Pregenerated sensors for HAVCR1 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000040405Ensembl transcript IDs: ENSMUST00000047568.5, ENSMUST00000081819.11, ENSMUST00000109223.8, ENSMUST00000109224.9
Found 71 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | AGACACGGAGGTGGTGCAGATACCAAAATTAGGATGATGTTAATCTaGGTTTTGAGTATACACAGTAGAGGGTTACCCTCTCTGCTGCAG | + |
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Preference number: 1 (lower is better) Translates to: RHGGGADTKIRMMLI*VLSIHSRGLPSLLQ Trigger: CTGCAGCAGAGAGGGTAACCCTCTACTGTGTATACTCAAAACTCAGATTAACATCATCCTAATTTTGGTATCTGCACCACCTCCGTGTCT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000047568.5 ENSMUST00000081819.11 ENSMUST00000109223.8 |
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| 3UTR TCA 90 bp | ATAACCATCTATATTGGCAGCAATAGACTCTCTTCTATTTATCTATaGGGGCACCATGCTCCCATGATTTTACCCATTGGGAAGGGTAGA | + |
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Preference number: 1 (lower is better) Translates to: ITIYIGSNRLSSIYL*GHHAPMILPIGKGR Trigger: TCTACCCTTCCCAATGGGTAAAATCATGGGAGCATGGTGCCCTCATAGATAAATAGAAGAGAGTCTATTGCTGCCAATATAGATGGTTAT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000047568.5 ENSMUST00000081819.11 ENSMUST00000109223.8 |
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| 3UTR TCA 90 bp | GCAATAGACTCTCTTCTATTTATCTATGAGGGCACCATGCTCCCATaGTTTTACCCATTGGGAAGGGTAGAAGTAACATTTCAAGAAAGT | + |
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Preference number: 1 (lower is better) Translates to: AIDSLLFIYEGTMLP*FYPLGRVEVTFQES Trigger: ACTTTCTTGAAATGTTACTTCTACCCTTCCCAATGGGTAAAATCATGGGAGCATGGTGCCCTCATAGATAAATAGAAGAGAGTCTATTGC 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000047568.5 ENSMUST00000081819.11 ENSMUST00000109223.8 |
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| 3UTR-3UTR TCA 90 bp | TCCCAACCTCTATCACACCTGCAAATAGGACTTCTCTCAGCAGAGAGCCTGTGTGGCACCATGCTCCCATaGTTTTACCCATTGGGAAGG | + |
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Preference number: 2 (lower is better) Translates to: SQPLSHLQIGLLSAESLCGTMLP*FYPLGR Trigger: CCTTCCCAATGGGTAAAATCATGGGAGCATGGTGCC...ACACAGGCTCTCTGCTGAGAGAAGTCCTATTTGCAGGTGTGATAGAGGTTGGGA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000047568.5 ENSMUST00000081819.11 ENSMUST00000109223.8 |
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| 3UTR-3UTR GCA 90 bp | CAATCCCTTGGTTCATTATTTTCCTCCACTGCTGTCTGCTGGTCCATATTCACCGGTTACCCTCTCTGCTaGAGCTGGAAGAACCAACAC | + |
|
Preference number: 2 (lower is better) Translates to: QSLGSLFSSTAVCWSIFTGYPLC*SWKNQH Trigger: GTGTTGGTTCTTCCAGCTGCAGCAGAGAGGGTAACC...GGTGAATATGGACCAGCAGACAGCAGTGGAGGAAAATAATGAACCAAGGGATTG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000047568.5 ENSMUST00000081819.11 ENSMUST00000109223.8 |
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| 3UTR-3UTR TCA 90 bp | TGCTGGTCCATATTCACCATGATAACCTCTCCTGACATAAAACACCTATCCTTAGGCACCATGCTCCCATaGTTTTACCCATTGGGAAGG | + |
|
Preference number: 2 (lower is better) Translates to: CWSIFTMITSPDIKHLSLGTMLP*FYPLGR Trigger: CCTTCCCAATGGGTAAAATCATGGGAGCATGGTGCC...TAAGGATAGGTGTTTTATGTCAGGAGAGGTTATCATGGTGAATATGGACCAGCA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000047568.5 ENSMUST00000081819.11 ENSMUST00000109223.8 |
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| 3UTR TCA 72 bp | GCAAATAGGACTTCTCTCAGCAGAGAGCCTGTGTCCTaGAGGCGCTCCTTCCCCTTTCATGTCTGCATTGTC | + |
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Preference number: 3 (lower is better) Translates to: ANRTSLSREPVS*RRSFPFHVCIV Trigger: GACAATGCAGACATGAAAGGGGAAGGAGCGCCTTCAGGACACAGGCTCTCTGCTGAGAGAAGTCCTATTTGC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000047568.5 ENSMUST00000081819.11 ENSMUST00000109223.8 |
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| 3UTR CCA 72 bp | GTATACACAGTAGAGGGTTACCCTCTCTGCTGCAGCTaGAAGAACCAACACAGAAAATCGCCTTGGCGCTGT | + |
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Preference number: 3 (lower is better) Translates to: VYTVEGYPLCCS*KNQHRKSPWRC Trigger: ACAGCGCCAAGGCGATTTTCTGTGTTGGTTCTTCCAGCTGCAGCAGAGAGGGTAACCCTCTACTGTGTATAC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000047568.5 ENSMUST00000081819.11 ENSMUST00000109223.8 |
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| 3UTR CCA 72 bp | TGCTGCAGCTGGAAGAACCAACACAGAAAATCGCCTTaGCGCTGTAATGGGTGTGACTCTATGACATCAGTG | + |
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Preference number: 3 (lower is better) Translates to: CCSWKNQHRKSP*RCNGCDSMTSV Trigger: CACTGATGTCATAGAGTCACACCCATTACAGCGCCAAGGCGATTTTCTGTGTTGGTTCTTCCAGCTGCAGCA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000047568.5 ENSMUST00000081819.11 ENSMUST00000109223.8 |
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| 3UTR GCA 72 bp | CAATCCCTTGGTTCATTATTTTCCTCCACTGCTGTCTaGTGGTCCATATTCACCATGATAACCTCTCCTGAC | + |
|
Preference number: 3 (lower is better) Translates to: QSLGSLFSSTAV*WSIFTMITSPD Trigger: GTCAGGAGAGGTTATCATGGTGAATATGGACCAGCAGACAGCAGTGGAGGAAAATAATGAACCAAGGGATTG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000047568.5 ENSMUST00000081819.11 ENSMUST00000109223.8 |
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| 3UTR CCA 72 bp | TCCCTTGGTTCATTATTTTCCTCCACTGCTGTCTGCTaGTCCATATTCACCATGATAACCTCTCCTGACATA | + |
|
Preference number: 3 (lower is better) Translates to: SLGSLFSSTAVC*SIFTMITSPDI Trigger: TATGTCAGGAGAGGTTATCATGGTGAATATGGACCAGCAGACAGCAGTGGAGGAAAATAATGAACCAAGGGA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000047568.5 ENSMUST00000081819.11 ENSMUST00000109223.8 |
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| 3UTR GCA 72 bp | ATGAACTCAATCCCTTGGTTCATTATTTTCCTCCACTaGTGTCTGCTGGTCCATATTCACCATGATAACCTC | + |
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Preference number: 3 (lower is better) Translates to: MNSIPWFIIFLH*CLLVHIHHDNL Trigger: GAGGTTATCATGGTGAATATGGACCAGCAGACAGCAGTGGAGGAAAATAATGAACCAAGGGATTGAGTTCAT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000047568.5 ENSMUST00000081819.11 ENSMUST00000109223.8 |
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| 3UTR CCA 72 bp | AGTGGAGTAGAATTAGCACTAATGAACTCAATCCCTTaGTTCATTATTTTCCTCCACTGCTGTCTGCTGGTC | + |
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Preference number: 3 (lower is better) Translates to: SGVELALMNSIP*FIIFLHCCLLV Trigger: GACCAGCAGACAGCAGTGGAGGAAAATAATGAACCAAGGGATTGAGTTCATTAGTGCTAATTCTACTCCACT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000047568.5 ENSMUST00000081819.11 ENSMUST00000109223.8 |
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| 3UTR TCA 72 bp | TATATTGGCAGCAATAGACTCTCTTCTATTTATCTATaGGGGCACCATGCTCCCATGATTTTACCCATTGGG | + |
|
Preference number: 3 (lower is better) Translates to: YIGSNRLSSIYL*GHHAPMILPIG Trigger: CCCAATGGGTAAAATCATGGGAGCATGGTGCCCTCATAGATAAATAGAAGAGAGTCTATTGCTGCCAATATA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000047568.5 ENSMUST00000081819.11 ENSMUST00000109223.8 |
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| 3UTR TCA 72 bp | TGTCTGCTGGTCCATATTCACCATGATAACCTCTCCTaGCATAAAACACCTATCCTTATCCTAAGATCAACC | + |
|
Preference number: 3 (lower is better) Translates to: CLLVHIHHDNLS*HKTPILILRST Trigger: GGTTGATCTTAGGATAAGGATAGGTGTTTTATGTCAGGAGAGGTTATCATGGTGAATATGGACCAGCAGACA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000047568.5 ENSMUST00000081819.11 ENSMUST00000109223.8 |
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| 3UTR TCA 72 bp | TCTCTTCTATTTATCTATGAGGGCACCATGCTCCCATaGTTTTACCCATTGGGAAGGGTAGAAGTAACATTT | + |
|
Preference number: 3 (lower is better) Translates to: SLLFIYEGTMLP*FYPLGRVEVTF Trigger: AAATGTTACTTCTACCCTTCCCAATGGGTAAAATCATGGGAGCATGGTGCCCTCATAGATAAATAGAAGAGA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000047568.5 ENSMUST00000081819.11 ENSMUST00000109223.8 |
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| CDS-3UTR TCA 90 bp | CACAGTAGAGGGTTACCCTCTCTGCTGCAGCTGGAAGAACCAACACAGAAAATCAAGTACATGGAAGTGTaGCAGGGTGACCCACCACCC | + |
|
Preference number: 4 (lower is better) Translates to: HSRGLPSLLQLEEPTQKIKYMEV*QGDPPP Trigger: GGGTGGTGGGTCACCCTGTCACACTTCCATGTACTT...GATTTTCTGTGTTGGTTCTTCCAGCTGCAGCAGAGAGGGTAACCCTCTACTGTG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000047568.5 ENSMUST00000081819.11 ENSMUST00000109223.8 |
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| CDS-3UTR TCA 90 bp | GTTACCCTCTCTGCTGCAGCTGGAAGAACCAACACAGAAAATCGCCTTGGCGCTTGCTCTTCTGATAGGTaGCACGATGTCCATTGGTCC | + |
|
Preference number: 4 (lower is better) Translates to: VTLSAAAGRTNTENRLGACSSDR*HDVHWS Trigger: GGACCAATGGACATCGTGTCACCTATCAGAAGAGCA...AGCGCCAAGGCGATTTTCTGTGTTGGTTCTTCCAGCTGCAGCAGAGAGGGTAAC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000047568.5 ENSMUST00000081819.11 ENSMUST00000109223.8 |
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| CDS-3UTR GCA 90 bp | GTTACCCTCTCTGCTGCAGCTGGAAGAACCAACACAGAAAATCGCCTTGGCGCTCTGAGGATGTCACAGTaGCATTCCAGTCTGGTTTGT | + |
|
Preference number: 4 (lower is better) Translates to: VTLSAAAGRTNTENRLGALRMSQ*HSSLVC Trigger: ACAAACCAGACTGGAATGGCACTGTGACATCCTCAG...AGCGCCAAGGCGATTTTCTGTGTTGGTTCTTCCAGCTGCAGCAGAGAGGGTAAC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000081819.11 ENSMUST00000109223.8 |
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| CDS-3UTR CCA 90 bp | AGTAGAGGGTTACCCTCTCTGCTGCAGCTGGAAGAACCAACACAGAAAATCGCCAGTTGTGGGTCTTCTTaGAGGACGTGTGGGAATCTC | + |
|
Preference number: 4 (lower is better) Translates to: SRGLPSLLQLEEPTQKIASCGSS*RTCGNL Trigger: GAGATTCCCACACGTCCTCCAAGAAGACCCACAACT...GGCGATTTTCTGTGTTGGTTCTTCCAGCTGCAGCAGAGAGGGTAACCCTCTACT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000047568.5 ENSMUST00000081819.11 ENSMUST00000109223.8 |
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| CDS-3UTR CCA 90 bp | TGCTGCAGCTGGAAGAACCAACACAGAAAATCGCCTTGGCGCTGTAATGGGTGTAGTTGTGGGTCTTCTTaGAGGACGTGTGGGAATCTC | + |
|
Preference number: 4 (lower is better) Translates to: CCSWKNQHRKSPWRCNGCSCGSS*RTCGNL Trigger: GAGATTCCCACACGTCCTCCAAGAAGACCCACAACT...ACACCCATTACAGCGCCAAGGCGATTTTCTGTGTTGGTTCTTCCAGCTGCAGCA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000047568.5 ENSMUST00000081819.11 ENSMUST00000109223.8 |
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| CDS-3UTR TCA 90 bp | CACAGTAGAGGGTTACCCTCTCTGCTGCAGCTGGAAGAACCAACACAGAAAATCTGCTCTTCTGATAGGTaGCACGATGTCCATTGGTCC | + |
|
Preference number: 4 (lower is better) Translates to: HSRGLPSLLQLEEPTQKICSSDR*HDVHWS Trigger: GGACCAATGGACATCGTGTCACCTATCAGAAGAGCA...GATTTTCTGTGTTGGTTCTTCCAGCTGCAGCAGAGAGGGTAACCCTCTACTGTG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000047568.5 ENSMUST00000081819.11 ENSMUST00000109223.8 |
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| CDS-3UTR GCA 90 bp | AGTAGAGGGTTACCCTCTCTGCTGCAGCTGGAAGAACCAACACAGAAAATCGCCTTAGTAGGGTTTTTCTaGGGCTTCCCTGGAGGGATT | + |
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Preference number: 4 (lower is better) Translates to: SRGLPSLLQLEEPTQKIALVGFF*GFPGGI Trigger: AATCCCTCCAGGGAAGCCGCAGAAAAACCCTACTAA...GGCGATTTTCTGTGTTGGTTCTTCCAGCTGCAGCAGAGAGGGTAACCCTCTACT 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000047568.5 ENSMUST00000081819.11 ENSMUST00000109223.8 |
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| CDS-3UTR CCA 90 bp | TGCTGCAGCTGGAAGAACCAACACAGAAAATCGCCTTGGCGCTGTAATGGGTGTTGTGTGTGTAGATGTTaGAGGAGTGGAGGTAGAGAC | + |
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Preference number: 4 (lower is better) Translates to: CCSWKNQHRKSPWRCNGCCVCRC*RSGGRD Trigger: GTCTCTACCTCCACTCCTCCAACATCTACACACACA...ACACCCATTACAGCGCCAAGGCGATTTTCTGTGTTGGTTCTTCCAGCTGCAGCA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000047568.5 ENSMUST00000081819.11 ENSMUST00000109223.8 |
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| CDS-3UTR TCA 90 bp | GTTACCCTCTCTGCTGCAGCTGGAAGAACCAACACAGAAAATCGCCTTGGCGCTAAGCAGTATGAGGCCTaGAATGAAGACTTGAATCTG | + |
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Preference number: 4 (lower is better) Translates to: VTLSAAAGRTNTENRLGAKQYEA*NEDLNL Trigger: CAGATTCAAGTCTTCATTTCAGGCCTCATACTGCTT...AGCGCCAAGGCGATTTTCTGTGTTGGTTCTTCCAGCTGCAGCAGAGAGGGTAAC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000047568.5 ENSMUST00000081819.11 ENSMUST00000109223.8 |
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| CDS-3UTR GCA 90 bp | TCCCAACCTCTATCACACCTGCAAATAGGACTTCTCTCAGCAGAGAGCCTGTGTCTGAGGATGTCACAGTaGCATTCCAGTCTGGTTTGT | + |
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Preference number: 4 (lower is better) Translates to: SQPLSHLQIGLLSAESLCLRMSQ*HSSLVC Trigger: ACAAACCAGACTGGAATGGCACTGTGACATCCTCAG...ACACAGGCTCTCTGCTGAGAGAAGTCCTATTTGCAGGTGTGATAGAGGTTGGGA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000081819.11 ENSMUST00000109223.8 |
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| CDS-3UTR TCA 90 bp | CTCTTCTATTTATCTATGAGGGCACCATGCTCCCATGATTTTACCCATTGGGAAAAGTACATGGAAGTGTaGCAGGGTGACCCACCACCC | + |
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Preference number: 4 (lower is better) Translates to: LFYLSMRAPCSHDFTHWEKYMEV*QGDPPP Trigger: GGGTGGTGGGTCACCCTGTCACACTTCCATGTACTT...TTCCCAATGGGTAAAATCATGGGAGCATGGTGCCCTCATAGATAAATAGAAGAG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000047568.5 ENSMUST00000081819.11 ENSMUST00000109223.8 |
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| CDS-3UTR TCA 90 bp | CACAGTAGAGGGTTACCCTCTCTGCTGCAGCTGGAAGAACCAACACAGAAAATCATGTGTGGATCTTGTTaGAATAGTCGTGGGTCTTCC | + |
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Preference number: 4 (lower is better) Translates to: HSRGLPSLLQLEEPTQKIMCGSC*NSRGSS Trigger: GGAAGACCCACGACTATTTCAACAAGATCCACACAT...GATTTTCTGTGTTGGTTCTTCCAGCTGCAGCAGAGAGGGTAACCCTCTACTGTG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000047568.5 ENSMUST00000081819.11 ENSMUST00000109223.8 |
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| CDS-3UTR TCA 90 bp | ATACACAGTAGAGGGTTACCCTCTCTGCTGCAGCTGGAAGAACCAACACAGAAAGTGGGTTCTGGTTTGTaGGTCCATGTGTGTGTAGAT | + |
|
Preference number: 4 (lower is better) Translates to: IHSRGLPSLLQLEEPTQKVGSGL*VHVCVD Trigger: ATCTACACACACATGGACTCACAAACCAGAACCCAC...TTTCTGTGTTGGTTCTTCCAGCTGCAGCAGAGAGGGTAACCCTCTACTGTGTAT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000047568.5 |
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| CDS-3UTR TCA 90 bp | TCCCAACCTCTATCACACCTGCAAATAGGACTTCTCTCAGCAGAGAGCCTGTGTAAGCAGTATGAGGCCTaGAATGAAGACTTGAATCTG | + |
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Preference number: 4 (lower is better) Translates to: SQPLSHLQIGLLSAESLCKQYEA*NEDLNL Trigger: CAGATTCAAGTCTTCATTTCAGGCCTCATACTGCTT...ACACAGGCTCTCTGCTGAGAGAAGTCCTATTTGCAGGTGTGATAGAGGTTGGGA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000047568.5 ENSMUST00000081819.11 ENSMUST00000109223.8 |
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| CDS-3UTR GCA 90 bp | GTGCTTCTAAATTCAGGAGGCCCCTCACACCAACTTTTAATTCCTATCCCTCTCTTAGTAGGGTTTTTCTaGGGCTTCCCTGGAGGGATT | + |
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Preference number: 4 (lower is better) Translates to: VLLNSGGPSHQLLIPIPLLVGFF*GFPGGI Trigger: AATCCCTCCAGGGAAGCCGCAGAAAAACCCTACTAA...GAGAGGGATAGGAATTAAAAGTTGGTGTGAGGGGCCTCCTGAATTTAGAAGCAC 47% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 3 transcripts: ENSMUST00000047568.5 ENSMUST00000081819.11 ENSMUST00000109223.8 |
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| CDS-3UTR TCA 90 bp | ATACACAGTAGAGGGTTACCCTCTCTGCTGCAGCTGGAAGAACCAACACAGAAAAAGCAGTATGAGGCCTaGAATGAAGACTTGAATCTG | + |
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Preference number: 4 (lower is better) Translates to: IHSRGLPSLLQLEEPTQKKQYEA*NEDLNL Trigger: CAGATTCAAGTCTTCATTTCAGGCCTCATACTGCTT...TTTCTGTGTTGGTTCTTCCAGCTGCAGCAGAGAGGGTAACCCTCTACTGTGTAT 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000047568.5 ENSMUST00000081819.11 ENSMUST00000109223.8 |
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| CDS-3UTR TCA 90 bp | AGTAGAGGGTTACCCTCTCTGCTGCAGCTGGAAGAACCAACACAGAAAATCGCCCAAATAAGTGTATTTTaGCAAGCAGAAGATGGGCAT | + |
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Preference number: 4 (lower is better) Translates to: SRGLPSLLQLEEPTQKIAQISVF*QAEDGH Trigger: ATGCCCATCTTCTGCTTGTCAAAATACACTTATTTG...GGCGATTTTCTGTGTTGGTTCTTCCAGCTGCAGCAGAGAGGGTAACCCTCTACT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000047568.5 ENSMUST00000081819.11 ENSMUST00000109223.8 |
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| CDS-3UTR TCA 90 bp | CAGAATCAAGTGCTTCTAAATTCAGGAGGCCCCTCACACCAACTTTTAATTCCTTGCTCTTCTGATAGGTaGCACGATGTCCATTGGTCC | + |
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Preference number: 4 (lower is better) Translates to: QNQVLLNSGGPSHQLLIPCSSDR*HDVHWS Trigger: GGACCAATGGACATCGTGTCACCTATCAGAAGAGCA...AGGAATTAAAAGTTGGTGTGAGGGGCCTCCTGAATTTAGAAGCACTTGATTCTG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000047568.5 ENSMUST00000081819.11 ENSMUST00000109223.8 |
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| CDS-3UTR TCA 90 bp | AGTAGAGGGTTACCCTCTCTGCTGCAGCTGGAAGAACCAACACAGAAAATCGCCTGGTTTAACTTGCAATaGAAAGGTCACTTTCTGATC | + |
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Preference number: 4 (lower is better) Translates to: SRGLPSLLQLEEPTQKIAWFNLQ*KGHFLI Trigger: GATCAGAAAGTGACCTTTTCATTGCAAGTTAAACCA...GGCGATTTTCTGTGTTGGTTCTTCCAGCTGCAGCAGAGAGGGTAACCCTCTACT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000047568.5 ENSMUST00000081819.11 ENSMUST00000109223.8 |
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| CDS-3UTR TCA 90 bp | GTGCTTCTAAATTCAGGAGGCCCCTCACACCAACTTTTAATTCCTATCCCTCTCATGTGTGGATCTTGTTaGAATAGTCGTGGGTCTTCC | + |
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Preference number: 4 (lower is better) Translates to: VLLNSGGPSHQLLIPIPLMCGSC*NSRGSS Trigger: GGAAGACCCACGACTATTTCAACAAGATCCACACAT...GAGAGGGATAGGAATTAAAAGTTGGTGTGAGGGGCCTCCTGAATTTAGAAGCAC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000047568.5 ENSMUST00000081819.11 ENSMUST00000109223.8 |
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| CDS-3UTR TCA 90 bp | CACAGTAGAGGGTTACCCTCTCTGCTGCAGCTGGAAGAACCAACACAGAAAATCCAAATAAGTGTATTTTaGCAAGCAGAAGATGGGCAT | + |
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Preference number: 4 (lower is better) Translates to: HSRGLPSLLQLEEPTQKIQISVF*QAEDGH Trigger: ATGCCCATCTTCTGCTTGTCAAAATACACTTATTTG...GATTTTCTGTGTTGGTTCTTCCAGCTGCAGCAGAGAGGGTAACCCTCTACTGTG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000047568.5 ENSMUST00000081819.11 ENSMUST00000109223.8 |
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| CDS-3UTR GCA 90 bp | TGCTGCAGCTGGAAGAACCAACACAGAAAATCGCCTTGGCGCTGTAATGGGTGTATCTCTGGTTTAACTTaGAATGAAAAGGTCACTTTC | + |
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Preference number: 4 (lower is better) Translates to: CCSWKNQHRKSPWRCNGCISGLT*NEKVTF Trigger: GAAAGTGACCTTTTCATTGCAAGTTAAACCAGAGAT...ACACCCATTACAGCGCCAAGGCGATTTTCTGTGTTGGTTCTTCCAGCTGCAGCA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000047568.5 ENSMUST00000081819.11 ENSMUST00000109223.8 |
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| CDS-3UTR GCA 90 bp | AGTAGAGGGTTACCCTCTCTGCTGCAGCTGGAAGAACCAACACAGAAAATCGCCATCTCTGGTTTAACTTaGAATGAAAAGGTCACTTTC | + |
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Preference number: 4 (lower is better) Translates to: SRGLPSLLQLEEPTQKIAISGLT*NEKVTF Trigger: GAAAGTGACCTTTTCATTGCAAGTTAAACCAGAGAT...GGCGATTTTCTGTGTTGGTTCTTCCAGCTGCAGCAGAGAGGGTAACCCTCTACT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000047568.5 ENSMUST00000081819.11 ENSMUST00000109223.8 |
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| CDS-3UTR CCA 90 bp | CAGAATCAAGTGCTTCTAAATTCAGGAGGCCCCTCACACCAACTTTTAATTCCTTGTGTGTGTAGATGTTaGAGGAGTGGAGGTAGAGAC | + |
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Preference number: 4 (lower is better) Translates to: QNQVLLNSGGPSHQLLIPCVCRC*RSGGRD Trigger: GTCTCTACCTCCACTCCTCCAACATCTACACACACA...AGGAATTAAAAGTTGGTGTGAGGGGCCTCCTGAATTTAGAAGCACTTGATTCTG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000047568.5 ENSMUST00000081819.11 ENSMUST00000109223.8 |
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| CDS-3UTR TCA 90 bp | ATACACAGTAGAGGGTTACCCTCTCTGCTGCAGCTGGAAGAACCAACACAGAAACAAATAAGTGTATTTTaGCAAGCAGAAGATGGGCAT | + |
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Preference number: 4 (lower is better) Translates to: IHSRGLPSLLQLEEPTQKQISVF*QAEDGH Trigger: ATGCCCATCTTCTGCTTGTCAAAATACACTTATTTG...TTTCTGTGTTGGTTCTTCCAGCTGCAGCAGAGAGGGTAACCCTCTACTGTGTAT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000047568.5 ENSMUST00000081819.11 ENSMUST00000109223.8 |
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| CDS-3UTR TCA 90 bp | CAATCCCTTGGTTCATTATTTTCCTCCACTGCTGTCTGCTGGTCCATATTCACCGAAAAGGTCACTTTCTaGTCATTAAACCATCCAGGA | + |
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Preference number: 4 (lower is better) Translates to: QSLGSLFSSTAVCWSIFTEKVTF*SLNHPG Trigger: TCCTGGATGGTTTAATGATCAGAAAGTGACCTTTTC...GGTGAATATGGACCAGCAGACAGCAGTGGAGGAAAATAATGAACCAAGGGATTG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000047568.5 ENSMUST00000081819.11 ENSMUST00000109223.8 |
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| CDS-3UTR TCA 90 bp | AGCACTAATGAACTCAATCCCTTGGTTCATTATTTTCCTCCACTGCTGTCTGCTATGTGTGGATCTTGTTaGAATAGTCGTGGGTCTTCC | + |
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Preference number: 4 (lower is better) Translates to: STNELNPLVHYFPPLLSAMCGSC*NSRGSS Trigger: GGAAGACCCACGACTATTTCAACAAGATCCACACAT...AGCAGACAGCAGTGGAGGAAAATAATGAACCAAGGGATTGAGTTCATTAGTGCT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000047568.5 ENSMUST00000081819.11 ENSMUST00000109223.8 |
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| CDS-3UTR GCA 90 bp | CTCTTCTATTTATCTATGAGGGCACCATGCTCCCATGATTTTACCCATTGGGAAACAACCGCTGCGTTCTaGAAAGCTTCAATCTTAGAG | + |
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Preference number: 4 (lower is better) Translates to: LFYLSMRAPCSHDFTHWETTAAF*KASILE Trigger: CTCTAAGATTGAAGCTTTGCAGAACGCAGCGGTTGT...TTCCCAATGGGTAAAATCATGGGAGCATGGTGCCCTCATAGATAAATAGAAGAG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000047568.5 ENSMUST00000081819.11 ENSMUST00000109223.8 |
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| CDS-3UTR CCA 90 bp | TGCTGGTCCATATTCACCATGATAACCTCTCCTGACATAAAACACCTATCCTTATGTGTGTGTAGATGTTaGAGGAGTGGAGGTAGAGAC | + |
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Preference number: 4 (lower is better) Translates to: CWSIFTMITSPDIKHLSLCVCRC*RSGGRD Trigger: GTCTCTACCTCCACTCCTCCAACATCTACACACACA...TAAGGATAGGTGTTTTATGTCAGGAGAGGTTATCATGGTGAATATGGACCAGCA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000047568.5 ENSMUST00000081819.11 ENSMUST00000109223.8 |
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| CDS-3UTR GCA 90 bp | ATACACAGTAGAGGGTTACCCTCTCTGCTGCAGCTGGAAGAACCAACACAGAAAATCTCTGGTTTAACTTaGAATGAAAAGGTCACTTTC | + |
|
Preference number: 4 (lower is better) Translates to: IHSRGLPSLLQLEEPTQKISGLT*NEKVTF Trigger: GAAAGTGACCTTTTCATTGCAAGTTAAACCAGAGAT...TTTCTGTGTTGGTTCTTCCAGCTGCAGCAGAGAGGGTAACCCTCTACTGTGTAT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000047568.5 ENSMUST00000081819.11 ENSMUST00000109223.8 |
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| CDS-3UTR GCA 90 bp | TGGTCCATATTCACCATGATAACCTCTCCTGACATAAAACACCTATCCTTATCCACAACCGCTGCGTTCTaGAAAGCTTCAATCTTAGAG | + |
|
Preference number: 4 (lower is better) Translates to: WSIFTMITSPDIKHLSLSTTAAF*KASILE Trigger: CTCTAAGATTGAAGCTTTGCAGAACGCAGCGGTTGT...GGATAAGGATAGGTGTTTTATGTCAGGAGAGGTTATCATGGTGAATATGGACCA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000047568.5 ENSMUST00000081819.11 ENSMUST00000109223.8 |
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| CDS-3UTR GCA 90 bp | TGCTGGTCCATATTCACCATGATAACCTCTCCTGACATAAAACACCTATCCTTAACAACCGCTGCGTTCTaGAAAGCTTCAATCTTAGAG | + |
|
Preference number: 4 (lower is better) Translates to: CWSIFTMITSPDIKHLSLTTAAF*KASILE Trigger: CTCTAAGATTGAAGCTTTGCAGAACGCAGCGGTTGT...TAAGGATAGGTGTTTTATGTCAGGAGAGGTTATCATGGTGAATATGGACCAGCA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000047568.5 ENSMUST00000081819.11 ENSMUST00000109223.8 |
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| CDS-3UTR CCA 90 bp | CTCTTCTATTTATCTATGAGGGCACCATGCTCCCATGATTTTACCCATTGGGAAAAATGTAGTGGGTTCTaGTTTGTGAGTCCATGTGTG | + |
|
Preference number: 4 (lower is better) Translates to: LFYLSMRAPCSHDFTHWEKCSGF*FVSPCV Trigger: CACACATGGACTCACAAACCAGAACCCACTACATTT...TTCCCAATGGGTAAAATCATGGGAGCATGGTGCCCTCATAGATAAATAGAAGAG 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000047568.5 |
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| CDS-3UTR TCA 90 bp | AGCACTAATGAACTCAATCCCTTGGTTCATTATTTTCCTCCACTGCTGTCTGCTGAAAAGGTCACTTTCTaGTCATTAAACCATCCAGGA | + |
|
Preference number: 4 (lower is better) Translates to: STNELNPLVHYFPPLLSAEKVTF*SLNHPG Trigger: TCCTGGATGGTTTAATGATCAGAAAGTGACCTTTTC...AGCAGACAGCAGTGGAGGAAAATAATGAACCAAGGGATTGAGTTCATTAGTGCT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000047568.5 ENSMUST00000081819.11 ENSMUST00000109223.8 |
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| CDS-3UTR TCA 90 bp | TGCTGGTCCATATTCACCATGATAACCTCTCCTGACATAAAACACCTATCCTTAGAAAAGGTCACTTTCTaGTCATTAAACCATCCAGGA | + |
|
Preference number: 4 (lower is better) Translates to: CWSIFTMITSPDIKHLSLEKVTF*SLNHPG Trigger: TCCTGGATGGTTTAATGATCAGAAAGTGACCTTTTC...TAAGGATAGGTGTTTTATGTCAGGAGAGGTTATCATGGTGAATATGGACCAGCA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000047568.5 ENSMUST00000081819.11 ENSMUST00000109223.8 |
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| CDS-3UTR TCA 90 bp | CTCTTCTATTTATCTATGAGGGCACCATGCTCCCATGATTTTACCCATTGGGAATGGTTTAACTTGCAATaGAAAGGTCACTTTCTGATC | + |
|
Preference number: 4 (lower is better) Translates to: LFYLSMRAPCSHDFTHWEWFNLQ*KGHFLI Trigger: GATCAGAAAGTGACCTTTTCATTGCAAGTTAAACCA...TTCCCAATGGGTAAAATCATGGGAGCATGGTGCCCTCATAGATAAATAGAAGAG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000047568.5 ENSMUST00000081819.11 ENSMUST00000109223.8 |
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| CDS-3UTR TCA 90 bp | TGCTGGTCCATATTCACCATGATAACCTCTCCTGACATAAAACACCTATCCTTATGGTTTAACTTGCAATaGAAAGGTCACTTTCTGATC | + |
|
Preference number: 4 (lower is better) Translates to: CWSIFTMITSPDIKHLSLWFNLQ*KGHFLI Trigger: GATCAGAAAGTGACCTTTTCATTGCAAGTTAAACCA...TAAGGATAGGTGTTTTATGTCAGGAGAGGTTATCATGGTGAATATGGACCAGCA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000047568.5 ENSMUST00000081819.11 ENSMUST00000109223.8 |
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| CDS-3UTR CAA 90 bp | GTTACCCTCTCTGCTGCAGCTGGAAGAACCAACACAGAAAATCGCCTTGGCGCTAGCAGAAGATGGGCATaGCCCTCGGCCCCAACATGT | + |
|
Preference number: 5 (lower is better) Translates to: VTLSAAAGRTNTENRLGASRRWA*PSAPTC Trigger: ACATGTTGGGGCCGAGGGCAATGCCCATCTTCTGCT...AGCGCCAAGGCGATTTTCTGTGTTGGTTCTTCCAGCTGCAGCAGAGAGGGTAAC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000047568.5 ENSMUST00000081819.11 ENSMUST00000109223.8 |
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| CDS-3UTR CAA 90 bp | AGTAGAGGGTTACCCTCTCTGCTGCAGCTGGAAGAACCAACACAGAAAATCGCCAGCAGAAGATGGGCATaGCCCTCGGCCCCAACATGT | + |
|
Preference number: 5 (lower is better) Translates to: SRGLPSLLQLEEPTQKIASRRWA*PSAPTC Trigger: ACATGTTGGGGCCGAGGGCAATGCCCATCTTCTGCT...GGCGATTTTCTGTGTTGGTTCTTCCAGCTGCAGCAGAGAGGGTAACCCTCTACT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000047568.5 ENSMUST00000081819.11 ENSMUST00000109223.8 |
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| CDS TCA 90 bp | CTTCCCTGGAGGGATTGCTTCAGTGTGATTACTCCAGGTATCTCCTaGGGATGTCACAGTGCCATTCCAGTCTGTAGGAGTATGGGATGG | + |
|
Preference number: 5 (lower is better) Translates to: LPWRDCFSVITPGIS*GCHSAIPVCRSMGW Trigger: CCATCCCATACTCCTACAGACTGGAATGGCACTGTGACATCCTCAGGAGATACCTGGAGTAATCACACTGAAGCAATCCCTCCAGGGAAG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000047568.5 |
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| CDS CCA 90 bp | GTATCTCCTGAGGATGTCACAGTGCCATTCCAGTCTGTAGGAGTATaGGATGGGATTCCTGTCACCTCAGCTGTTGTCTCATGGGGACAA | + |
|
Preference number: 5 (lower is better) Translates to: VSPEDVTVPFQSVGV*DGIPVTSAVVSWGQ Trigger: TTGTCCCCATGAGACAACAGCTGAGGTGACAGGAATCCCATCCCATACTCCTACAGACTGGAATGGCACTGTGACATCCTCAGGAGATAC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000047568.5 |
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| CDS-3UTR CAA 90 bp | GTGCTTCTAAATTCAGGAGGCCCCTCACACCAACTTTTAATTCCTATCCCTCTCAGCAGAAGATGGGCATaGCCCTCGGCCCCAACATGT | + |
|
Preference number: 5 (lower is better) Translates to: VLLNSGGPSHQLLIPIPLSRRWA*PSAPTC Trigger: ACATGTTGGGGCCGAGGGCAATGCCCATCTTCTGCT...GAGAGGGATAGGAATTAAAAGTTGGTGTGAGGGGCCTCCTGAATTTAGAAGCAC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 3 transcripts: ENSMUST00000047568.5 ENSMUST00000081819.11 ENSMUST00000109223.8 |
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| CDS-3UTR CAA 90 bp | ATACACAGTAGAGGGTTACCCTCTCTGCTGCAGCTGGAAGAACCAACACAGAAAGCTTCCCTGGAGGGATaGCTTCAGTGTGATTACTCC | + |
|
Preference number: 5 (lower is better) Translates to: IHSRGLPSLLQLEEPTQKASLEG*LQCDYS Trigger: GGAGTAATCACACTGAAGCAATCCCTCCAGGGAAGC...TTTCTGTGTTGGTTCTTCCAGCTGCAGCAGAGAGGGTAACCCTCTACTGTGTAT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000047568.5 ENSMUST00000081819.11 ENSMUST00000109223.8 |
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| CDS-3UTR CAA 90 bp | TGCTGCAGCTGGAAGAACCAACACAGAAAATCGCCTTGGCGCTGTAATGGGTGTGTGACACGATGTCCATaGGTCCAAATAAGTGTATTT | + |
|
Preference number: 5 (lower is better) Translates to: CCSWKNQHRKSPWRCNGCVTRCP*VQISVF Trigger: AAATACACTTATTTGGACCAATGGACATCGTGTCAC...ACACCCATTACAGCGCCAAGGCGATTTTCTGTGTTGGTTCTTCCAGCTGCAGCA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000047568.5 ENSMUST00000081819.11 ENSMUST00000109223.8 |
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| CDS-3UTR CAA 90 bp | CTCTTCTATTTATCTATGAGGGCACCATGCTCCCATGATTTTACCCATTGGGAAGCTTCCCTGGAGGGATaGCTTCAGTGTGATTACTCC | + |
|
Preference number: 5 (lower is better) Translates to: LFYLSMRAPCSHDFTHWEASLEG*LQCDYS Trigger: GGAGTAATCACACTGAAGCAATCCCTCCAGGGAAGC...TTCCCAATGGGTAAAATCATGGGAGCATGGTGCCCTCATAGATAAATAGAAGAG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000047568.5 ENSMUST00000081819.11 ENSMUST00000109223.8 |
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| CDS-3UTR CAA 90 bp | TCCCAACCTCTATCACACCTGCAAATAGGACTTCTCTCAGCAGAGAGCCTGTGTCCAAATAAGTGTATTTaGACAAGCAGAAGATGGGCA | + |
|
Preference number: 5 (lower is better) Translates to: SQPLSHLQIGLLSAESLCPNKCI*TSRRWA Trigger: TGCCCATCTTCTGCTTGTCAAAATACACTTATTTGG...ACACAGGCTCTCTGCTGAGAGAAGTCCTATTTGCAGGTGTGATAGAGGTTGGGA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000047568.5 ENSMUST00000081819.11 ENSMUST00000109223.8 |
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| CDS-3UTR CAA 90 bp | CACAGTAGAGGGTTACCCTCTCTGCTGCAGCTGGAAGAACCAACACAGAAAATCCCAAATAAGTGTATTTaGACAAGCAGAAGATGGGCA | + |
|
Preference number: 5 (lower is better) Translates to: HSRGLPSLLQLEEPTQKIPNKCI*TSRRWA Trigger: TGCCCATCTTCTGCTTGTCAAAATACACTTATTTGG...GATTTTCTGTGTTGGTTCTTCCAGCTGCAGCAGAGAGGGTAACCCTCTACTGTG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000047568.5 ENSMUST00000081819.11 ENSMUST00000109223.8 |
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| CDS-3UTR CAA 90 bp | ATACACAGTAGAGGGTTACCCTCTCTGCTGCAGCTGGAAGAACCAACACAGAAAGTGACACGATGTCCATaGGTCCAAATAAGTGTATTT | + |
|
Preference number: 5 (lower is better) Translates to: IHSRGLPSLLQLEEPTQKVTRCP*VQISVF Trigger: AAATACACTTATTTGGACCAATGGACATCGTGTCAC...TTTCTGTGTTGGTTCTTCCAGCTGCAGCAGAGAGGGTAACCCTCTACTGTGTAT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000047568.5 ENSMUST00000081819.11 ENSMUST00000109223.8 |
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| CDS-3UTR CAA 90 bp | CTCTTCTATTTATCTATGAGGGCACCATGCTCCCATGATTTTACCCATTGGGAAGTGACACGATGTCCATaGGTCCAAATAAGTGTATTT | + |
|
Preference number: 5 (lower is better) Translates to: LFYLSMRAPCSHDFTHWEVTRCP*VQISVF Trigger: AAATACACTTATTTGGACCAATGGACATCGTGTCAC...TTCCCAATGGGTAAAATCATGGGAGCATGGTGCCCTCATAGATAAATAGAAGAG 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000047568.5 ENSMUST00000081819.11 ENSMUST00000109223.8 |
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| CDS CCA 72 bp | TGTCACAGTGCCATTCCAGTCTGTAGGAGTATGGGATaGGATTCCTGTCACCTCAGCTGTTGTCTCATGGGG | + |
|
Preference number: 6 (lower is better) Translates to: CHSAIPVCRSMG*DSCHLSCCLMG Trigger: CCCCATGAGACAACAGCTGAGGTGACAGGAATCCCATCCCATACTCCTACAGACTGGAATGGCACTGTGACA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000047568.5 |
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| CDS CCA 72 bp | GAGGATGTCACAGTGCCATTCCAGTCTGTAGGAGTATaGGATGGGATTCCTGTCACCTCAGCTGTTGTCTCA | + |
|
Preference number: 6 (lower is better) Translates to: EDVTVPFQSVGV*DGIPVTSAVVS Trigger: TGAGACAACAGCTGAGGTGACAGGAATCCCATCCCATACTCCTACAGACTGGAATGGCACTGTGACATCCTC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000047568.5 |
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| CDS GCA 72 bp | TGTGATTACTCCAGGTATCTCCTGAGGATGTCACAGTaGCATTCCAGTCTGGTTTGTGAGTCCATGTGTGTG | + |
|
Preference number: 6 (lower is better) Translates to: CDYSRYLLRMSQ*HSSLVCESMCV Trigger: CACACACATGGACTCACAAACCAGACTGGAATGGCACTGTGACATCCTCAGGAGATACCTGGAGTAATCACA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000081819.11 ENSMUST00000109223.8 |
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| CDS CCA 72 bp | AGCTGTTGTCTCATGGGGACAAAATGTAGTGGGTTCTaGTTTGTGAGTCCATGTGTGTGTAGATGTTGGAGG | + |
|
Preference number: 6 (lower is better) Translates to: SCCLMGTKCSGF*FVSPCVCRCWR Trigger: CCTCCAACATCTACACACACATGGACTCACAAACCAGAACCCACTACATTTTGTCCCCATGAGACAACAGCT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000047568.5 |
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| CDS CCA 72 bp | ATTGGTCCAAATAAGTGTATTTTGACAAGCAGAAGATaGGCATTGCCCTCGGCCCCAACATGTCGTTGTGAT | + |
|
Preference number: 6 (lower is better) Translates to: IGPNKCILTSRR*ALPSAPTCRCD Trigger: ATCACAACGACATGTTGGGGCCGAGGGCAATGCCCATCTTCTGCTTGTCAAAATACACTTATTTGGACCAAT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENSMUST00000047568.5 ENSMUST00000081819.11 ENSMUST00000109223.8 ENSMUST00000109224.9 |
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| CDS TCA 72 bp | TGGAGGACGTGTGGGAATCTCTGGTTTAACTTGCAATaGAAAGGTCACTTTCTGATCATTAAACCATCCAGG | + |
|
Preference number: 6 (lower is better) Translates to: WRTCGNLWFNLQ*KGHFLIIKPSR Trigger: CCTGGATGGTTTAATGATCAGAAAGTGACCTTTTCATTGCAAGTTAAACCAGAGATTCCCACACGTCCTCCA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000047568.5 ENSMUST00000081819.11 ENSMUST00000109223.8 ENSMUST00000109224.9 |
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