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Pregenerated sensors for HAUS3 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000079555

Ensembl transcript IDs: ENSMUST00000060049.8, ENSMUST00000202042.2

Found 14 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
CDS CCA 90 bp ACTTCATCCAATGCTGTTCCTTCTAGGATAGGCTTGCCTGATCGCTaGAGATCGCTGAAGGCTTCCAATTCTTTTTCAGACAATACATTC +
Preference number: 5 (lower is better)
Translates to: TSSNAVPSRIGLPDR*RSLKASNSFSDNTF
Trigger: GAATGTATTGTCTGAAAAAGAATTGGAAGCCTTCAGCGATCTCCAGCGATCAGGCAAGCCTATCCTAGAAGGAACAGCATTGGATGAAGT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000060049.8
ENSMUST00000202042.2
CDS GCA 90 bp GTTTTCAAGTATATGATCTGTTTCTGGACACAAATACATGCCATCTaGAGTCTAGCCATCTCCAGTCGTCGCTCCCTAAGGATTTCTTCA +
Preference number: 5 (lower is better)
Translates to: VFKYMICFWTQIHAI*SLAISSRRSLRISS
Trigger: TGAAGAAATCCTTAGGGAGCGACGACTGGAGATGGCTAGACTGCAGATGGCATGTATTTGTGTCCAGAAACAGATCATATACTTGAAAAC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000060049.8
CDS CCA 90 bp CTAGAAGTTCATAAAGCCTATGAGTGGAATGATCTTTGGTGTCGATaGGAGTCCTTGAGGTTAACTGCTCAGATGCTGGTATGTCTGATA +
Preference number: 5 (lower is better)
Translates to: LEVHKAYEWNDLWCR*ESLRLTAQMLVCLI
Trigger: TATCAGACATACCAGCATCTGAGCAGTTAACCTCAAGGACTCCCATCGACACCAAAGATCATTCCACTCATAGGCTTTATGAACTTCTAG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000060049.8
CDS GCA 90 bp ATTACTTGTTTTCAAGTATATGATCTGTTTCTGGACACAAATACATaGCATCTGCAGTCTAGCCATCTCCAGTCGTCGCTCCCTAAGGAT +
Preference number: 5 (lower is better)
Translates to: ITCFQVYDLFLDTNT*HLQSSHLQSSLPKD
Trigger: ATCCTTAGGGAGCGACGACTGGAGATGGCTAGACTGCAGATGGCATGTATTTGTGTCCAGAAACAGATCATATACTTGAAAACAAGTAAT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000060049.8
CDS CAA 72 bp AGAACTTCATCCAATGCTGTTCCTTCTAGGATAGGCTaGCCTGATCGCTGGAGATCGCTGAAGGCTTCCAAT +
Preference number: 6 (lower is better)
Translates to: RTSSNAVPSRIG*PDRWRSLKASN
Trigger: ATTGGAAGCCTTCAGCGATCTCCAGCGATCAGGCAAGCCTATCCTAGAAGGAACAGCATTGGATGAAGTTCT
49% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000060049.8
ENSMUST00000202042.2
CDS CAA 90 bp CAGGTCCTAAGAACTTCATCCAATGCTGTTCCTTCTAGGATAGGCTaGCCTGATCGCTGGAGATCGCTGAAGGCTTCCAATTCTTTTTCA +
Preference number: 6 (lower is better)
Translates to: QVLRTSSNAVPSRIG*PDRWRSLKASNSFS
Trigger: TGAAAAAGAATTGGAAGCCTTCAGCGATCTCCAGCGATCAGGCAAGCCTATCCTAGAAGGAACAGCATTGGATGAAGTTCTTAGGACCTG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000060049.8
ENSMUST00000202042.2
CDS GCA 72 bp TATATGATCTGTTTCTGGACACAAATACATGCCATCTaGAGTCTAGCCATCTCCAGTCGTCGCTCCCTAAGG +
Preference number: 6 (lower is better)
Translates to: YMICFWTQIHAI*SLAISSRRSLR
Trigger: CCTTAGGGAGCGACGACTGGAGATGGCTAGACTGCAGATGGCATGTATTTGTGTCCAGAAACAGATCATATA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000060049.8
CDS CCA 72 bp AATGCTGTTCCTTCTAGGATAGGCTTGCCTGATCGCTaGAGATCGCTGAAGGCTTCCAATTCTTTTTCAGAC +
Preference number: 6 (lower is better)
Translates to: NAVPSRIGLPDR*RSLKASNSFSD
Trigger: GTCTGAAAAAGAATTGGAAGCCTTCAGCGATCTCCAGCGATCAGGCAAGCCTATCCTAGAAGGAACAGCATT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000060049.8
ENSMUST00000202042.2
CDS CCA 72 bp CATAAAGCCTATGAGTGGAATGATCTTTGGTGTCGATaGGAGTCCTTGAGGTTAACTGCTCAGATGCTGGTA +
Preference number: 6 (lower is better)
Translates to: HKAYEWNDLWCR*ESLRLTAQMLV
Trigger: TACCAGCATCTGAGCAGTTAACCTCAAGGACTCCCATCGACACCAAAGATCATTCCACTCATAGGCTTTATG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000060049.8
CDS GCA 72 bp TTTCAAGTATATGATCTGTTTCTGGACACAAATACATaGCATCTGCAGTCTAGCCATCTCCAGTCGTCGCTC +
Preference number: 6 (lower is better)
Translates to: FQVYDLFLDTNT*HLQSSHLQSSL
Trigger: GAGCGACGACTGGAGATGGCTAGACTGCAGATGGCATGTATTTGTGTCCAGAAACAGATCATATACTTGAAA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000060049.8
CDS CCA 72 bp CTAGAAGTTCATAAAGCCTATGAGTGGAATGATCTTTaGTGTCGATGGGAGTCCTTGAGGTTAACTGCTCAG +
Preference number: 6 (lower is better)
Translates to: LEVHKAYEWNDL*CRWESLRLTAQ
Trigger: CTGAGCAGTTAACCTCAAGGACTCCCATCGACACCAAAGATCATTCCACTCATAGGCTTTATGAACTTCTAG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000060049.8
CDS CAA 72 bp TATGAGTGGAATGATCTTTGGTGTCGATGGGAGTCCTaGAGGTTAACTGCTCAGATGCTGGTATGTCTGATA +
Preference number: 6 (lower is better)
Translates to: YEWNDLWCRWES*RLTAQMLVCLI
Trigger: TATCAGACATACCAGCATCTGAGCAGTTAACCTCAAGGACTCCCATCGACACCAAAGATCATTCCACTCATA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000060049.8
CDS CAA 90 bp CTCTTGAGTAGATACTGCCAACTGATCTTGTATTACAGAAACATCTaGTTTCAATTTCTCAGCCACTTCCTCCAGGTGTTCATGGGTTAT +
Preference number: 6 (lower is better)
Translates to: LLSRYCQLILYYRNI*FQFLSHFLQVFMGY
Trigger: ATAACCCATGAACACCTGGAGGAAGTGGCTGAGAAATTGAAACAAGATGTTTCTGTAATACAAGATCAGTTGGCAGTATCTACTCAAGAG
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000060049.8
CDS GCA 72 bp TTACTGAGCTTAGTATTCACAGAATTTAGGAATCCTTaGTTCTGTTTCAGCTTCTTAGTGGCCTCCTCTTGT +
Preference number: 6 (lower is better)
Translates to: LLSLVFTEFRNP*FCFSFLVASSC
Trigger: ACAAGAGGAGGCCACTAAGAAGCTGAAACAGAAGCAAGGATTCCTAAATTCTGTGAATACTAAGCTCAGTAA
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000060049.8