTCTATCATCTTCTTACCAAGAGCCTTCAGCTTGTaGTTATCTTCAGTGGCAGCACAGAAGGAGAAGTCT | + |
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Preference number: 6 (lower is better) Translates to: DSIIFLPRAFSL*LSSVAAQKEKS Trigger: AGACTTCTCCTTCTGTGCTGCCACTGAAGATAACCACAAGCTGAAGGCTCTTGGTAAGAAGATGATAGAATC 44% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000106866.3 |
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| CDS CAA 72 bp | TTCTCAAAAGCAGCTTGCAGTGCTGAAGTAAAGCTGTaGCCAAAGTGTGGAGACATCACAATCACTATCATG | + |
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Preference number: 6 (lower is better) Translates to: FSKAACSAEVKL*PKCGDITITIM Trigger: CATGATAGTGATTGTGATGTCTCCACACTTTGGCAACAGCTTTACTTCAGCACTGCAAGCTGCTTTTGAGAA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000106866.3 |
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