Pregenerated sensors for HAVCR2 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000020399Ensembl transcript IDs: ENSMUST00000020668.15, ENSMUST00000109229.2
Found 110 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGCAGGTTCATGTaGATGTCTCTTCTGAGAGCAGAGGACAACCCCCATGGACATTCG | + |
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Preference number: 1 (lower is better) Translates to: VCVCVCVCVCVCRFM*MSLLRAEDNPHGHS Trigger: CGAATGTCCATGGGGGTTGTCCTCTGCTCTCAGAAGAGACATGCACATGAACCTGCACACACACACACACACACACACACACACACACAC 52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000020668.15 ENSMUST00000109229.2 |
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| 3UTR CCA 90 bp | ACCGGTTGTTCTTCTGTCAGAAACAGCTCCAGTTTCCTCCAGGAATaGAGAAGTTGTCTGAGTCAGTTCCCCTTGAGCACACAACAGTCA | + |
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Preference number: 1 (lower is better) Translates to: TGCSSVRNSSSFLQE*RSCLSQFPLSTQQS Trigger: TGACTGTTGTGTGCTCAAGGGGAACTGACTCAGACAACTTCTCCATTCCTGGAGGAAACTGGAGCTGTTTCTGACAGAAGAACAACCGGT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000020668.15 ENSMUST00000109229.2 |
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| 3UTR GCA 90 bp | GTCAAAGTTTGCCTTTCGCAGGGTTTCCTTTTACAGACAGCAGGCTaGTTGCGGGTAACCTTTTTCTTCTGTAAGAAGAGTCTGGCAGTG | + |
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Preference number: 1 (lower is better) Translates to: VKVCLSQGFLLQTAG*LRVTFFFCKKSLAV Trigger: CACTGCCAGACTCTTCTTACAGAAGAAAAAGGTTACCCGCAAGCAGCCTGCTGTCTGTAAAAGGAAACCCTGCGAAAGGCAAACTTTGAC 48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000020668.15 ENSMUST00000109229.2 |
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| 3UTR GCA 90 bp | GGATCTGTTGTGCCTTTACCTCTCCATCTCTTGAGTCTACAAGCATaGTCTACCAGGCCTAGCTTTTTCATGTGGGGTCTACGATCAAAT | + |
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Preference number: 1 (lower is better) Translates to: GSVVPLPLHLLSLQA*STRPSFFMWGLRSN Trigger: ATTTGATCGTAGACCCCACATGAAAAAGCTAGGCCTGGTAGAGCATGCTTGTAGACTCAAGAGATGGAGAGGTAAAGGCACAACAGATCC 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000020668.15 ENSMUST00000109229.2 |
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| 3UTR GCA 90 bp | GACGACTGTCCTCCCAAAGAATATTTTGCTGACTATATAGATTGCTaGAAGAGCTCTGCCTTCGTATGTCCCAGTCACCGGTTGTTCTTC | + |
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Preference number: 1 (lower is better) Translates to: DDCPPKEYFADYIDC*KSSAFVCPSHRLFF Trigger: GAAGAACAACCGGTGACTGGGACATACGAAGGCAGAGCTCTTGCAGCAATCTATATAGTCAGCAAAATATTCTTTGGGAGGACAGTCGTC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000020668.15 ENSMUST00000109229.2 |
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| 3UTR TCA 90 bp | CTCCAGCCTCCTGCTGTCTCTATGTTTATTTTCGTCTTTGGATTTTaGGACAGTCTTACCAGCATAGCCCTGGCTGACCTTGAACTTATC | + |
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Preference number: 1 (lower is better) Translates to: LQPPAVSMFIFVFGF*DSLTSIALADLELI Trigger: GATAAGTTCAAGGTCAGCCAGGGCTATGCTGGTAAGACTGTCTCAAAATCCAAAGACGAAAATAAACATAGAGACAGCAGGAGGCTGGAG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000020668.15 ENSMUST00000109229.2 |
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| 3UTR TCA 90 bp | TACCTTTCTGCTCACTTAATATTTTCACTCGGGGTCTATTTAATTTaGTTCTGTTATAGATGGGAGCCAGCACAGATCAAGGGCACTGGG | + |
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Preference number: 1 (lower is better) Translates to: YLSAHLIFSLGVYLI*FCYRWEPAQIKGTG Trigger: CCCAGTGCCCTTGATCTGTGCTGGCTCCCATCTATAACAGAATCAAATTAAATAGACCCCGAGTGAAAATATTAAGTGAGCAGAAAGGTA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000020668.15 ENSMUST00000109229.2 |
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| 3UTR-3UTR TCA 90 bp | TTCTGTAAGAAGAGTCTGGCAGTGTTGGGCACAGTGCTCCTGAACTCTCCACGCTGTGCATGTCTCTTCTaGGAGCAGAGGACAACCCCC | + |
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Preference number: 2 (lower is better) Translates to: FCKKSLAVLGTVLLNSPRCACLF*EQRTTP Trigger: GGGGGTTGTCCTCTGCTCTCAGAAGAGACATGCACA...GCGTGGAGAGTTCAGGAGCACTGTGCCCAACACTGCCAGACTCTTCTTACAGAA 54% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000020668.15 ENSMUST00000109229.2 |
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| 3UTR CAA 90 bp | TGCTTGCGGGTAACCTTTTTCTTCTGTAAGAAGAGTCTGGCAGTGTaGGGCACAGTGCTCCTGAACTCTCCACGCTTCTGCTCCAGCCTT | + |
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Preference number: 2 (lower is better) Translates to: CLRVTFFFCKKSLAV*GTVLLNSPRFCSSL Trigger: AAGGCTGGAGCAGAAGCGTGGAGAGTTCAGGAGCACTGTGCCCAACACTGCCAGACTCTTCTTACAGAAGAAAAAGGTTACCCGCAAGCA 52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000020668.15 ENSMUST00000109229.2 |
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| 3UTR-3UTR TCA 90 bp | TGCCATGCTCCCACTCATGTCTTAACAGAGGCAGAGGAGAGTCCTGTAGAGATATGTGCATGTCTCTTCTaGGAGCAGAGGACAACCCCC | + |
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Preference number: 2 (lower is better) Translates to: CHAPTHVLTEAEESPVEICACLF*EQRTTP Trigger: GGGGGTTGTCCTCTGCTCTCAGAAGAGACATGCACA...TATCTCTACAGGACTCTCCTCTGCCTCTGTTAAGACATGAGTGGGAGCATGGCA 52% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000020668.15 ENSMUST00000109229.2 |
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| 3UTR-3UTR CCA 90 bp | TTCTGTAAGAAGAGTCTGGCAGTGTTGGGCACAGTGCTCCTGAACTCTCCACGCAGACAGGGACTCTTGTaGACTTGGAACTCAGCACCT | + |
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Preference number: 2 (lower is better) Translates to: FCKKSLAVLGTVLLNSPRRQGLL*TWNSAP Trigger: AGGTGCTGAGTTCCAAGTCCACAAGAGTCCCTGTCT...GCGTGGAGAGTTCAGGAGCACTGTGCCCAACACTGCCAGACTCTTCTTACAGAA 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000020668.15 ENSMUST00000109229.2 |
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| 3UTR-3UTR TCA 90 bp | CGCTTCTGCTCCAGCCTTCTGAGTGCTGGAATTAATTACTGGACTGCTCTGCCAGGGAGATCCGATCCCTaGAACTCAGGGATAAAATGG | + |
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Preference number: 2 (lower is better) Translates to: RFCSSLLSAGINYWTALPGRSDP*NSGIKW Trigger: CCATTTTATCCCTGAGTTTCAGGGATCGGATCTCCC...TGGCAGAGCAGTCCAGTAATTAATTCCAGCACTCAGAAGGCTGGAGCAGAAGCG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000020668.15 ENSMUST00000109229.2 |
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| 3UTR-3UTR TCA 90 bp | TTCTGTAAGAAGAGTCTGGCAGTGTTGGGCACAGTGCTCCTGAACTCTCCACGCCAGTCCATCTTACTTTaGGACAGGGACTCTTGTGGA | + |
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Preference number: 2 (lower is better) Translates to: FCKKSLAVLGTVLLNSPRQSILL*DRDSCG Trigger: TCCACAAGAGTCCCTGTCTCAAAGTAAGATGGACTG...GCGTGGAGAGTTCAGGAGCACTGTGCCCAACACTGCCAGACTCTTCTTACAGAA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000020668.15 ENSMUST00000109229.2 |
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| 3UTR-3UTR GCA 90 bp | TTCTGTAAGAAGAGTCTGGCAGTGTTGGGCACAGTGCTCCTGAACTCTCCACGCCCTGTTCAGGAGCTTTaGAGATATACCACAAACCTC | + |
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Preference number: 2 (lower is better) Translates to: FCKKSLAVLGTVLLNSPRPVQEL*RYTTNL Trigger: GAGGTTTGTGGTATATCTGCAAAGCTCCTGAACAGG...GCGTGGAGAGTTCAGGAGCACTGTGCCCAACACTGCCAGACTCTTCTTACAGAA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000020668.15 ENSMUST00000109229.2 |
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| 3UTR-3UTR CCA 90 bp | CGCTTCTGCTCCAGCCTTCTGAGTGCTGGAATTAATTACTGGACTGCTCTGCCATTTTCTCAGTGGCTGTaGTCAGAACCTCCAATGAGG | + |
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Preference number: 2 (lower is better) Translates to: RFCSSLLSAGINYWTALPFSQWL*SEPPMR Trigger: CCTCATTGGAGGTTCTGACCACAGCCACTGAGAAAA...TGGCAGAGCAGTCCAGTAATTAATTCCAGCACTCAGAAGGCTGGAGCAGAAGCG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000020668.15 ENSMUST00000109229.2 |
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| 3UTR-3UTR CCA 90 bp | TGCCTTCGTATGTCCCAGTCACCGGTTGTTCTTCTGTCAGAAACAGCTCCAGTTGGACTCTTGTGGACTTaGAACTCAGCACCTAGGCTA | + |
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Preference number: 2 (lower is better) Translates to: CLRMSQSPVVLLSETAPVGLLWT*NSAPRL Trigger: TAGCCTAGGTGCTGAGTTCCAAGTCCACAAGAGTCC...AACTGGAGCTGTTTCTGACAGAAGAACAACCGGTGACTGGGACATACGAAGGCA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000020668.15 ENSMUST00000109229.2 |
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| 3UTR-3UTR TCA 90 bp | ACCTTTTTCTTCTGTAAGAAGAGTCTGGCAGTGTTGGGCACAGTGCTCCTGAACGGGAGATCCGATCCCTaGAACTCAGGGATAAAATGG | + |
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Preference number: 2 (lower is better) Translates to: TFFFCKKSLAVLGTVLLNGRSDP*NSGIKW Trigger: CCATTTTATCCCTGAGTTTCAGGGATCGGATCTCCC...GTTCAGGAGCACTGTGCCCAACACTGCCAGACTCTTCTTACAGAAGAAAAAGGT 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000020668.15 ENSMUST00000109229.2 |
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| 3UTR-3UTR GCA 90 bp | ACCTTTTTCTTCTGTAAGAAGAGTCTGGCAGTGTTGGGCACAGTGCTCCTGAACCGTGCTTGTACAAAATaGACCTCACTGTCCGAGCCT | + |
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Preference number: 2 (lower is better) Translates to: TFFFCKKSLAVLGTVLLNRACTK*TSLSEP Trigger: AGGCTCGGACAGTGAGGTGCATTTTGTACAAGCACG...GTTCAGGAGCACTGTGCCCAACACTGCCAGACTCTTCTTACAGAAGAAAAAGGT 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000020668.15 ENSMUST00000109229.2 |
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| 3UTR-3UTR CCA 90 bp | TGCCTTCGTATGTCCCAGTCACCGGTTGTTCTTCTGTCAGAAACAGCTCCAGTTTTGAAGTCTCTGGAGTaGGAGATCCGATCCCTGAAA | + |
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Preference number: 2 (lower is better) Translates to: CLRMSQSPVVLLSETAPVLKSLE*EIRSLK Trigger: TTTCAGGGATCGGATCTCCCACTCCAGAGACTTCAA...AACTGGAGCTGTTTCTGACAGAAGAACAACCGGTGACTGGGACATACGAAGGCA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000020668.15 ENSMUST00000109229.2 |
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| 3UTR CAA 90 bp | TCCAGTTTCCTCCAGGAATGGAGAAGTTGTCTGAGTCAGTTCCCCTaGAGCACACAACAGTCAAAGTTTGCCTTTCGCAGGGTTTCCTTT | + |
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Preference number: 2 (lower is better) Translates to: SSFLQEWRSCLSQFP*STQQSKFAFRRVSF Trigger: AAAGGAAACCCTGCGAAAGGCAAACTTTGACTGTTGTGTGCTCAAGGGGAACTGACTCAGACAACTTCTCCATTCCTGGAGGAAACTGGA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000020668.15 ENSMUST00000109229.2 |
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| 3UTR-3UTR TCA 90 bp | CGCTTCTGCTCCAGCCTTCTGAGTGCTGGAATTAATTACTGGACTGCTCTGCCACATTTCAATGTAGCATaGGTTACAGTCGAATCCCCT | + |
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Preference number: 2 (lower is better) Translates to: RFCSSLLSAGINYWTALPHFNVA*VTVESP Trigger: AGGGGATTCGACTGTAACTCATGCTACATTGAAATG...TGGCAGAGCAGTCCAGTAATTAATTCCAGCACTCAGAAGGCTGGAGCAGAAGCG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000020668.15 ENSMUST00000109229.2 |
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| 3UTR-3UTR GCA 90 bp | ACCTTTTTCTTCTGTAAGAAGAGTCTGGCAGTGTTGGGCACAGTGCTCCTGAACGTGTGCAGGTTCATGTaGATGTCTCTTCTGAGAGCA | + |
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Preference number: 2 (lower is better) Translates to: TFFFCKKSLAVLGTVLLNVCRFM*MSLLRA Trigger: TGCTCTCAGAAGAGACATGCACATGAACCTGCACAC...GTTCAGGAGCACTGTGCCCAACACTGCCAGACTCTTCTTACAGAAGAAAAAGGT 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000020668.15 ENSMUST00000109229.2 |
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| 3UTR CAA 90 bp | AAAGTTTGCCTTTCGCAGGGTTTCCTTTTACAGACAGCAGGCTGCTaGCGGGTAACCTTTTTCTTCTGTAAGAAGAGTCTGGCAGTGTTG | + |
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Preference number: 2 (lower is better) Translates to: KVCLSQGFLLQTAGC*RVTFFFCKKSLAVL Trigger: CAACACTGCCAGACTCTTCTTACAGAAGAAAAAGGTTACCCGCAAGCAGCCTGCTGTCTGTAAAAGGAAACCCTGCGAAAGGCAAACTTT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000020668.15 ENSMUST00000109229.2 |
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| 3UTR-3UTR CCA 90 bp | GAGTCCTGTAGAGATACATGTTATAGAGAGGTAGCAGGCACAGAGAGAACCTTCTTTTCTCAGTGGCTGTaGTCAGAACCTCCAATGAGG | + |
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Preference number: 2 (lower is better) Translates to: ESCRDTCYREVAGTERTFFSQWL*SEPPMR Trigger: CCTCATTGGAGGTTCTGACCACAGCCACTGAGAAAA...GAAGGTTCTCTCTGTGCCTGCTACCTCTCTATAACATGTATCTCTACAGGACTC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000020668.15 ENSMUST00000109229.2 |
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| 3UTR-3UTR CCA 90 bp | CTTAACAGAGGCAGAGGAGAGTCCTGTAGAGATACATGTTATAGAGAGGTAGCAAGACAGGGACTCTTGTaGACTTGGAACTCAGCACCT | + |
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Preference number: 2 (lower is better) Translates to: LNRGRGESCRDTCYREVARQGLL*TWNSAP Trigger: AGGTGCTGAGTTCCAAGTCCACAAGAGTCCCTGTCT...TGCTACCTCTCTATAACATGTATCTCTACAGGACTCTCCTCTGCCTCTGTTAAG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000020668.15 ENSMUST00000109229.2 |
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| 3UTR-3UTR TCA 90 bp | TGCCTTCGTATGTCCCAGTCACCGGTTGTTCTTCTGTCAGAAACAGCTCCAGTTTTCGTCTTTGGATTTTaGGACAGTCTTACCAGCATA | + |
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Preference number: 2 (lower is better) Translates to: CLRMSQSPVVLLSETAPVFVFGF*DSLTSI Trigger: TATGCTGGTAAGACTGTCTCAAAATCCAAAGACGAA...AACTGGAGCTGTTTCTGACAGAAGAACAACCGGTGACTGGGACATACGAAGGCA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000020668.15 ENSMUST00000109229.2 |
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| 3UTR-3UTR TCA 90 bp | CTTAACAGAGGCAGAGGAGAGTCCTGTAGAGATACATGTTATAGAGAGGTAGCACAGTCCATCTTACTTTaGGACAGGGACTCTTGTGGA | + |
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Preference number: 2 (lower is better) Translates to: LNRGRGESCRDTCYREVAQSILL*DRDSCG Trigger: TCCACAAGAGTCCCTGTCTCAAAGTAAGATGGACTG...TGCTACCTCTCTATAACATGTATCTCTACAGGACTCTCCTCTGCCTCTGTTAAG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000020668.15 ENSMUST00000109229.2 |
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| 3UTR-3UTR GCA 90 bp | TGCCATGCTCCCACTCATGTCTTAACAGAGGCAGAGGAGAGTCCTGTAGAGATATCATCTCCAGCCTCCTaGTGTCTCTATGTTTATTTT | + |
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Preference number: 2 (lower is better) Translates to: CHAPTHVLTEAEESPVEISSPAS*CLYVYF Trigger: AAAATAAACATAGAGACAGCAGGAGGCTGGAGATGA...TATCTCTACAGGACTCTCCTCTGCCTCTGTTAAGACATGAGTGGGAGCATGGCA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000020668.15 ENSMUST00000109229.2 |
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| 3UTR-3UTR GCA 90 bp | CTTAACAGAGGCAGAGGAGAGTCCTGTAGAGATACATGTTATAGAGAGGTAGCAGTGTGCAGGTTCATGTaGATGTCTCTTCTGAGAGCA | + |
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Preference number: 2 (lower is better) Translates to: LNRGRGESCRDTCYREVAVCRFM*MSLLRA Trigger: TGCTCTCAGAAGAGACATGCACATGAACCTGCACAC...TGCTACCTCTCTATAACATGTATCTCTACAGGACTCTCCTCTGCCTCTGTTAAG 46% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000020668.15 ENSMUST00000109229.2 |
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| 3UTR-3UTR GCA 90 bp | ACCTTTTTCTTCTGTAAGAAGAGTCTGGCAGTGTTGGGCACAGTGCTCCTGAACTCATCTCCAGCCTCCTaGTGTCTCTATGTTTATTTT | + |
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Preference number: 2 (lower is better) Translates to: TFFFCKKSLAVLGTVLLNSSPAS*CLYVYF Trigger: AAAATAAACATAGAGACAGCAGGAGGCTGGAGATGA...GTTCAGGAGCACTGTGCCCAACACTGCCAGACTCTTCTTACAGAAGAAAAAGGT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000020668.15 ENSMUST00000109229.2 |
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| 3UTR-3UTR TCA 90 bp | CTTAACAGAGGCAGAGGAGAGTCCTGTAGAGATACATGTTATAGAGAGGTAGCACATTTCAATGTAGCATaGGTTACAGTCGAATCCCCT | + |
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Preference number: 2 (lower is better) Translates to: LNRGRGESCRDTCYREVAHFNVA*VTVESP Trigger: AGGGGATTCGACTGTAACTCATGCTACATTGAAATG...TGCTACCTCTCTATAACATGTATCTCTACAGGACTCTCCTCTGCCTCTGTTAAG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000020668.15 ENSMUST00000109229.2 |
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| 3UTR-3UTR CCA 90 bp | TGCCTAAGGTTCCCAAGTTATATAGTGTTAAGCATATGCCACCTGGCTTTTTCTGAACTCTTTTCTCAGTaGCTGTGGTCAGAACCTCCA | + |
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Preference number: 2 (lower is better) Translates to: CLRFPSYIVLSICHLAFSELFSQ*LWSEPP Trigger: TGGAGGTTCTGACCACAGCCACTGAGAAAAGAGTTC...AGAAAAAGCCAGGTGGCATATGCTTAACACTATATAACTTGGGAACCTTAGGCA 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000020668.15 ENSMUST00000109229.2 |
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| 3UTR-3UTR CCA 90 bp | AACTTATCACCCTCCTGCCTAAGGTTCCCAAGTTATATAGTGTTAAGCATATGCGAACTCTTTTCTCAGTaGCTGTGGTCAGAACCTCCA | + |
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Preference number: 2 (lower is better) Translates to: NLSPSCLRFPSYIVLSICELFSQ*LWSEPP Trigger: TGGAGGTTCTGACCACAGCCACTGAGAAAAGAGTTC...GCATATGCTTAACACTATATAACTTGGGAACCTTAGGCAGGAGGGTGATAAGTT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000020668.15 ENSMUST00000109229.2 |
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| 3UTR-3UTR GCA 90 bp | CAATTTGGTGACGACTGTCCTCCCAAAGAATATTTTGCTGACTATATAGATTGCCCTGTTCAGGAGCTTTaGAGATATACCACAAACCTC | + |
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Preference number: 2 (lower is better) Translates to: QFGDDCPPKEYFADYIDCPVQEL*RYTTNL Trigger: GAGGTTTGTGGTATATCTGCAAAGCTCCTGAACAGG...GCAATCTATATAGTCAGCAAAATATTCTTTGGGAGGACAGTCGTCACCAAATTG 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000020668.15 ENSMUST00000109229.2 |
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| 3UTR TCA 72 bp | CTCTTGTGGACTTGGAACTCAGCACCTAGGCTAAGCTaGCTGCACGCAAGCCCCGGGGATCTGTTGTGCCTT | + |
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Preference number: 3 (lower is better) Translates to: LLWTWNSAPRLS*LHASPGDLLCL Trigger: AAGGCACAACAGATCCCCGGGGCTTGCGTGCAGTCAGCTTAGCCTAGGTGCTGAGTTCCAAGTCCACAAGAG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000020668.15 ENSMUST00000109229.2 |
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| 3UTR-3UTR CAA 90 bp | CGCTTCTGCTCCAGCCTTCTGAGTGCTGGAATTAATTACTGGACTGCTCTGCCAAGCCCCGGGGATCTGTaGTGCCTTTACCTCTCCATC | + |
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Preference number: 3 (lower is better) Translates to: RFCSSLLSAGINYWTALPSPGDL*CLYLSI Trigger: GATGGAGAGGTAAAGGCACAACAGATCCCCGGGGCT...TGGCAGAGCAGTCCAGTAATTAATTCCAGCACTCAGAAGGCTGGAGCAGAAGCG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000020668.15 ENSMUST00000109229.2 |
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| 3UTR GCA 72 bp | CTGAGTGCTGGAATTAATTACTGGACTGCTCTGCCATaGTCCCACTCATGTCTTAACAGAGGCAGAGGAGAG | + |
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Preference number: 3 (lower is better) Translates to: LSAGINYWTALP*SHSCLNRGRGE Trigger: CTCTCCTCTGCCTCTGTTAAGACATGAGTGGGAGCATGGCAGAGCAGTCCAGTAATTAATTCCAGCACTCAG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000020668.15 ENSMUST00000109229.2 |
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| 3UTR GCA 72 bp | GAGTCAGTTCCCCTTGAGCACACAACAGTCAAAGTTTaGCTTTCGCAGGGTTTCCTTTTACAGACAGCAGGC | + |
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Preference number: 3 (lower is better) Translates to: ESVPLEHTTVKV*LSQGFLLQTAG Trigger: GCCTGCTGTCTGTAAAAGGAAACCCTGCGAAAGGCAAACTTTGACTGTTGTGTGCTCAAGGGGAACTGACTC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000020668.15 ENSMUST00000109229.2 |
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| 3UTR-3UTR CAA 90 bp | CGCTTCTGCTCCAGCCTTCTGAGTGCTGGAATTAATTACTGGACTGCTCTGCCATTACCTCTCCATCTCTaGAGTCTACAAGCATGCTCT | + |
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Preference number: 3 (lower is better) Translates to: RFCSSLLSAGINYWTALPLPLHL*SLQACS Trigger: AGAGCATGCTTGTAGACTCAAGAGATGGAGAGGTAA...TGGCAGAGCAGTCCAGTAATTAATTCCAGCACTCAGAAGGCTGGAGCAGAAGCG 49% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000020668.15 ENSMUST00000109229.2 |
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| 3UTR-3UTR CAA 90 bp | TTTCCTCCAGGAATGGAGAAGTTGTCTGAGTCAGTTCCCCTTGAGCACACAACATTGAGACAGGGACTCTaGTGGACTTGGAACTCAGCA | + |
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Preference number: 3 (lower is better) Translates to: FPPGMEKLSESVPLEHTTLRQGL*WTWNSA Trigger: TGCTGAGTTCCAAGTCCACAAGAGTCCCTGTCTCAA...TGTTGTGTGCTCAAGGGGAACTGACTCAGACAACTTCTCCATTCCTGGAGGAAA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000020668.15 ENSMUST00000109229.2 |
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| 3UTR-3UTR CAA 90 bp | TGCCTTCGTATGTCCCAGTCACCGGTTGTTCTTCTGTCAGAAACAGCTCCAGTTCACAACAGTCAAAGTTaGCCTTTCGCAGGGTTTCCT | + |
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Preference number: 3 (lower is better) Translates to: CLRMSQSPVVLLSETAPVHNSQS*PFAGFP Trigger: AGGAAACCCTGCGAAAGGCAAACTTTGACTGTTGTG...AACTGGAGCTGTTTCTGACAGAAGAACAACCGGTGACTGGGACATACGAAGGCA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000020668.15 ENSMUST00000109229.2 |
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| 3UTR TCA 72 bp | CATGGACATTCGCCAGATACTCAGTCCATCTTACTTTaGGACAGGGACTCTTGTGGACTTGGAACTCAGCAC | + |
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Preference number: 3 (lower is better) Translates to: HGHSPDTQSILL*DRDSCGLGTQH Trigger: GTGCTGAGTTCCAAGTCCACAAGAGTCCCTGTCTCAAAGTAAGATGGACTGAGTATCTGGCGAATGTCCATG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000020668.15 ENSMUST00000109229.2 |
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| 3UTR CCA 72 bp | TTCTGCTCCAGCCTTCTGAGTGCTGGAATTAATTACTaGACTGCTCTGCCATGCTCCCACTCATGTCTTAAC | + |
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Preference number: 3 (lower is better) Translates to: FCSSLLSAGINY*TALPCSHSCLN Trigger: GTTAAGACATGAGTGGGAGCATGGCAGAGCAGTCCAGTAATTAATTCCAGCACTCAGAAGGCTGGAGCAGAA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000020668.15 ENSMUST00000109229.2 |
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| 3UTR CCA 72 bp | TCTTCTGTCAGAAACAGCTCCAGTTTCCTCCAGGAATaGAGAAGTTGTCTGAGTCAGTTCCCCTTGAGCACA | + |
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Preference number: 3 (lower is better) Translates to: SSVRNSSSFLQE*RSCLSQFPLST Trigger: TGTGCTCAAGGGGAACTGACTCAGACAACTTCTCCATTCCTGGAGGAAACTGGAGCTGTTTCTGACAGAAGA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000020668.15 ENSMUST00000109229.2 |
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| 3UTR-3UTR CAA 90 bp | TTTCCTCCAGGAATGGAGAAGTTGTCTGAGTCAGTTCCCCTTGAGCACACAACATTACCTCTCCATCTCTaGAGTCTACAAGCATGCTCT | + |
|
Preference number: 3 (lower is better) Translates to: FPPGMEKLSESVPLEHTTLPLHL*SLQACS Trigger: AGAGCATGCTTGTAGACTCAAGAGATGGAGAGGTAA...TGTTGTGTGCTCAAGGGGAACTGACTCAGACAACTTCTCCATTCCTGGAGGAAA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000020668.15 ENSMUST00000109229.2 |
||
| 3UTR GCA 72 bp | TGCCTTTCGCAGGGTTTCCTTTTACAGACAGCAGGCTaGTTGCGGGTAACCTTTTTCTTCTGTAAGAAGAGT | + |
|
Preference number: 3 (lower is better) Translates to: CLSQGFLLQTAG*LRVTFFFCKKS Trigger: ACTCTTCTTACAGAAGAAAAAGGTTACCCGCAAGCAGCCTGCTGTCTGTAAAAGGAAACCCTGCGAAAGGCA 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000020668.15 ENSMUST00000109229.2 |
||
| 3UTR-3UTR CAA 90 bp | TTTCCTCCAGGAATGGAGAAGTTGTCTGAGTCAGTTCCCCTTGAGCACACAACATTTCGTCTTTGGATTTaGAGACAGTCTTACCAGCAT | + |
|
Preference number: 3 (lower is better) Translates to: FPPGMEKLSESVPLEHTTFRLWI*RQSYQH Trigger: ATGCTGGTAAGACTGTCTCAAAATCCAAAGACGAAA...TGTTGTGTGCTCAAGGGGAACTGACTCAGACAACTTCTCCATTCCTGGAGGAAA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000020668.15 ENSMUST00000109229.2 |
||
| 3UTR GCA 72 bp | TGTCCTCCCAAAGAATATTTTGCTGACTATATAGATTaGTGCAAGAGCTCTGCCTTCGTATGTCCCAGTCAC | + |
|
Preference number: 3 (lower is better) Translates to: CPPKEYFADYID*CKSSAFVCPSH Trigger: GTGACTGGGACATACGAAGGCAGAGCTCTTGCAGCAATCTATATAGTCAGCAAAATATTCTTTGGGAGGACA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000020668.15 ENSMUST00000109229.2 |
||
| 3UTR-3UTR CAA 90 bp | CTTAACAGAGGCAGAGGAGAGTCCTGTAGAGATACATGTTATAGAGAGGTAGCATTTCGTCTTTGGATTTaGAGACAGTCTTACCAGCAT | + |
|
Preference number: 3 (lower is better) Translates to: LNRGRGESCRDTCYREVAFRLWI*RQSYQH Trigger: ATGCTGGTAAGACTGTCTCAAAATCCAAAGACGAAA...TGCTACCTCTCTATAACATGTATCTCTACAGGACTCTCCTCTGCCTCTGTTAAG 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000020668.15 ENSMUST00000109229.2 |
||
| 3UTR-3UTR CAA 90 bp | GAACAAAGCTACCTTTCTGCTCACTTAATATTTTCACTCGGGGTCTATTTAATTCCAGGAATGGAGAAGTaGTCTGAGTCAGTTCCCCTT | + |
|
Preference number: 3 (lower is better) Translates to: EQSYLSAHLIFSLGVYLIPGMEK*SESVPL Trigger: AAGGGGAACTGACTCAGACAACTTCTCCATTCCTGG...AATTAAATAGACCCCGAGTGAAAATATTAAGTGAGCAGAAAGGTAGCTTTGTTC 41% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000020668.15 ENSMUST00000109229.2 |
||
| 3UTR TCA 72 bp | GCTCACTTAATATTTTCACTCGGGGTCTATTTAATTTaGTTCTGTTATAGATGGGAGCCAGCACAGATCAAG | + |
|
Preference number: 3 (lower is better) Translates to: AHLIFSLGVYLI*FCYRWEPAQIK Trigger: CTTGATCTGTGCTGGCTCCCATCTATAACAGAATCAAATTAAATAGACCCCGAGTGAAAATATTAAGTGAGC 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000020668.15 ENSMUST00000109229.2 |
||
| CDS-3UTR TCA 90 bp | TTCTGTAAGAAGAGTCTGGCAGTGTTGGGCACAGTGCTCCTGAACTCTCCACGCTCCCCATGGGCAGTCTaGGCTGGAGTGACCTTGGCT | + |
|
Preference number: 4 (lower is better) Translates to: FCKKSLAVLGTVLLNSPRSPWAV*AGVTLA Trigger: AGCCAAGGTCACTCCAGCTCAGACTGCCCATGGGGA...GCGTGGAGAGTTCAGGAGCACTGTGCCCAACACTGCCAGACTCTTCTTACAGAA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000020668.15 ENSMUST00000109229.2 |
||
| CDS-3UTR TCA 90 bp | TTCTGTAAGAAGAGTCTGGCAGTGTTGGGCACAGTGCTCCTGAACTCTCCACGCCTCGTTGGTACACTGTaGCCAAGGACAGAATCCCTT | + |
|
Preference number: 4 (lower is better) Translates to: FCKKSLAVLGTVLLNSPRLVGTL*PRTESL Trigger: AAGGGATTCTGTCCTTGGTCACAGTGTACCAACGAG...GCGTGGAGAGTTCAGGAGCACTGTGCCCAACACTGCCAGACTCTTCTTACAGAA 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020668.15 |
||
| CDS-3UTR TCA 90 bp | TTCTGTAAGAAGAGTCTGGCAGTGTTGGGCACAGTGCTCCTGAACTCTCCACGCACACGTCTCCTTTGTTaGGATCGCCCTTTAGCTGGT | + |
|
Preference number: 4 (lower is better) Translates to: FCKKSLAVLGTVLLNSPRTRLLC*DRPLAG Trigger: ACCAGCTAAAGGGCGATCTCAACAAAGGAGACGTGT...GCGTGGAGAGTTCAGGAGCACTGTGCCCAACACTGCCAGACTCTTCTTACAGAA 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000020668.15 ENSMUST00000109229.2 |
||
| CDS-3UTR TCA 90 bp | CCCAGAAAACTGGAACTCTTTTCTCAGTGGCTGTGGTCAGAACCTCCAATGAGGCCTCAGAGCGAATCCTaGCTGCTCCTGCATTTGCCA | + |
|
Preference number: 4 (lower is better) Translates to: PRKLELFSQWLWSEPPMRPQSES*LLLHLP Trigger: TGGCAAATGCAGGAGCAGTCAGGATTCGCTCTGAGG...CCTCATTGGAGGTTCTGACCACAGCCACTGAGAAAAGAGTTCCAGTTTTCTGGG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000020668.15 ENSMUST00000109229.2 |
||
| CDS-3UTR TCA 90 bp | TGCCTTCGTATGTCCCAGTCACCGGTTGTTCTTCTGTCAGAAACAGCTCCAGTTCCTCAGAGCGAATCCTaGCTGCTCCTGCATTTGCCA | + |
|
Preference number: 4 (lower is better) Translates to: CLRMSQSPVVLLSETAPVPQSES*LLLHLP Trigger: TGGCAAATGCAGGAGCAGTCAGGATTCGCTCTGAGG...AACTGGAGCTGTTTCTGACAGAAGAACAACCGGTGACTGGGACATACGAAGGCA 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000020668.15 ENSMUST00000109229.2 |
||
| CDS-3UTR GCA 90 bp | TTCTGTAAGAAGAGTCTGGCAGTGTTGGGCACAGTGCTCCTGAACTCTCCACGCGACACCAATGATAAGTaGCAGGGTCAACCCAGCAGA | + |
|
Preference number: 4 (lower is better) Translates to: FCKKSLAVLGTVLLNSPRDTNDK*QGQPSR Trigger: TCTGCTGGGTTGACCCTGGCACTTATCATTGGTGTC...GCGTGGAGAGTTCAGGAGCACTGTGCCCAACACTGCCAGACTCTTCTTACAGAA 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000020668.15 ENSMUST00000109229.2 |
||
| CDS-3UTR GCA 90 bp | CGCTTCTGCTCCAGCCTTCTGAGTGCTGGAATTAATTACTGGACTGCTCTGCCACTTGCAAGTAGTAGTTaGAGCAGCAGCAGGACACAG | + |
|
Preference number: 4 (lower is better) Translates to: RFCSSLLSAGINYWTALPLASSS*SSSRTQ Trigger: CTGTGTCCTGCTGCTGCTGCAACTACTACTTGCAAG...TGGCAGAGCAGTCCAGTAATTAATTCCAGCACTCAGAAGGCTGGAGCAGAAGCG 51% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000020668.15 ENSMUST00000109229.2 |
||
| CDS-3UTR CCA 90 bp | TGCCATGCTCCCACTCATGTCTTAACAGAGGCAGAGGAGAGTCCTGTAGAGATAATTTGCCAACCCTCCTaGAGGCAAGTTGGCCAGTGT | + |
|
Preference number: 4 (lower is better) Translates to: CHAPTHVLTEAEESPVEIICQPS*RQVGQC Trigger: ACACTGGCCAACTTGCCTCCAGGAGGGTTGGCAAAT...TATCTCTACAGGACTCTCCTCTGCCTCTGTTAAGACATGAGTGGGAGCATGGCA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000020668.15 ENSMUST00000109229.2 |
||
| 3UTR CAA 72 bp | TGCAAGAGCTCTGCCTTCGTATGTCCCAGTCACCGGTaGTTCTTCTGTCAGAAACAGCTCCAGTTTCCTCCA | + |
|
Preference number: 4 (lower is better) Translates to: CKSSAFVCPSHR*FFCQKQLQFPP Trigger: TGGAGGAAACTGGAGCTGTTTCTGACAGAAGAACAACCGGTGACTGGGACATACGAAGGCAGAGCTCTTGCA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000020668.15 ENSMUST00000109229.2 |
||
| CDS-3UTR TCA 90 bp | TGCCATGCTCCCACTCATGTCTTAACAGAGGCAGAGGAGAGTCCTGTAGAGATAACACGTCTCCTTTGTTaGGATCGCCCTTTAGCTGGT | + |
|
Preference number: 4 (lower is better) Translates to: CHAPTHVLTEAEESPVEITRLLC*DRPLAG Trigger: ACCAGCTAAAGGGCGATCTCAACAAAGGAGACGTGT...TATCTCTACAGGACTCTCCTCTGCCTCTGTTAAGACATGAGTGGGAGCATGGCA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000020668.15 ENSMUST00000109229.2 |
||
| CDS-3UTR TCA 90 bp | CCCAGAAAACTGGAACTCTTTTCTCAGTGGCTGTGGTCAGAACCTCCAATGAGGCAGTGTCTGTGTCTCTaGACCATTTCTCTCCGTGGT | + |
|
Preference number: 4 (lower is better) Translates to: PRKLELFSQWLWSEPPMRQCLCL*TISLRG Trigger: ACCACGGAGAGAAATGGTTCAGAGACACAGACACTG...CCTCATTGGAGGTTCTGACCACAGCCACTGAGAAAAGAGTTCCAGTTTTCTGGG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000020668.15 ENSMUST00000109229.2 |
||
| CDS-3UTR GCA 90 bp | TGCCATGCTCCCACTCATGTCTTAACAGAGGCAGAGGAGAGTCCTGTAGAGATAGACACCAATGATAAGTaGCAGGGTCAACCCAGCAGA | + |
|
Preference number: 4 (lower is better) Translates to: CHAPTHVLTEAEESPVEIDTNDK*QGQPSR Trigger: TCTGCTGGGTTGACCCTGGCACTTATCATTGGTGTC...TATCTCTACAGGACTCTCCTCTGCCTCTGTTAAGACATGAGTGGGAGCATGGCA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000020668.15 ENSMUST00000109229.2 |
||
| CDS-3UTR CCA 90 bp | ACCTTTTTCTTCTGTAAGAAGAGTCTGGCAGTGTTGGGCACAGTGCTCCTGAACATTTGCCAACCCTCCTaGAGGCAAGTTGGCCAGTGT | + |
|
Preference number: 4 (lower is better) Translates to: TFFFCKKSLAVLGTVLLNICQPS*RQVGQC Trigger: ACACTGGCCAACTTGCCTCCAGGAGGGTTGGCAAAT...GTTCAGGAGCACTGTGCCCAACACTGCCAGACTCTTCTTACAGAAGAAAAAGGT 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000020668.15 ENSMUST00000109229.2 |
||
| 3UTR CAA 72 bp | GTAACCTTTTTCTTCTGTAAGAAGAGTCTGGCAGTGTaGGGCACAGTGCTCCTGAACTCTCCACGCTTCTGC | + |
|
Preference number: 4 (lower is better) Translates to: VTFFFCKKSLAV*GTVLLNSPRFC Trigger: GCAGAAGCGTGGAGAGTTCAGGAGCACTGTGCCCAACACTGCCAGACTCTTCTTACAGAAGAAAAAGGTTAC 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000020668.15 ENSMUST00000109229.2 |
||
| 3UTR CAA 72 bp | CTCCAGGAATGGAGAAGTTGTCTGAGTCAGTTCCCCTaGAGCACACAACAGTCAAAGTTTGCCTTTCGCAGG | + |
|
Preference number: 4 (lower is better) Translates to: LQEWRSCLSQFP*STQQSKFAFRR Trigger: CCTGCGAAAGGCAAACTTTGACTGTTGTGTGCTCAAGGGGAACTGACTCAGACAACTTCTCCATTCCTGGAG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000020668.15 ENSMUST00000109229.2 |
||
| CDS-3UTR TCA 90 bp | AACTTATCACCCTCCTGCCTAAGGTTCCCAAGTTATATAGTGTTAAGCATATGCTCCCCATGGGCAGTCTaGGCTGGAGTGACCTTGGCT | + |
|
Preference number: 4 (lower is better) Translates to: NLSPSCLRFPSYIVLSICSPWAV*AGVTLA Trigger: AGCCAAGGTCACTCCAGCTCAGACTGCCCATGGGGA...GCATATGCTTAACACTATATAACTTGGGAACCTTAGGCAGGAGGGTGATAAGTT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000020668.15 ENSMUST00000109229.2 |
||
| CDS-3UTR TCA 90 bp | TTCTGTAAGAAGAGTCTGGCAGTGTTGGGCACAGTGCTCCTGAACTCTCCACGCGCAGTAGTACTCATTTaGATTCTCCACTTCATATAC | + |
|
Preference number: 4 (lower is better) Translates to: FCKKSLAVLGTVLLNSPRAVVLI*ILHFIY Trigger: GTATATGAAGTGGAGAATTCAAATGAGTACTACTGC...GCGTGGAGAGTTCAGGAGCACTGTGCCCAACACTGCCAGACTCTTCTTACAGAA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000020668.15 ENSMUST00000109229.2 |
||
| CDS-3UTR CCA 90 bp | TGCCATGCTCCCACTCATGTCTTAACAGAGGCAGAGGAGAGTCCTGTAGAGATAGTTCCATTGTTATTATaGAGGGTCACCAGTGTCTGT | + |
|
Preference number: 4 (lower is better) Translates to: CHAPTHVLTEAEESPVEIVPLLL*RVTSVC Trigger: ACAGACACTGGTGACCCTCCATAATAACAATGGAAC...TATCTCTACAGGACTCTCCTCTGCCTCTGTTAAGACATGAGTGGGAGCATGGCA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000020668.15 ENSMUST00000109229.2 |
||
| CDS-3UTR CCA 90 bp | TTTCCTCCAGGAATGGAGAAGTTGTCTGAGTCAGTTCCCCTTGAGCACACAACAAGATCGCCCTTTAGCTaGTATCTGCTGGATTTCTCA | + |
|
Preference number: 4 (lower is better) Translates to: FPPGMEKLSESVPLEHTTRSPFS*YLLDFS Trigger: TGAGAAATCCAGCAGATACCAGCTAAAGGGCGATCT...TGTTGTGTGCTCAAGGGGAACTGACTCAGACAACTTCTCCATTCCTGGAGGAAA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000109229.2 |
||
| 3UTR CAA 72 bp | CTTTCGCAGGGTTTCCTTTTACAGACAGCAGGCTGCTaGCGGGTAACCTTTTTCTTCTGTAAGAAGAGTCTG | + |
|
Preference number: 4 (lower is better) Translates to: LSQGFLLQTAGC*RVTFFFCKKSL Trigger: CAGACTCTTCTTACAGAAGAAAAAGGTTACCCGCAAGCAGCCTGCTGTCTGTAAAAGGAAACCCTGCGAAAG 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000020668.15 ENSMUST00000109229.2 |
||
| CDS-3UTR CCA 90 bp | ACCTTTTTCTTCTGTAAGAAGAGTCTGGCAGTGTTGGGCACAGTGCTCCTGAACGTTCCATTGTTATTATaGAGGGTCACCAGTGTCTGT | + |
|
Preference number: 4 (lower is better) Translates to: TFFFCKKSLAVLGTVLLNVPLLL*RVTSVC Trigger: ACAGACACTGGTGACCCTCCATAATAACAATGGAAC...GTTCAGGAGCACTGTGCCCAACACTGCCAGACTCTTCTTACAGAAGAAAAAGGT 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000020668.15 ENSMUST00000109229.2 |
||
| CDS-3UTR CCA 90 bp | CCCAGAAAACTGGAACTCTTTTCTCAGTGGCTGTGGTCAGAACCTCCAATGAGGATACGTTCTCCTCGATaGTGTAGATATTTTCCTCAG | + |
|
Preference number: 4 (lower is better) Translates to: PRKLELFSQWLWSEPPMRIRSPR*CRYFPQ Trigger: CTGAGGAAAATATCTACACCATCGAGGAGAACGTAT...CCTCATTGGAGGTTCTGACCACAGCCACTGAGAAAAGAGTTCCAGTTTTCTGGG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000020668.15 ENSMUST00000109229.2 |
||
| CDS-3UTR TCA 90 bp | TGCCTAAGGTTCCCAAGTTATATAGTGTTAAGCATATGCCACCTGGCTTTTTCTCAGTGTCTGTGTCTCTaGACCATTTCTCTCCGTGGT | + |
|
Preference number: 4 (lower is better) Translates to: CLRFPSYIVLSICHLAFSQCLCL*TISLRG Trigger: ACCACGGAGAGAAATGGTTCAGAGACACAGACACTG...AGAAAAAGCCAGGTGGCATATGCTTAACACTATATAACTTGGGAACCTTAGGCA 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000020668.15 ENSMUST00000109229.2 |
||
| CDS-3UTR GCA 90 bp | AACTTATCACCCTCCTGCCTAAGGTTCCCAAGTTATATAGTGTTAAGCATATGCCTTGCAAGTAGTAGTTaGAGCAGCAGCAGGACACAG | + |
|
Preference number: 4 (lower is better) Translates to: NLSPSCLRFPSYIVLSICLASSS*SSSRTQ Trigger: CTGTGTCCTGCTGCTGCTGCAACTACTACTTGCAAG...GCATATGCTTAACACTATATAACTTGGGAACCTTAGGCAGGAGGGTGATAAGTT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000020668.15 ENSMUST00000109229.2 |
||
| CDS-3UTR CCA 90 bp | CCCAGAAAACTGGAACTCTTTTCTCAGTGGCTGTGGTCAGAACCTCCAATGAGGTTAGCTGGTATCTGCTaGATTTCTCAAACACATAAG | + |
|
Preference number: 4 (lower is better) Translates to: PRKLELFSQWLWSEPPMRLAGIC*ISQTHK Trigger: CTTATGTGTTTGAGAAATCCAGCAGATACCAGCTAA...CCTCATTGGAGGTTCTGACCACAGCCACTGAGAAAAGAGTTCCAGTTTTCTGGG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000109229.2 |
||
| CDS-3UTR TCA 90 bp | CTTAACAGAGGCAGAGGAGAGTCCTGTAGAGATACATGTTATAGAGAGGTAGCAGAGTCACATTCTTTATaGTCAGAGACACGTCTCCTT | + |
|
Preference number: 4 (lower is better) Translates to: LNRGRGESCRDTCYREVAESHSL*SETRLL Trigger: AAGGAGACGTGTCTCTGATCATAAAGAATGTGACTC...TGCTACCTCTCTATAACATGTATCTCTACAGGACTCTCCTCTGCCTCTGTTAAG 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000020668.15 ENSMUST00000109229.2 |
||
| CDS-3UTR CCA 90 bp | AACTTATCACCCTCCTGCCTAAGGTTCCCAAGTTATATAGTGTTAAGCATATGCAACCATTTCTCTCCGTaGTTAGGGTTCTTGGAGAAG | + |
|
Preference number: 4 (lower is better) Translates to: NLSPSCLRFPSYIVLSICNHFSP*LGFLEK Trigger: CTTCTCCAAGAACCCTAACCACGGAGAGAAATGGTT...GCATATGCTTAACACTATATAACTTGGGAACCTTAGGCAGGAGGGTGATAAGTT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000020668.15 ENSMUST00000109229.2 |
||
| CDS-3UTR CCA 90 bp | ACCTTTTTCTTCTGTAAGAAGAGTCTGGCAGTGTTGGGCACAGTGCTCCTGAACTTTCATCAGCCCATGTaGAAATTTTTGTTCCATTGT | + |
|
Preference number: 4 (lower is better) Translates to: TFFFCKKSLAVLGTVLLNFHQPM*KFLFHC Trigger: ACAATGGAACAAAAATTTCCACATGGGCTGATGAAA...GTTCAGGAGCACTGTGCCCAACACTGCCAGACTCTTCTTACAGAAGAAAAAGGT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 2 transcripts: ENSMUST00000020668.15 ENSMUST00000109229.2 |
||
| CDS-3UTR CCA 90 bp | CAATTTGGTGACGACTGTCCTCCCAAAGAATATTTTGCTGACTATATAGATTGCAACCATTTCTCTCCGTaGTTAGGGTTCTTGGAGAAG | + |
|
Preference number: 4 (lower is better) Translates to: QFGDDCPPKEYFADYIDCNHFSP*LGFLEK Trigger: CTTCTCCAAGAACCCTAACCACGGAGAGAAATGGTT...GCAATCTATATAGTCAGCAAAATATTCTTTGGGAGGACAGTCGTCACCAAATTG 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000020668.15 ENSMUST00000109229.2 |
||
| CDS-3UTR TCA 90 bp | CAATTTGGTGACGACTGTCCTCCCAAAGAATATTTTGCTGACTATATAGATTGCTTCTTTCATCAGTTCTaGGCAACTCGTTGGTACACT | + |
|
Preference number: 4 (lower is better) Translates to: QFGDDCPPKEYFADYIDCFFHQF*ATRWYT Trigger: AGTGTACCAACGAGTTGCTCAGAACTGATGAAAGAA...GCAATCTATATAGTCAGCAAAATATTCTTTGGGAGGACAGTCGTCACCAAATTG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020668.15 |
||
| CDS-3UTR TCA 90 bp | CAATTTGGTGACGACTGTCCTCCCAAAGAATATTTTGCTGACTATATAGATTGCGCAGTAGTACTCATTTaGATTCTCCACTTCATATAC | + |
|
Preference number: 4 (lower is better) Translates to: QFGDDCPPKEYFADYIDCAVVLI*ILHFIY Trigger: GTATATGAAGTGGAGAATTCAAATGAGTACTACTGC...GCAATCTATATAGTCAGCAAAATATTCTTTGGGAGGACAGTCGTCACCAAATTG 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000020668.15 ENSMUST00000109229.2 |
||
| CDS-3UTR CCA 90 bp | GAACAAAGCTACCTTTCTGCTCACTTAATATTTTCACTCGGGGTCTATTTAATTATACGTTCTCCTCGATaGTGTAGATATTTTCCTCAG | + |
|
Preference number: 4 (lower is better) Translates to: EQSYLSAHLIFSLGVYLIIRSPR*CRYFPQ Trigger: CTGAGGAAAATATCTACACCATCGAGGAGAACGTAT...AATTAAATAGACCCCGAGTGAAAATATTAAGTGAGCAGAAAGGTAGCTTTGTTC 37% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000020668.15 ENSMUST00000109229.2 |
||
| CDS GCA 90 bp | GTTCTCCTCGATGGTGTAGATATTTTCCTCAGAGCGAATCCTGACTaGTCCTGCATTTGCCAACCCTCCTGGAGGCAAGTTGGCCAGTGT | + |
|
Preference number: 5 (lower is better) Translates to: VLLDGVDIFLRANPD*SCICQPSWRQVGQC Trigger: ACACTGGCCAACTTGCCTCCAGGAGGGTTGGCAAATGCAGGAGCAGTCAGGATTCGCTCTGAGGAAAATATCTACACCATCGAGGAGAAC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000020668.15 ENSMUST00000109229.2 |
||
| CDS TCA 90 bp | ATACGTTCTCCTCGATGGTGTAGATATTTTCCTCAGAGCGAATCCTaGCTGCTCCTGCATTTGCCAACCCTCCTGGAGGCAAGTTGGCCA | + |
|
Preference number: 5 (lower is better) Translates to: IRSPRWCRYFPQSES*LLLHLPTLLEASWP Trigger: TGGCCAACTTGCCTCCAGGAGGGTTGGCAAATGCAGGAGCAGTCAGGATTCGCTCTGAGGAAAATATCTACACCATCGAGGAGAACGTAT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000020668.15 ENSMUST00000109229.2 |
||
| CDS-3UTR CAA 90 bp | CGCTTCTGCTCCAGCCTTCTGAGTGCTGGAATTAATTACTGGACTGCTCTGCCAAGCAGCAGGACACAGTaGAGGGTAAGACCTGAAAAC | + |
|
Preference number: 5 (lower is better) Translates to: RFCSSLLSAGINYWTALPSSRTQ*RVRPEN Trigger: GTTTTCAGGTCTTACCCTCAACTGTGTCCTGCTGCT...TGGCAGAGCAGTCCAGTAATTAATTCCAGCACTCAGAAGGCTGGAGCAGAAGCG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000020668.15 ENSMUST00000109229.2 |
||
| CDS TCA 90 bp | TGTCACATTTCTTTCATCAGTTCTGAGCAACTCGTTGGTACACTGTaGCCAAGGACAGAATCCCTTGCCCCAGCACATAGGCACAAGTGC | + |
|
Preference number: 5 (lower is better) Translates to: CHISFISSEQLVGTL*PRTESLAPAHRHKC Trigger: GCACTTGTGCCTATGTGCTGGGGCAAGGGATTCTGTCCTTGGTCACAGTGTACCAACGAGTTGCTCAGAACTGATGAAAGAAATGTGACA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020668.15 |
||
| CDS TCA 90 bp | GTTAGGGTTCTTGGAGAAGCTGTAGTAGAGTCCCCATGGGCAGTCTaGGCTGGAGTGACCTTGGCTGCTTTGATGTCTAATTTCAGTTCT | + |
|
Preference number: 5 (lower is better) Translates to: VRVLGEAVVESPWAV*AGVTLAALMSNFSS Trigger: AGAACTGAAATTAGACATCAAAGCAGCCAAGGTCACTCCAGCTCAGACTGCCCATGGGGACTCTACTACAGCTTCTCCAAGAACCCTAAC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000020668.15 ENSMUST00000109229.2 |
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| CDS CCA 90 bp | ATGATAAGTGCCAGGGTCAACCCAGCAGAGACTCCCACTCCAATGTaGATAGCAGTTCTGATCGTTTCTCCAGAGTCCTTAATTTCATCA | + |
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Preference number: 5 (lower is better) Translates to: MISARVNPAETPTPM*IAVLIVSPESLISS Trigger: TGATGAAATTAAGGACTCTGGAGAAACGATCAGAACTGCTATCCACATTGGAGTGGGAGTCTCTGCTGGGTTGACCCTGGCACTTATCAT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000020668.15 ENSMUST00000109229.2 |
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| CDS-3UTR CAA 90 bp | AACTTATCACCCTCCTGCCTAAGGTTCCCAAGTTATATAGTGTTAAGCATATGCAGCAGCAGGACACAGTaGAGGGTAAGACCTGAAAAC | + |
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Preference number: 5 (lower is better) Translates to: NLSPSCLRFPSYIVLSICSSRTQ*RVRPEN Trigger: GTTTTCAGGTCTTACCCTCAACTGTGTCCTGCTGCT...GCATATGCTTAACACTATATAACTTGGGAACCTTAGGCAGGAGGGTGATAAGTT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000020668.15 ENSMUST00000109229.2 |
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| CDS-3UTR CAA 90 bp | ACCTTTTTCTTCTGTAAGAAGAGTCTGGCAGTGTTGGGCACAGTGCTCCTGAACGAAATTTTTGTTCCATaGTTATTATGGAGGGTCACC | + |
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Preference number: 5 (lower is better) Translates to: TFFFCKKSLAVLGTVLLNEIFVP*LLWRVT Trigger: GGTGACCCTCCATAATAACAATGGAACAAAAATTTC...GTTCAGGAGCACTGTGCCCAACACTGCCAGACTCTTCTTACAGAAGAAAAAGGT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 2 transcripts: ENSMUST00000020668.15 ENSMUST00000109229.2 |
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| CDS TCA 90 bp | TCTCCTTTGTTGAGATCGCCCTTTAGCTGGTATCTGCTGGATTTCTaGTATGTCACATTTCTTTCATCAGTTCTGAGCAACTCGTTGGTA | + |
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Preference number: 5 (lower is better) Translates to: SPLLRSPFSWYLLDF*YVTFLSSVLSNSLV Trigger: TACCAACGAGTTGCTCAGAACTGATGAAAGAAATGTGACATATCAGAAATCCAGCAGATACCAGCTAAAGGGCGATCTCAACAAAGGAGA 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020668.15 |
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| CDS CCA 90 bp | TTAATTTCATCAGCCCATGTGGAAATTTTTGTTCCATTGTTATTATaGAGGGTCACCAGTGTCTGTGTCTCTGAACCATTTCTCTCCGTG | + |
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Preference number: 5 (lower is better) Translates to: LISSAHVEIFVPLLL*RVTSVCVSEPFLSV Trigger: CACGGAGAGAAATGGTTCAGAGACACAGACACTGGTGACCCTCCATAATAACAATGGAACAAAAATTTCCACATGGGCTGATGAAATTAA 41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000020668.15 ENSMUST00000109229.2 |
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| CDS-3UTR CAA 90 bp | TGCCTAAGGTTCCCAAGTTATATAGTGTTAAGCATATGCCACCTGGCTTTTTCTGAAATTTTTGTTCCATaGTTATTATGGAGGGTCACC | + |
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Preference number: 5 (lower is better) Translates to: CLRFPSYIVLSICHLAFSEIFVP*LLWRVT Trigger: GGTGACCCTCCATAATAACAATGGAACAAAAATTTC...AGAAAAAGCCAGGTGGCATATGCTTAACACTATATAACTTGGGAACCTTAGGCA 39% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 2 transcripts: ENSMUST00000020668.15 ENSMUST00000109229.2 |
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| CDS CAA 72 bp | AACTCGTTGGTACACTGTGACCAAGGACAGAATCCCTaGCCCCAGCACATAGGCACAAGTGCCCCAGGTGTA | + |
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Preference number: 6 (lower is better) Translates to: NSLVHCDQGQNP*PQHIGTSAPGV Trigger: TACACCTGGGGCACTTGTGCCTATGTGCTGGGGCAAGGGATTCTGTCCTTGGTCACAGTGTACCAACGAGTT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000020668.15 |
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| CDS TCA 72 bp | CCTCGATGGTGTAGATATTTTCCTCAGAGCGAATCCTaGCTGCTCCTGCATTTGCCAACCCTCCTGGAGGCA | + |
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Preference number: 6 (lower is better) Translates to: PRWCRYFPQSES*LLLHLPTLLEA Trigger: TGCCTCCAGGAGGGTTGGCAAATGCAGGAGCAGTCAGGATTCGCTCTGAGGAAAATATCTACACCATCGAGG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000020668.15 ENSMUST00000109229.2 |
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| CDS CCA 72 bp | GCCAGGGTCAACCCAGCAGAGACTCCCACTCCAATGTaGATAGCAGTTCTGATCGTTTCTCCAGAGTCCTTA | + |
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Preference number: 6 (lower is better) Translates to: ARVNPAETPTPM*IAVLIVSPESL Trigger: TAAGGACTCTGGAGAAACGATCAGAACTGCTATCCACATTGGAGTGGGAGTCTCTGCTGGGTTGACCCTGGC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000020668.15 ENSMUST00000109229.2 |
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| CDS TCA 72 bp | CTTGGAGAAGCTGTAGTAGAGTCCCCATGGGCAGTCTaGGCTGGAGTGACCTTGGCTGCTTTGATGTCTAAT | + |
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Preference number: 6 (lower is better) Translates to: LGEAVVESPWAV*AGVTLAALMSN Trigger: ATTAGACATCAAAGCAGCCAAGGTCACTCCAGCTCAGACTGCCCATGGGGACTCTACTACAGCTTCTCCAAG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000020668.15 ENSMUST00000109229.2 |
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| CDS TCA 72 bp | TCTTTCATCAGTTCTGAGCAACTCGTTGGTACACTGTaGCCAAGGACAGAATCCCTTGCCCCAGCACATAGG | + |
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Preference number: 6 (lower is better) Translates to: SFISSEQLVGTL*PRTESLAPAHR Trigger: CCTATGTGCTGGGGCAAGGGATTCTGTCCTTGGTCACAGTGTACCAACGAGTTGCTCAGAACTGATGAAAGA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020668.15 |
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| CDS GCA 72 bp | GATGGTGTAGATATTTTCCTCAGAGCGAATCCTGACTaGTCCTGCATTTGCCAACCCTCCTGGAGGCAAGTT | + |
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Preference number: 6 (lower is better) Translates to: DGVDIFLRANPD*SCICQPSWRQV Trigger: AACTTGCCTCCAGGAGGGTTGGCAAATGCAGGAGCAGTCAGGATTCGCTCTGAGGAAAATATCTACACCATC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000020668.15 ENSMUST00000109229.2 |
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| CDS CAA 72 bp | ACTGCTCCTGCATTTGCCAACCCTCCTGGAGGCAAGTaGGCCAGTGTAATAAGGCTCAAACTCGATAACTTC | + |
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Preference number: 6 (lower is better) Translates to: TAPAFANPPGGK*ASVIRLKLDNF Trigger: GAAGTTATCGAGTTTGAGCCTTATTACACTGGCCAACTTGCCTCCAGGAGGGTTGGCAAATGCAGGAGCAGT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000020668.15 ENSMUST00000109229.2 |
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| CDS CAA 90 bp | CGAATCCTGACTGCTCCTGCATTTGCCAACCCTCCTGGAGGCAAGTaGGCCAGTGTAATAAGGCTCAAACTCGATAACTTCTTTTTCTTA | + |
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Preference number: 6 (lower is better) Translates to: RILTAPAFANPPGGK*ASVIRLKLDNFFFL Trigger: TAAGAAAAAGAAGTTATCGAGTTTGAGCCTTATTACACTGGCCAACTTGCCTCCAGGAGGGTTGGCAAATGCAGGAGCAGTCAGGATTCG 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000020668.15 ENSMUST00000109229.2 |
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| CDS CAA 72 bp | TATGTCACATTTCTTTCATCAGTTCTGAGCAACTCGTaGGTACACTGTGACCAAGGACAGAATCCCTTGCCC | + |
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Preference number: 6 (lower is better) Translates to: YVTFLSSVLSNS*VHCDQGQNPLP Trigger: GGGCAAGGGATTCTGTCCTTGGTCACAGTGTACCAACGAGTTGCTCAGAACTGATGAAAGAAATGTGACATA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020668.15 |
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| CDS CAA 90 bp | TGGTCATCCAGAGTCACATTCTTTATGATCAGAGACACGTCTCCTTaGTTGAGATCGCCCTTTAGCTGGTATCTGCTGGATTTCTCAAAC | + |
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Preference number: 6 (lower is better) Translates to: WSSRVTFFMIRDTSP*LRSPFSWYLLDFSN Trigger: GTTTGAGAAATCCAGCAGATACCAGCTAAAGGGCGATCTCAACAAAGGAGACGTGTCTCTGATCATAAAGAATGTGACTCTGGATGACCA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000109229.2 |
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| CDS CAA 72 bp | TACCAACCTCAAACACATAAGCATTTTCCAATGACCTaGCAAGTAGTAGTTGCAGCAGCAGCAGGACACAGT | + |
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Preference number: 6 (lower is better) Translates to: YQPQTHKHFPMT*QVVVAAAAGHS Trigger: ACTGTGTCCTGCTGCTGCTGCAACTACTACTTGCAAGGTCATTGGAAAATGCTTATGTGTTTGAGGTTGGTA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020668.15 |
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| CDS CAA 72 bp | GTCACATTCTTTATGATCAGAGACACGTCTCCTTTGTaGAGATCGCCCTTTAGCTGGTATCTGCTGGATTTC | + |
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Preference number: 6 (lower is better) Translates to: VTFFMIRDTSPL*RSPFSWYLLDF Trigger: GAAATCCAGCAGATACCAGCTAAAGGGCGATCTCAACAAAGGAGACGTGTCTCTGATCATAAAGAATGTGAC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000020668.15 ENSMUST00000109229.2 |
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| CDS CAA 72 bp | AGAGTCACATTCTTTATGATCAGAGACACGTCTCCTTaGTTGAGATCGCCCTTTAGCTGGTATCTGCTGGAT | + |
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Preference number: 6 (lower is better) Translates to: RVTFFMIRDTSP*LRSPFSWYLLD Trigger: ATCCAGCAGATACCAGCTAAAGGGCGATCTCAACAAAGGAGACGTGTCTCTGATCATAAAGAATGTGACTCT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000020668.15 ENSMUST00000109229.2 |
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| CDS CAA 90 bp | TCATCCAGAGTCACATTCTTTATGATCAGAGACACGTCTCCTTTGTaGAGATCGCCCTTTAGCTGGTATCTGCTGGATTTCTCAAACACA | + |
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Preference number: 6 (lower is better) Translates to: SSRVTFFMIRDTSPL*RSPFSWYLLDFSNT Trigger: TGTGTTTGAGAAATCCAGCAGATACCAGCTAAAGGGCGATCTCAACAAAGGAGACGTGTCTCTGATCATAAAGAATGTGACTCTGGATGA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000109229.2 |
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| CDS CAA 90 bp | CCAGAGTCCTTAATTTCATCAGCCCATGTGGAAATTTTTGTTCCATaGTTATTATGGAGGGTCACCAGTGTCTGTGTCTCTGAACCATTT | + |
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Preference number: 6 (lower is better) Translates to: PESLISSAHVEIFVP*LLWRVTSVCVSEPF Trigger: AAATGGTTCAGAGACACAGACACTGGTGACCCTCCATAATAACAATGGAACAAAAATTTCCACATGGGCTGATGAAATTAAGGACTCTGG 41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000020668.15 ENSMUST00000109229.2 |
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| CDS CAA 72 bp | TTAATTTCATCAGCCCATGTGGAAATTTTTGTTCCATaGTTATTATGGAGGGTCACCAGTGTCTGTGTCTCT | + |
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Preference number: 6 (lower is better) Translates to: LISSAHVEIFVP*LLWRVTSVCVS Trigger: AGAGACACAGACACTGGTGACCCTCCATAATAACAATGGAACAAAAATTTCCACATGGGCTGATGAAATTAA 39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000020668.15 ENSMUST00000109229.2 |
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