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Pregenerated sensors for HBA-X (Mus musculus)

Ensembl gene IDs: ENSMUSG00000055609

Ensembl transcript IDs: ENSMUST00000020531.9, ENSMUST00000145569.2

Found 20 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
CDS-3UTR TCA 90 bp TTCAATAAAGGGGAGGAGAGGGATCATAGCTGGTCATGGGGGTCGTGGCGGTGGCCAATGGGCTCGGCCTaGGCAGCCATCTTCTCCCAC +
Preference number: 4 (lower is better)
Translates to: FNKGEERDHSWSWGSWRWPMGSA*AAIFSH
Trigger: GTGGGAGAAGATGGCTGCTCAGGCCGAGCCCATTGG...CCACCGCCACGACCCCCATGACCAGCTATGATCCCTCTCCTCCCCTTTATTGAA
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000020531.9
CDS-3UTR GCA 90 bp GGTTCAATAAAGGGGAGGAGAGGGATCATAGCTGGTCATGGGGGTCGTGGCGGTAGCAGCTTGTCTGCCTaGCTGGATCCCCTCCTCACA +
Preference number: 4 (lower is better)
Translates to: GSIKGRRGIIAGHGGRGGSSLSA*LDPLLT
Trigger: TGTGAGGAGGGGATCCAGGCAGGCAGACAAGCTGCT...ACCGCCACGACCCCCATGACCAGCTATGATCCCTCTCCTCCCCTTTATTGAACC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000145569.2
CDS-3UTR TCA 90 bp GAGGGTTCAATAAAGGGGAGGAGAGGGATCATAGCTGGTCATGGGGGTCGTGGCAGCTGCAGAAGAGCCTaGGGAGCCACATGGAAGACT +
Preference number: 4 (lower is better)
Translates to: EGSIKGRRGIIAGHGGRGSCRRA*GATWKT
Trigger: AGTCTTCCATGTGGCTCCTCAGGCTCTTCTGCAGCT...GCCACGACCCCCATGACCAGCTATGATCCCTCTCCTCCCCTTTATTGAACCCTC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000145569.2
CDS-3UTR GCA 90 bp GGTTCAATAAAGGGGAGGAGAGGGATCATAGCTGGTCATGGGGGTCGTGGCGGTTCGTCTGGGGGTAGCTaGAGAAGAGCCTCTCTAGAG +
Preference number: 4 (lower is better)
Translates to: GSIKGRRGIIAGHGGRGGSSGGS*RRASLE
Trigger: CTCTAGAGAGGCTCTTCTGCAGCTACCCCCAGACGA...ACCGCCACGACCCCCATGACCAGCTATGATCCCTCTCCTCCCCTTTATTGAACC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENSMUST00000020531.9
CDS-3UTR CCA 90 bp CTGAGGGAGGGTTCAATAAAGGGGAGGAGAGGGATCATAGCTGGTCATGGGGGTGCTTGTCTGCCTGCCTaGATCCCCTCCTCACAAGCT +
Preference number: 4 (lower is better)
Translates to: LREGSIKGRRGIIAGHGGACLPA*IPSSQA
Trigger: AGCTTGTGAGGAGGGGATCCAGGCAGGCAGACAAGC...ACCCCCATGACCAGCTATGATCCCTCTCCTCCCCTTTATTGAACCCTCCCTCAG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000145569.2
CDS-3UTR TCA 90 bp TTCAATAAAGGGGAGGAGAGGGATCATAGCTGGTCATGGGGGTCGTGGCGGTGGCCTCCTCACAAGCTTTaGTCTCTCAGTCCTCTCCAC +
Preference number: 4 (lower is better)
Translates to: FNKGEERDHSWSWGSWRWPPHKL*SLSPLH
Trigger: GTGGAGAGGACTGAGAGATCAAAGCTTGTGAGGAGG...CCACCGCCACGACCCCCATGACCAGCTATGATCCCTCTCCTCCCCTTTATTGAA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000145569.2
CDS GCA 90 bp AAGAGCCTGAGGAGCCACATGGAAGACTCTGGTGAGCTCTGTGAATaGCAGCCCACCTCCTTTAGCAGCTTGTCTGCCTGCCTGGATCCC +
Preference number: 5 (lower is better)
Translates to: KSLRSHMEDSGELCE*QPTSFSSLSACLDP
Trigger: GGGATCCAGGCAGGCAGACAAGCTGCTAAAGGAGGTGGGCTGGCATTCACAGAGCTCACCAGAGTCTTCCATGTGGCTCCTCAGGCTCTT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000145569.2
CDS-3UTR CAA 90 bp GACCTGAGGGAGGGTTCAATAAAGGGGAGGAGAGGGATCATAGCTGGTCATGGGACCTCCTTTAGCAGCTaGTCTGCCTGCCTGGATCCC +
Preference number: 5 (lower is better)
Translates to: DLREGSIKGRRGIIAGHGTSFSS*SACLDP
Trigger: GGGATCCAGGCAGGCAGACAAGCTGCTAAAGGAGGT...CCCATGACCAGCTATGATCCCTCTCCTCCCCTTTATTGAACCCTCCCTCAGGTC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000145569.2
CDS CCA 90 bp TCTGTGAATGCCAGCCCACCTCCTTTAGCAGCTTGTCTGCCTGCCTaGATCCCCTCCTCACAAGCTTTGATCTCTCAGTCCTCTCCACGT +
Preference number: 5 (lower is better)
Translates to: SVNASPPPLAACLPA*IPSSQALISQSSPR
Trigger: ACGTGGAGAGGACTGAGAGATCAAAGCTTGTGAGGAGGGGATCCAGGCAGGCAGACAAGCTGCTAAAGGAGGTGGGCTGGCATTCACAGA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000145569.2
CDS-3UTR CAA 90 bp CTGAGGGAGGGTTCAATAAAGGGGAGGAGAGGGATCATAGCTGGTCATGGGGGTAGGATAGACATGAACTaGTCCCAGGCTTCGTGGACC +
Preference number: 5 (lower is better)
Translates to: LREGSIKGRRGIIAGHGGRIDMN*SQASWT
Trigger: GGTCCACGAAGCCTGGGACAAGTTCATGTCTATCCT...ACCCCCATGACCAGCTATGATCCCTCTCCTCCCCTTTATTGAACCCTCCCTCAG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000020531.9
ENSMUST00000145569.2
CDS-3UTR CAA 90 bp GACCTGAGGGAGGGTTCAATAAAGGGGAGGAGAGGGATCATAGCTGGTCATGGGAGGATAGACATGAACTaGTCCCAGGCTTCGTGGACC +
Preference number: 5 (lower is better)
Translates to: DLREGSIKGRRGIIAGHGRIDMN*SQASWT
Trigger: GGTCCACGAAGCCTGGGACAAGTTCATGTCTATCCT...CCCATGACCAGCTATGATCCCTCTCCTCCCCTTTATTGAACCCTCCCTCAGGTC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000020531.9
ENSMUST00000145569.2
CDS CCA 72 bp AGCTGCAGAAGAGCCTCTCTAGAGTCTCAGTGCCAATaGGCTCGGCCTGAGCAGCCATCTTCTCCCACATGG +
Preference number: 6 (lower is better)
Translates to: SCRRASLESQCQ*ARPEQPSSPTW
Trigger: CCATGTGGGAGAAGATGGCTGCTCAGGCCGAGCCCATTGGCACTGAGACTCTAGAGAGGCTCTTCTGCAGCT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000020531.9
CDS TCA 72 bp CTTGTCTGCCTGCCTGGATCCCCTCCTCACAAGCTTTaGTCTCTCAGTCCTCTCCACGTTGTCCTCTCTGCC +
Preference number: 6 (lower is better)
Translates to: LVCLPGSPPHKL*SLSPLHVVLSA
Trigger: GGCAGAGAGGACAACGTGGAGAGGACTGAGAGATCAAAGCTTGTGAGGAGGGGATCCAGGCAGGCAGACAAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000145569.2
CDS TCA 72 bp AGTAGGTCTTCGTCTGGGGGTAGCTGCAGAAGAGCCTaGGGAGCCACATGGAAGACTCTGGTGAGCTCTGTG +
Preference number: 6 (lower is better)
Translates to: SRSSSGGSCRRA*GATWKTLVSSV
Trigger: CACAGAGCTCACCAGAGTCTTCCATGTGGCTCCTCAGGCTCTTCTGCAGCTACCCCCAGACGAAGACCTACT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000145569.2
CDS GCA 72 bp AGGAGCCACATGGAAGACTCTGGTGAGCTCTGTGAATaGCAGCCCACCTCCTTTAGCAGCTTGTCTGCCTGC +
Preference number: 6 (lower is better)
Translates to: RSHMEDSGELCE*QPTSFSSLSAC
Trigger: GCAGGCAGACAAGCTGCTAAAGGAGGTGGGCTGGCATTCACAGAGCTCACCAGAGTCTTCCATGTGGCTCCT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000145569.2
CDS CAA 72 bp GCTTGTCTGCCTGCCTGGATCCCCTCCTCACAAGCTTaGATCTCTCAGTCCTCTCCACGTTGTCCTCTCTGC +
Preference number: 6 (lower is better)
Translates to: ACLPAWIPSSQA*ISQSSPRCPLC
Trigger: GCAGAGAGGACAACGTGGAGAGGACTGAGAGATCAAAGCTTGTGAGGAGGGGATCCAGGCAGGCAGACAAGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000145569.2
CDS CAA 72 bp GAGCTCTGTGAATGCCAGCCCACCTCCTTTAGCAGCTaGTCTGCCTGCCTGGATCCCCTCCTCACAAGCTTT +
Preference number: 6 (lower is better)
Translates to: ELCECQPTSFSS*SACLDPLLTSF
Trigger: AAAGCTTGTGAGGAGGGGATCCAGGCAGGCAGACAAGCTGCTAAAGGAGGTGGGCTGGCATTCACAGAGCTC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000145569.2
CDS CAA 90 bp GACTCTGGTGAGCTCTGTGAATGCCAGCCCACCTCCTTTAGCAGCTaGTCTGCCTGCCTGGATCCCCTCCTCACAAGCTTTGATCTCTCA +
Preference number: 6 (lower is better)
Translates to: DSGELCECQPTSFSS*SACLDPLLTSFDLS
Trigger: TGAGAGATCAAAGCTTGTGAGGAGGGGATCCAGGCAGGCAGACAAGCTGCTAAAGGAGGTGGGCTGGCATTCACAGAGCTCACCAGAGTC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000145569.2
CDS GCA 72 bp GAATGCCAGCCCACCTCCTTTAGCAGCTTGTCTGCCTaGCTGGATCCCCTCCTCACAAGCTTTGATCTCTCA +
Preference number: 6 (lower is better)
Translates to: ECQPTSFSSLSA*LDPLLTSFDLS
Trigger: TGAGAGATCAAAGCTTGTGAGGAGGGGATCCAGGCAGGCAGACAAGCTGCTAAAGGAGGTGGGCTGGCATTC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000145569.2
CDS CAA 72 bp TTCTCAGTCAGGATAGAAGACAGGATAGACATGAACTaGTCCCAGGCTTCGTGGACCTCAGGGGTGAAGTCG +
Preference number: 6 (lower is better)
Translates to: FSVRIEDRIDMN*SQASWTSGVKS
Trigger: CGACTTCACCCCTGAGGTCCACGAAGCCTGGGACAAGTTCATGTCTATCCTGTCTTCTATCCTGACTGAGAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000020531.9
ENSMUST00000145569.2