Pregenerated sensors for HAUS4 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000022177Ensembl transcript IDs: ENSMUST00000022784.9, ENSMUST00000226358.2, ENSMUST00000226832.2
Found 57 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | AGGGTTTTAAGCAAGTGTCCCCATATTCCCTTGTGGTGGTGGTGGTaGTCCACTGAGCAAGAAGAGAAGGTGGCCATGGAGAATTCACGC | + |
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Preference number: 1 (lower is better) Translates to: RVLSKCPHIPLWWWW*STEQEEKVAMENSR Trigger: GCGTGAATTCTCCATGGCCACCTTCTCTTCTTGCTCAGTGGACCACCACCACCACCACAAGGGAATATGGGGACACTTGCTTAAAACCCT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000022784.9 |
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| 3UTR CCA 90 bp | GAAGATTGCAGGGTTTTAAGCAAGTGTCCCCATATTCCCTTGTGGTaGTGGTGGTGGTCCACTGAGCAAGAAGAGAAGGTGGCCATGGAG | + |
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Preference number: 1 (lower is better) Translates to: EDCRVLSKCPHIPLW*WWWSTEQEEKVAME Trigger: CTCCATGGCCACCTTCTCTTCTTGCTCAGTGGACCACCACCACCACCACAAGGGAATATGGGGACACTTGCTTAAAACCCTGCAATCTTC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000022784.9 |
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| 3UTR CCA 90 bp | TGCAGGGTTTTAAGCAAGTGTCCCCATATTCCCTTGTGGTGGTGGTaGTGGTCCACTGAGCAAGAAGAGAAGGTGGCCATGGAGAATTCA | + |
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Preference number: 1 (lower is better) Translates to: CRVLSKCPHIPLWWW*WSTEQEEKVAMENS Trigger: TGAATTCTCCATGGCCACCTTCTCTTCTTGCTCAGTGGACCACCACCACCACCACAAGGGAATATGGGGACACTTGCTTAAAACCCTGCA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000022784.9 |
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| 3UTR CCA 90 bp | GATTGCAGGGTTTTAAGCAAGTGTCCCCATATTCCCTTGTGGTGGTaGTGGTGGTCCACTGAGCAAGAAGAGAAGGTGGCCATGGAGAAT | + |
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Preference number: 1 (lower is better) Translates to: DCRVLSKCPHIPLWW*WWSTEQEEKVAMEN Trigger: ATTCTCCATGGCCACCTTCTCTTCTTGCTCAGTGGACCACCACCACCACCACAAGGGAATATGGGGACACTTGCTTAAAACCCTGCAATC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000022784.9 |
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| 3UTR CCA 90 bp | TGTGAAGATTGCAGGGTTTTAAGCAAGTGTCCCCATATTCCCTTGTaGTGGTGGTGGTGGTCCACTGAGCAAGAAGAGAAGGTGGCCATG | + |
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Preference number: 1 (lower is better) Translates to: CEDCRVLSKCPHIPL*WWWWSTEQEEKVAM Trigger: CATGGCCACCTTCTCTTCTTGCTCAGTGGACCACCACCACCACCACAAGGGAATATGGGGACACTTGCTTAAAACCCTGCAATCTTCACA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000022784.9 |
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| 3UTR TCA 90 bp | TCTTGTTGTCATTGTAAACAAGAAAGAGAACCCAGAAGGGTGTTGTaGAGATTGCAGGGTTTTAAGCAAGTGTCCCCATATTCCCTTGTG | + |
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Preference number: 1 (lower is better) Translates to: SCCHCKQEREPRRVL*RLQGFKQVSPYSLV Trigger: CACAAGGGAATATGGGGACACTTGCTTAAAACCCTGCAATCTTCACAACACCCTTCTGGGTTCTCTTTCTTGTTTACAATGACAACAAGA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000022784.9 |
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| 3UTR-3UTR GCA 90 bp | ACGGTCCCTAAGAGCCCCGGCAGAGAAAGTTCAATAGAAGGATGTAAGTCCTCAAGTCTGAAGAGCAGCTaGGTGCAGCTCCTGGGGGTT | + |
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Preference number: 2 (lower is better) Translates to: TVPKSPGRESSIEGCKSSSLKSS*VQLLGV Trigger: AACCCCCAGGAGCTGCACGCAGCTGCTCTTCAGACT...TGAGGACTTACATCCTTCTATTGAACTTTCTCTGCCGGGGCTCTTAGGGACCGT 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000226832.2 |
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| 3UTR CAA 90 bp | TGTTGTGAAGATTGCAGGGTTTTAAGCAAGTGTCCCCATATTCCCTaGTGGTGGTGGTGGTGGTCCACTGAGCAAGAAGAGAAGGTGGCC | + |
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Preference number: 2 (lower is better) Translates to: CCEDCRVLSKCPHIP*WWWWWSTEQEEKVA Trigger: GGCCACCTTCTCTTCTTGCTCAGTGGACCACCACCACCACCACAAGGGAATATGGGGACACTTGCTTAAAACCCTGCAATCTTCACAACA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000022784.9 |
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| 3UTR-3UTR CCA 90 bp | AACAAGAAAGAGAACCCAGAAGGGTGTTGTGAAGATTGCAGGGTTTTAAGCAAGCCCTTGTGGTGGTGGTaGTGGTCCACTGAGCAAGAA | + |
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Preference number: 2 (lower is better) Translates to: NKKENPEGCCEDCRVLSKPLWWW*WSTEQE Trigger: TTCTTGCTCAGTGGACCACCACCACCACCACAAGGG...CTTGCTTAAAACCCTGCAATCTTCACAACACCCTTCTGGGTTCTCTTTCTTGTT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000022784.9 |
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| 3UTR-3UTR CCA 90 bp | GTAAACAAGAAAGAGAACCCAGAAGGGTGTTGTGAAGATTGCAGGGTTTTAAGCCCCCATATTCCCTTGTaGTGGTGGTGGTGGTCCACT | + |
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Preference number: 2 (lower is better) Translates to: VNKKENPEGCCEDCRVLSPHIPL*WWWWST Trigger: AGTGGACCACCACCACCACCACAAGGGAATATGGGG...GCTTAAAACCCTGCAATCTTCACAACACCCTTCTGGGTTCTCTTTCTTGTTTAC 48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000022784.9 |
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| 3UTR-3UTR CCA 90 bp | ATTGTAAACAAGAAAGAGAACCCAGAAGGGTGTTGTGAAGATTGCAGGGTTTTACATATTCCCTTGTGGTaGTGGTGGTGGTCCACTGAG | + |
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Preference number: 2 (lower is better) Translates to: IVNKKENPEGCCEDCRVLHIPLW*WWWSTE Trigger: CTCAGTGGACCACCACCACCACCACAAGGGAATATG...TAAAACCCTGCAATCTTCACAACACCCTTCTGGGTTCTCTTTCTTGTTTACAAT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000022784.9 |
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| 3UTR-3UTR TCA 90 bp | TTACACACGCCTGATGCAAAACAGATATGTACGGAATTTTATAAATCTGATAGCCCCAGAAGGGTGTTGTaGAGATTGCAGGGTTTTAAG | + |
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Preference number: 2 (lower is better) Translates to: LHTPDAKQICTEFYKSDSPRRVL*RLQGFK Trigger: CTTAAAACCCTGCAATCTTCACAACACCCTTCTGGG...GCTATCAGATTTATAAAATTCCGTACATATCTGTTTTGCATCAGGCGTGTGTAA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt. Matches the following 1 transcripts: ENSMUST00000022784.9 |
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| 3UTR-3UTR CCA 90 bp | TTACACACGCCTGATGCAAAACAGATATGTACGGAATTTTATAAATCTGATAGCAGCAAGAAGAGAAGGTaGCCATGGAGAATTCACGCT | + |
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Preference number: 2 (lower is better) Translates to: LHTPDAKQICTEFYKSDSSKKRR*PWRIHA Trigger: AGCGTGAATTCTCCATGGCCACCTTCTCTTCTTGCT...GCTATCAGATTTATAAAATTCCGTACATATCTGTTTTGCATCAGGCGTGTGTAA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000022784.9 |
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| 3UTR CCA 72 bp | GGTGGTGGTCCACTGAGCAAGAAGAGAAGGTGGCCATaGAGAATTCACGCTTCCTGGTTCTGCCTCCACTCA | + |
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Preference number: 3 (lower is better) Translates to: GGGPLSKKRRWP*RIHASWFCLHS Trigger: TGAGTGGAGGCAGAACCAGGAAGCGTGAATTCTCCATGGCCACCTTCTCTTCTTGCTCAGTGGACCACCACC 56% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022784.9 |
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| 3UTR TCA 72 bp | TCCCCATATTCCCTTGTGGTGGTGGTGGTGGTCCACTaGGCAAGAAGAGAAGGTGGCCATGGAGAATTCACG | + |
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Preference number: 3 (lower is better) Translates to: SPYSLVVVVVVH*ARREGGHGEFT Trigger: CGTGAATTCTCCATGGCCACCTTCTCTTCTTGCTCAGTGGACCACCACCACCACCACAAGGGAATATGGGGA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000022784.9 |
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| 3UTR CCA 72 bp | TTAAGCAAGTGTCCCCATATTCCCTTGTGGTGGTGGTaGTGGTCCACTGAGCAAGAAGAGAAGGTGGCCATG | + |
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Preference number: 3 (lower is better) Translates to: LSKCPHIPLWWW*WSTEQEEKVAM Trigger: CATGGCCACCTTCTCTTCTTGCTCAGTGGACCACCACCACCACCACAAGGGAATATGGGGACACTTGCTTAA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000022784.9 |
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| 3UTR CCA 72 bp | GTTTTAAGCAAGTGTCCCCATATTCCCTTGTGGTGGTaGTGGTGGTCCACTGAGCAAGAAGAGAAGGTGGCC | + |
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Preference number: 3 (lower is better) Translates to: VLSKCPHIPLWW*WWSTEQEEKVA Trigger: GGCCACCTTCTCTTCTTGCTCAGTGGACCACCACCACCACCACAAGGGAATATGGGGACACTTGCTTAAAAC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000022784.9 |
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| 3UTR CCA 72 bp | TGCAGGGTTTTAAGCAAGTGTCCCCATATTCCCTTGTaGTGGTGGTGGTGGTCCACTGAGCAAGAAGAGAAG | + |
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Preference number: 3 (lower is better) Translates to: CRVLSKCPHIPL*WWWWSTEQEEK Trigger: CTTCTCTTCTTGCTCAGTGGACCACCACCACCACCACAAGGGAATATGGGGACACTTGCTTAAAACCCTGCA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000022784.9 |
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| 3UTR GCA 72 bp | AACAAGAAAGAGAACCCAGAAGGGTGTTGTGAAGATTaGAGGGTTTTAAGCAAGTGTCCCCATATTCCCTTG | + |
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Preference number: 3 (lower is better) Translates to: NKKENPEGCCED*RVLSKCPHIPL Trigger: CAAGGGAATATGGGGACACTTGCTTAAAACCCTGCAATCTTCACAACACCCTTCTGGGTTCTCTTTCTTGTT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000022784.9 |
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| 3UTR TCA 72 bp | CATTGTAAACAAGAAAGAGAACCCAGAAGGGTGTTGTaGAGATTGCAGGGTTTTAAGCAAGTGTCCCCATAT | + |
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Preference number: 3 (lower is better) Translates to: HCKQEREPRRVL*RLQGFKQVSPY Trigger: ATATGGGGACACTTGCTTAAAACCCTGCAATCTTCACAACACCCTTCTGGGTTCTCTTTCTTGTTTACAATG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000022784.9 |
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| CDS-3UTR GCA 90 bp | AAGTGTCCCCATATTCCCTTGTGGTGGTGGTGGTGGTCCACTGAGCAAGAAGAGGCCTCCAGGCACTGCTaGTTCTCCCTGACCAGGACC | + |
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Preference number: 4 (lower is better) Translates to: KCPHIPLWWWWWSTEQEEASRHC*FSLTRT Trigger: GGTCCTGGTCAGGGAGAAGCAGCAGTGCCTGGAGGC...CTCTTCTTGCTCAGTGGACCACCACCACCACCACAAGGGAATATGGGGACACTT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000022784.9 |
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| CDS-3UTR GCA 90 bp | GCAAGTGTCCCCATATTCCCTTGTGGTGGTGGTGGTGGTCCACTGAGCAAGAAGTTGGCCTCCAGGCACTaGTGCTTCTCCCTGACCAGG | + |
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Preference number: 4 (lower is better) Translates to: ASVPIFPCGGGGGPLSKKLASRH*CFSLTR Trigger: CCTGGTCAGGGAGAAGCAGCAGTGCCTGGAGGCCAA...CTTCTTGCTCAGTGGACCACCACCACCACCACAAGGGAATATGGGGACACTTGC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000022784.9 |
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| CDS-3UTR CCA 90 bp | AGAAGAGAAGGTGGCCATGGAGAATTCACGCTTCCTGGTTCTGCCTCCACTCAGGGTCTAGCTCGGACTTaGTCTGCAGCCGGTGCTCCT | + |
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Preference number: 4 (lower is better) Translates to: RREGGHGEFTLPGSASTQGLART*SAAGAP Trigger: AGGAGCACCGGCTGCAGACCAAGTCCGAGCTAGACC...CTGAGTGGAGGCAGAACCAGGAAGCGTGAATTCTCCATGGCCACCTTCTCTTCT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022784.9 |
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| CDS-3UTR GCA 90 bp | CTGAGCAAGAAGAGAAGGTGGCCATGGAGAATTCACGCTTCCTGGTTCTGCCTCCATTTCCTCTTGAGCTaGTCCTCCACCTCCAGCTGG | + |
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Preference number: 4 (lower is better) Translates to: LSKKRRWPWRIHASWFCLHFLLS*SSTSSW Trigger: CCAGCTGGAGGTGGAGGAGCAGCTCAAGAGGAAATG...GAGGCAGAACCAGGAAGCGTGAATTCTCCATGGCCACCTTCTCTTCTTGCTCAG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022784.9 |
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| CDS-3UTR GCA 90 bp | GGTGGTGGTCCACTGAGCAAGAAGAGAAGGTGGCCATGGAGAATTCACGCTTCCCGTCCACACCTTCGCTaGTTTCAGTGTGTCTCCATC | + |
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Preference number: 4 (lower is better) Translates to: GGGPLSKKRRWPWRIHASRPHLR*FQCVSI Trigger: GATGGAGACACACTGAAAGCAGCGAAGGTGTGGACG...GGAAGCGTGAATTCTCCATGGCCACCTTCTCTTCTTGCTCAGTGGACCACCACC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022784.9 |
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| CDS-3UTR CCA 90 bp | GCAAGTGTCCCCATATTCCCTTGTGGTGGTGGTGGTGGTCCACTGAGCAAGAAGCTTTCATCCACGTGCTaGGAGAGACTGAGCAACAGC | + |
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Preference number: 4 (lower is better) Translates to: ASVPIFPCGGGGGPLSKKLSSTC*ERLSNS Trigger: GCTGTTGCTCAGTCTCTCCCAGCACGTGGATGAAAG...CTTCTTGCTCAGTGGACCACCACCACCACCACAAGGGAATATGGGGACACTTGC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000022784.9 |
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| CDS-3UTR TCA 90 bp | CTGAGCAAGAAGAGAAGGTGGCCATGGAGAATTCACGCTTCCTGGTTCTGCCTCGTCTCCATCAGTATCTaGACTGGGGTCATGGTAGCA | + |
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Preference number: 4 (lower is better) Translates to: LSKKRRWPWRIHASWFCLVSISI*TGVMVA Trigger: TGCTACCATGACCCCAGTTCAGATACTGATGGAGAC...GAGGCAGAACCAGGAAGCGTGAATTCTCCATGGCCACCTTCTCTTCTTGCTCAG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000022784.9 |
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| CDS-3UTR CCA 90 bp | CCTTGTGGTGGTGGTGGTGGTCCACTGAGCAAGAAGAGAAGGTGGCCATGGAGACAGCTTGCTGAAACGTaGATTCTGTATGAGATCCTC | + |
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Preference number: 4 (lower is better) Translates to: PCGGGGGPLSKKRRWPWRQLAET*ILYEIL Trigger: GAGGATCTCATACAGAATCCACGTTTCAGCAAGCTG...TCTCCATGGCCACCTTCTCTTCTTGCTCAGTGGACCACCACCACCACCACAAGG 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022784.9 |
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| CDS-3UTR GCA 90 bp | CTGAGCAAGAAGAGAAGGTGGCCATGGAGAATTCACGCTTCCTGGTTCTGCCTCTGCTTACCGCACACTTaGAGCAGCATTTCTACACCT | + |
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Preference number: 4 (lower is better) Translates to: LSKKRRWPWRIHASWFCLCLPHT*SSISTP Trigger: AGGTGTAGAAATGCTGCTGCAAGTGTGCGGTAAGCA...GAGGCAGAACCAGGAAGCGTGAATTCTCCATGGCCACCTTCTCTTCTTGCTCAG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022784.9 |
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| CDS-3UTR GCA 90 bp | GTAAACAAGAAAGAGAACCCAGAAGGGTGTTGTGAAGATTGCAGGGTTTTAAGCGGCAACTCTGTCTCCTaGCCGGGACCTGAGAGCTGC | + |
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Preference number: 4 (lower is better) Translates to: VNKKENPEGCCEDCRVLSGNSVS*PGPESC Trigger: GCAGCTCTCAGGTCCCGGGCAGGAGACAGAGTTGCC...GCTTAAAACCCTGCAATCTTCACAACACCCTTCTGGGTTCTCTTTCTTGTTTAC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000022784.9 |
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| 3UTR CAA 72 bp | GATTGCAGGGTTTTAAGCAAGTGTCCCCATATTCCCTaGTGGTGGTGGTGGTGGTCCACTGAGCAAGAAGAG | + |
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Preference number: 4 (lower is better) Translates to: DCRVLSKCPHIP*WWWWWSTEQEE Trigger: CTCTTCTTGCTCAGTGGACCACCACCACCACCACAAGGGAATATGGGGACACTTGCTTAAAACCCTGCAATC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000022784.9 |
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| CDS-3UTR CCA 90 bp | GTAAACAAGAAAGAGAACCCAGAAGGGTGTTGTGAAGATTGCAGGGTTTTAAGCAGCTGCTCCTTCTGCTaGCTCTTGGCCTCCAGGCAC | + |
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Preference number: 4 (lower is better) Translates to: VNKKENPEGCCEDCRVLSSCSFC*LLASRH Trigger: GTGCCTGGAGGCCAAGAGCCAGCAGAAGGAGCAGCT...GCTTAAAACCCTGCAATCTTCACAACACCCTTCTGGGTTCTCTTTCTTGTTTAC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000022784.9 |
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| CDS-3UTR TCA 90 bp | TTACACACGCCTGATGCAAAACAGATATGTACGGAATTTTATAAATCTGATAGCCCTGGGAGGGCGGCATaGGCTCCAGAAGGTCGGTCC | + |
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Preference number: 4 (lower is better) Translates to: LHTPDAKQICTEFYKSDSPGRAA*APEGRS Trigger: GGACCGACCTTCTGGAGCTCATGCCGCCCTCCCAGG...GCTATCAGATTTATAAAATTCCGTACATATCTGTTTTGCATCAGGCGTGTGTAA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000022784.9 |
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| CDS-3UTR GCA 90 bp | GTAAACAAGAAAGAGAACCCAGAAGGGTGTTGTGAAGATTGCAGGGTTTTAAGCTACACCTTCTCCAGGTaGACAGAAATCTCCAGACGC | + |
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Preference number: 4 (lower is better) Translates to: VNKKENPEGCCEDCRVLSYTFSR*TEISRR Trigger: GCGTCTGGAGATTTCTGTGCACCTGGAGAAGGTGTA...GCTTAAAACCCTGCAATCTTCACAACACCCTTCTGGGTTCTCTTTCTTGTTTAC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000022784.9 |
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| CDS-3UTR CCA 90 bp | ATTGTAAACAAGAAAGAGAACCCAGAAGGGTGTTGTGAAGATTGCAGGGTTTTATTCAGCTCCAGGTACTaGGCATTGATGCGGTCTAGC | + |
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Preference number: 4 (lower is better) Translates to: IVNKKENPEGCCEDCRVLFSSRY*ALMRSS Trigger: GCTAGACCGCATCAATGCCCAGTACCTGGAGCTGAA...TAAAACCCTGCAATCTTCACAACACCCTTCTGGGTTCTCTTTCTTGTTTACAAT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000022784.9 |
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| CDS-3UTR TCA 90 bp | GTAAACAAGAAAGAGAACCCAGAAGGGTGTTGTGAAGATTGCAGGGTTTTAAGCTGTTCAAGGGTCTCATaGAACTTTTTGTCTTCGGAG | + |
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Preference number: 4 (lower is better) Translates to: VNKKENPEGCCEDCRVLSCSRVS*NFLSSE Trigger: CTCCGAAGACAAAAAGTTTCATGAGACCCTTGAACA...GCTTAAAACCCTGCAATCTTCACAACACCCTTCTGGGTTCTCTTTCTTGTTTAC 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000022784.9 |
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| CDS-3UTR CAA 90 bp | GGTGGTGGTCCACTGAGCAAGAAGAGAAGGTGGCCATGGAGAATTCACGCTTCCCGGTCTAGCTCGGACTaGGTCTGCAGCCGGTGCTCC | + |
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Preference number: 5 (lower is better) Translates to: GGGPLSKKRRWPWRIHASRSSSD*VCSRCS Trigger: GGAGCACCGGCTGCAGACCAAGTCCGAGCTAGACCG...GGAAGCGTGAATTCTCCATGGCCACCTTCTCTTCTTGCTCAGTGGACCACCACC 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022784.9 |
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| CDS TCA 90 bp | TACCTCAGCCATGCTGTCTTACGATGCCGAACTTCACTCCACGCCTaGGCCTGCTCCTTGGCCAGCGTGAGGCTCAAGCCACTTTCATCC | + |
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Preference number: 5 (lower is better) Translates to: YLSHAVLRCRTSLHA*ACSLASVRLKPLSS Trigger: GGATGAAAGTGGCTTGAGCCTCACGCTGGCCAAGGAGCAGGCTCAGGCGTGGAGTGAAGTTCGGCATCGTAAGACAGCATGGCTGAGGTA 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000022784.9 ENSMUST00000226358.2 |
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| CDS GCA 90 bp | GCCTGCTCCTTGGCCAGCGTGAGGCTCAAGCCACTTTCATCCACGTaGTGGGAGAGACTGAGCAACAGCTTGCTGAAACGTGGATTCTGT | + |
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Preference number: 5 (lower is better) Translates to: ACSLASVRLKPLSST*WERLSNSLLKRGFC Trigger: ACAGAATCCACGTTTCAGCAAGCTGTTGCTCAGTCTCTCCCAGCACGTGGATGAAAGTGGCTTGAGCCTCACGCTGGCCAAGGAGCAGGC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000022784.9 ENSMUST00000226358.2 |
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| CDS-3UTR CAA 90 bp | CCTTGTGGTGGTGGTGGTGGTCCACTGAGCAAGAAGAGAAGGTGGCCATGGAGAGTGAAGCATTTCCTCTaGAGCTGCTCCTCCACCTCC | + |
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Preference number: 5 (lower is better) Translates to: PCGGGGGPLSKKRRWPWRVKHFL*SCSSTS Trigger: GGAGGTGGAGGAGCAGCTCAAGAGGAAATGCTTCAC...TCTCCATGGCCACCTTCTCTTCTTGCTCAGTGGACCACCACCACCACCACAAGG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022784.9 |
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| CDS CCA 90 bp | TGCTCCTTGGCCAGCGTGAGGCTCAAGCCACTTTCATCCACGTGCTaGGAGAGACTGAGCAACAGCTTGCTGAAACGTGGATTCTGTATG | + |
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Preference number: 5 (lower is better) Translates to: CSLASVRLKPLSSTC*ERLSNSLLKRGFCM Trigger: CATACAGAATCCACGTTTCAGCAAGCTGTTGCTCAGTCTCTCCCAGCACGTGGATGAAAGTGGCTTGAGCCTCACGCTGGCCAAGGAGCA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000022784.9 ENSMUST00000226358.2 |
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| CDS CCA 90 bp | ATCCTCAACCTAAGAATCATAGCACTGCACTTCAGCTCCAGGTACTaGGCATTGATGCGGTCTAGCTCGGACTTGGTCTGCAGCCGGTGC | + |
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Preference number: 5 (lower is better) Translates to: ILNLRIIALHFSSRY*ALMRSSSDLVCSRC Trigger: GCACCGGCTGCAGACCAAGTCCGAGCTAGACCGCATCAATGCCCAGTACCTGGAGCTGAAGTGCAGTGCTATGATTCTTAGGTTGAGGAT 54% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022784.9 |
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| CDS GCA 90 bp | TCCTCTTCCGTCAGGGCACACGGAGGAAACTGCTTACCGCACACTTaGAGCAGCATTTCTACACCTTCTCCAGGTGCACAGAAATCTCCA | + |
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Preference number: 5 (lower is better) Translates to: SSSVRAHGGNCLPHT*SSISTPSPGAQKSP Trigger: TGGAGATTTCTGTGCACCTGGAGAAGGTGTAGAAATGCTGCTGCAAGTGTGCGGTAAGCAGTTTCCTCCGTGTGCCCTGACGGAAGAGGA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000022784.9 ENSMUST00000226358.2 |
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| CDS CCA 90 bp | TTCATCCACGTGCTGGGAGAGACTGAGCAACAGCTTGCTGAAACGTaGATTCTGTATGAGATCCTCTTCCGTCAGGGCACACGGAGGAAA | + |
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Preference number: 5 (lower is better) Translates to: FIHVLGETEQQLAET*ILYEILFRQGTRRK Trigger: TTTCCTCCGTGTGCCCTGACGGAAGAGGATCTCATACAGAATCCACGTTTCAGCAAGCTGTTGCTCAGTCTCTCCCAGCACGTGGATGAA 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000022784.9 ENSMUST00000226358.2 |
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| CDS GCA 72 bp | CTCTCCAGACCTAGCAGCGGGGGCAACTCTGTCTCCTaGCCGGGACCTGAGAGCTGCGTCAGCTCAGTTACG | + |
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Preference number: 6 (lower is better) Translates to: LSRPSSGGNSVS*PGPESCVSSVT Trigger: CGTAACTGAGCTGACGCAGCTCTCAGGTCCCGGGCAGGAGACAGAGTTGCCCCCGCTGCTAGGTCTGGAGAG 64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000022784.9 ENSMUST00000226358.2 |
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| CDS CCA 72 bp | TCCAGCTGGAGCCGGGCTTTCATCCACACGAAATCCTaGGAGGGCGGCATGAGCTCCAGAAGGTCGGTCCTC | + |
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Preference number: 6 (lower is better) Translates to: SSWSRAFIHTKS*EGGMSSRRSVL Trigger: GAGGACCGACCTTCTGGAGCTCATGCCGCCCTCCCAGGATTTCGTGTGGATGAAAGCCCGGCTCCAGCTGGA 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000022784.9 ENSMUST00000226358.2 |
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| CDS TCA 72 bp | CTTCACTCCACGCCTGAGCCTGCTCCTTGGCCAGCGTaGGGCTCAAGCCACTTTCATCCACGTGCTGGGAGA | + |
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Preference number: 6 (lower is better) Translates to: LHSTPEPAPWPA*GSSHFHPRAGR Trigger: TCTCCCAGCACGTGGATGAAAGTGGCTTGAGCCTCACGCTGGCCAAGGAGCAGGCTCAGGCGTGGAGTGAAG 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000022784.9 ENSMUST00000226358.2 |
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| CDS TCA 72 bp | CCTGGAGGGCCCAGCGCTTGTTGTCGGCTGCCAGTCTaGGCTGGGTGTACTCCCTTACCAAGCTCTCAAAGT | + |
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Preference number: 6 (lower is better) Translates to: PGGPSACCRLPV*AGCTPLPSSQS Trigger: ACTTTGAGAGCTTGGTAAGGGAGTACACCCAGCTCAGACTGGCAGCCGACAACAAGCGCTGGGCCCTCCAGG 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022784.9 |
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| CDS CCA 72 bp | GCCAGCGTGAGGCTCAAGCCACTTTCATCCACGTGCTaGGAGAGACTGAGCAACAGCTTGCTGAAACGTGGA | + |
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Preference number: 6 (lower is better) Translates to: ASVRLKPLSSTC*ERLSNSLLKRG Trigger: TCCACGTTTCAGCAAGCTGTTGCTCAGTCTCTCCCAGCACGTGGATGAAAGTGGCTTGAGCCTCACGCTGGC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000022784.9 ENSMUST00000226358.2 |
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| CDS GCA 72 bp | GTCAGGGCACACGGAGGAAACTGCTTACCGCACACTTaGAGCAGCATTTCTACACCTTCTCCAGGTGCACAG | + |
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Preference number: 6 (lower is better) Translates to: VRAHGGNCLPHT*SSISTPSPGAQ Trigger: CTGTGCACCTGGAGAAGGTGTAGAAATGCTGCTGCAAGTGTGCGGTAAGCAGTTTCCTCCGTGTGCCCTGAC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000022784.9 ENSMUST00000226358.2 |
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| CDS GCA 72 bp | TTGGCCAGCGTGAGGCTCAAGCCACTTTCATCCACGTaGTGGGAGAGACTGAGCAACAGCTTGCTGAAACGT | + |
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Preference number: 6 (lower is better) Translates to: LASVRLKPLSST*WERLSNSLLKR Trigger: ACGTTTCAGCAAGCTGTTGCTCAGTCTCTCCCAGCACGTGGATGAAAGTGGCTTGAGCCTCACGCTGGCCAA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000022784.9 ENSMUST00000226358.2 |
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| CDS CAA 72 bp | CGTCAGGGCACACGGAGGAAACTGCTTACCGCACACTaGCAGCAGCATTTCTACACCTTCTCCAGGTGCACA | + |
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Preference number: 6 (lower is better) Translates to: RQGTRRKLLTAH*QQHFYTFSRCT Trigger: TGTGCACCTGGAGAAGGTGTAGAAATGCTGCTGCAAGTGTGCGGTAAGCAGTTTCCTCCGTGTGCCCTGACG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000022784.9 ENSMUST00000226358.2 |
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| CDS TCA 72 bp | CACCTTCGCTGCTTTCAGTGTGTCTCCATCAGTATCTaGACTGGGGTCATGGTAGCACAGCAGCGTGAAGCA | + |
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Preference number: 6 (lower is better) Translates to: HLRCFQCVSISI*TGVMVAQQREA Trigger: TGCTTCACGCTGCTGTGCTACCATGACCCCAGTTCAGATACTGATGGAGACACACTGAAAGCAGCGAAGGTG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000022784.9 ENSMUST00000226358.2 |
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| CDS CCA 72 bp | GTGCTGGGAGAGACTGAGCAACAGCTTGCTGAAACGTaGATTCTGTATGAGATCCTCTTCCGTCAGGGCACA | + |
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Preference number: 6 (lower is better) Translates to: VLGETEQQLAET*ILYEILFRQGT Trigger: TGTGCCCTGACGGAAGAGGATCTCATACAGAATCCACGTTTCAGCAAGCTGTTGCTCAGTCTCTCCCAGCAC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000022784.9 ENSMUST00000226358.2 |
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| CDS CCA 72 bp | CTAAGAATCATAGCACTGCACTTCAGCTCCAGGTACTaGGCATTGATGCGGTCTAGCTCGGACTTGGTCTGC | + |
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Preference number: 6 (lower is better) Translates to: LRIIALHFSSRY*ALMRSSSDLVC Trigger: GCAGACCAAGTCCGAGCTAGACCGCATCAATGCCCAGTACCTGGAGCTGAAGTGCAGTGCTATGATTCTTAG 53% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022784.9 |
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| CDS CAA 90 bp | CTCAAGCCACTTTCATCCACGTGCTGGGAGAGACTGAGCAACAGCTaGCTGAAACGTGGATTCTGTATGAGATCCTCTTCCGTCAGGGCA | + |
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Preference number: 6 (lower is better) Translates to: LKPLSSTCWERLSNS*LKRGFCMRSSSVRA Trigger: TGCCCTGACGGAAGAGGATCTCATACAGAATCCACGTTTCAGCAAGCTGTTGCTCAGTCTCTCCCAGCACGTGGATGAAAGTGGCTTGAG 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000022784.9 ENSMUST00000226358.2 |
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| CDS CAA 72 bp | CTTTCATCCACGTGCTGGGAGAGACTGAGCAACAGCTaGCTGAAACGTGGATTCTGTATGAGATCCTCTTCC | + |
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Preference number: 6 (lower is better) Translates to: LSSTCWERLSNS*LKRGFCMRSSS Trigger: GGAAGAGGATCTCATACAGAATCCACGTTTCAGCAAGCTGTTGCTCAGTCTCTCCCAGCACGTGGATGAAAG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000022784.9 ENSMUST00000226358.2 |
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