Pregenerated sensors for HAUS2 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000027285Ensembl transcript IDs: ENSMUST00000028741.14, ENSMUST00000110706.2, ENSMUST00000124187.8
Found 88 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | AGGGCATCAGACCCCCTTATAGATGGTGGTGAGCAACCTTGTGGTTaGTGGGAATTGAACTCAGGACCTGTGGTAGAGTGGCCAGTGCTC | + |
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Preference number: 1 (lower is better) Translates to: RASDPLIDGGEQPCG*WELNSGPVVEWPVL Trigger: GAGCACTGGCCACTCTACCACAGGTCCTGAGTTCAATTCCCAGCAACCACAAGGTTGCTCACCACCATCTATAAGGGGGTCTGATGCCCT 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000028741.14 ENSMUST00000110706.2 ENSMUST00000124187.8 |
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| 3UTR GCA 90 bp | AACTCACTTTGTAGACCAGGCTGGCCTCGAACTCAGAAATCTGCCTaGCTTTGCCACCCAAGTGCTGGGATTAAAGGCGTGCGTCACCAC | + |
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Preference number: 1 (lower is better) Translates to: NSLCRPGWPRTQKSA*LCHPSAGIKGVRHH Trigger: GTGGTGACGCACGCCTTTAATCCCAGCACTTGGGTGGCAAAGGCAGGCAGATTTCTGAGTTCGAGGCCAGCCTGGTCTACAAAGTGAGTT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000110706.2 ENSMUST00000124187.8 |
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| 3UTR TCA 90 bp | ATCTGCAGGCCAGAAGAGGGCATCAGACCCCCTTATAGATGGTGGTaGGCAACCTTGTGGTTGCTGGGAATTGAACTCAGGACCTGTGGT | + |
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Preference number: 1 (lower is better) Translates to: ICRPEEGIRPPYRWW*ATLWLLGIELRTCG Trigger: ACCACAGGTCCTGAGTTCAATTCCCAGCAACCACAAGGTTGCTCACCACCATCTATAAGGGGGTCTGATGCCCTCTTCTGGCCTGCAGAT 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000028741.14 ENSMUST00000110706.2 ENSMUST00000124187.8 |
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| 3UTR CCA 90 bp | GCATCAGACCCCCTTATAGATGGTGGTGAGCAACCTTGTGGTTGCTaGGAATTGAACTCAGGACCTGTGGTAGAGTGGCCAGTGCTCTTA | + |
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Preference number: 1 (lower is better) Translates to: ASDPLIDGGEQPCGC*ELNSGPVVEWPVLL Trigger: TAAGAGCACTGGCCACTCTACCACAGGTCCTGAGTTCAATTCCCAGCAACCACAAGGTTGCTCACCACCATCTATAAGGGGGTCTGATGC 52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000028741.14 ENSMUST00000110706.2 ENSMUST00000124187.8 |
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| 3UTR GCA 90 bp | TTAAAGGCTCGCGCCACCACACCCGGCTTTGTTACATTTGTTGAATaGTATCTACCATCAAAACTGTTAGGGACGAGGTGCTCTGCAATG | + |
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Preference number: 1 (lower is better) Translates to: LKARATTPGFVTFVE*YLPSKLLGTRCSAM Trigger: CATTGCAGAGCACCTCGTCCCTAACAGTTTTGATGGTAGATAGCATTCAACAAATGTAACAAAGCCGGGTGTGGTGGCGCGAGCCTTTAA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000110706.2 ENSMUST00000124187.8 |
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| 3UTR GCA 90 bp | GTGAAGCCATATGTACTCCAATGTGCTCGCTCTCTCATGTGCGCGTaGACATACATACATACATACATACACACACACACACACACACAC | + |
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Preference number: 1 (lower is better) Translates to: VKPYVLQCARSLMCA*TYIHTYIHTHTHTH Trigger: GTGTGTGTGTGTGTGTGTGTGTATGTATGTATGTATGTATGTGCACGCGCACATGAGAGAGCGAGCACATTGGAGTACATATGGCTTCAC 47% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000028741.14 ENSMUST00000110706.2 ENSMUST00000124187.8 |
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| 3UTR CCA 90 bp | CAGATCCAACATATGTACCACATATCTGTGATAAACAGCTTCCAATaGCAAGTTCTCCTGGCACATGGGTCTCAGCAGTCTTTGCCTGAT | + |
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Preference number: 1 (lower is better) Translates to: QIQHMYHISVINSFQ*QVLLAHGSQQSLPD Trigger: ATCAGGCAAAGACTGCTGAGACCCATGTGCCAGGAGAACTTGCCATTGGAAGCTGTTTATCACAGATATGTGGTACATATGTTGGATCTG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028741.14 |
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| 3UTR GCA 90 bp | ACATTTGTTGAATGCTATCTACCATCAAAACTGTTAGGGACGAGGTaGTCTGCAATGCCAGGGACCAGTACCAAAGGTACTTTCTACTTG | + |
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Preference number: 1 (lower is better) Translates to: TFVECYLPSKLLGTR*SAMPGTSTKGTFYL Trigger: CAAGTAGAAAGTACCTTTGGTACTGGTCCCTGGCATTGCAGAGCACCTCGTCCCTAACAGTTTTGATGGTAGATAGCATTCAACAAATGT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000110706.2 ENSMUST00000124187.8 |
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| 3UTR CCA 90 bp | GCCAAGGAACCACCACTTTACGAAGTCTTCAAAGGGTTACAGTCCTaGTATGTAGCTAATCTACAATCTCACAGGAATAATCACGACAGT | + |
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Preference number: 1 (lower is better) Translates to: AKEPPLYEVFKGLQS*YVANLQSHRNNHDS Trigger: ACTGTCGTGATTATTCCTGTGAGATTGTAGATTAGCTACATACCAGGACTGTAACCCTTTGAAGACTTCGTAAAGTGGTGGTTCCTTGGC 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000110706.2 ENSMUST00000124187.8 |
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| 3UTR TCA 90 bp | TATATTAGTATTTTCCATTACAAACCTCTAAACTTTAGCCAGATATaGTACCACATGTCTGTGATTCCAGCACTAGGGCGGCAGAGGCAA | + |
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Preference number: 1 (lower is better) Translates to: YISIFHYKPLNFSQI*YHMSVIPALGRQRQ Trigger: TTGCCTCTGCCGCCCTAGTGCTGGAATCACAGACATGTGGTATCATATCTGGCTAAAGTTTAGAGGTTTGTAATGGAAAATACTAATATA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000110706.2 ENSMUST00000124187.8 |
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| 3UTR-3UTR TCA 90 bp | AAACTGTTAGGGACGAGGTGCTCTGCAATGCCAGGGACCAGTACCAAAGGTACTGTGGATCCCAGGGACTaGACTCAGGCTGGAAGGCTT | + |
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Preference number: 2 (lower is better) Translates to: KLLGTRCSAMPGTSTKGTVDPRD*TQAGRL Trigger: AAGCCTTCCAGCCTGAGTTCAGTCCCTGGGATCCAC...AGTACCTTTGGTACTGGTCCCTGGCATTGCAGAGCACCTCGTCCCTAACAGTTT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000110706.2 ENSMUST00000124187.8 |
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| 3UTR-3UTR CCA 90 bp | CCCCTTCTGCTAATGTGGATCCCAGGGACTGAACTCAGGCTGGAAGGCTTGAAGAGTTCTCCTGGCACATaGGTCTCAGCAGTCTTTGCC | + |
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Preference number: 2 (lower is better) Translates to: PLLLMWIPGTELRLEGLKSSPGT*VSAVFA Trigger: GGCAAAGACTGCTGAGACCCATGTGCCAGGAGAACT...CTTCAAGCCTTCCAGCCTGAGTTCAGTCCCTGGGATCCACATTAGCAGAAGGGG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028741.14 |
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| 3UTR CAA 90 bp | GACCCCCTTATAGATGGTGGTGAGCAACCTTGTGGTTGCTGGGAATaGAACTCAGGACCTGTGGTAGAGTGGCCAGTGCTCTTATCCCCT | + |
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Preference number: 2 (lower is better) Translates to: DPLIDGGEQPCGCWE*NSGPVVEWPVLLSP Trigger: AGGGGATAAGAGCACTGGCCACTCTACCACAGGTCCTGAGTTCAATTCCCAGCAACCACAAGGTTGCTCACCACCATCTATAAGGGGGTC 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000028741.14 ENSMUST00000110706.2 ENSMUST00000124187.8 |
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| 3UTR-3UTR TCA 90 bp | CCCCTTCTGCTAATGTGGATCCCAGGGACTGAACTCAGGCTGGAAGGCTTGAAGGGAGCTTTTTCCCACTaGGACATCTTTCTGGCTCCA | + |
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Preference number: 2 (lower is better) Translates to: PLLLMWIPGTELRLEGLKGAFSH*DIFLAP Trigger: TGGAGCCAGAAAGATGTCTCAGTGGGAAAAAGCTCC...CTTCAAGCCTTCCAGCCTGAGTTCAGTCCCTGGGATCCACATTAGCAGAAGGGG 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000028741.14 ENSMUST00000110706.2 ENSMUST00000124187.8 |
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| 3UTR-3UTR TCA 90 bp | AGAGGAGTTATGAGACTTGGTGTCATCACTCACAGCAGTGACTCAGTACAGCAAGTGGATCCCAGGGACTaGACTCAGGCTGGAAGGCTT | + |
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Preference number: 2 (lower is better) Translates to: RGVMRLGVITHSSDSVQQVDPRD*TQAGRL Trigger: AAGCCTTCCAGCCTGAGTTCAGTCCCTGGGATCCAC...TTGCTGTACTGAGTCACTGCTGTGAGTGATGACACCAAGTCTCATAACTCCTCT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000110706.2 ENSMUST00000124187.8 |
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| 3UTR-3UTR TCA 90 bp | AAACTGTTAGGGACGAGGTGCTCTGCAATGCCAGGGACCAGTACCAAAGGTACTACAGTCTGTTCAAACTaGGCCCTTCTCAGCCTCTTA | + |
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Preference number: 2 (lower is better) Translates to: KLLGTRCSAMPGTSTKGTTVCSN*ALLSLL Trigger: TAAGAGGCTGAGAAGGGCTCAGTTTGAACAGACTGT...AGTACCTTTGGTACTGGTCCCTGGCATTGCAGAGCACCTCGTCCCTAACAGTTT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000110706.2 ENSMUST00000124187.8 |
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| 3UTR-3UTR CCA 90 bp | CTCTCATGTGCGCGTGCACATACATACATACATACATACACACACACACACACAGACATCACTTGGCCCTaGAGGTTTCGGTGTGAGCCT | + |
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Preference number: 2 (lower is better) Translates to: LSCARAHTYIHTYTHTHTDITWP*RFRCEP Trigger: AGGCTCACACCGAAACCTCCAGGGCCAAGTGATGTC...TGTGTGTGTGTGTGTGTATGTATGTATGTATGTATGTGCACGCGCACATGAGAG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028741.14 |
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| 3UTR CAA 90 bp | AGGTGCTCTGCAATGCCAGGGACCAGTACCAAAGGTACTTTCTACTaGGTACGGACCAACATCCTAGGCTCTCAGAAGGAAAGAAAGTAT | + |
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Preference number: 2 (lower is better) Translates to: RCSAMPGTSTKGTFY*VRTNILGSQKERKY Trigger: ATACTTTCTTTCCTTCTGAGAGCCTAGGATGTTGGTCCGTACCAAGTAGAAAGTACCTTTGGTACTGGTCCCTGGCATTGCAGAGCACCT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000110706.2 ENSMUST00000124187.8 |
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| 3UTR-3UTR TCA 90 bp | TGGGAATTGAACTCAGGACCTGTGGTAGAGTGGCCAGTGCTCTTATCCCCTGAGACTATGTCAAGTTCATaGAGATGGCGTTCTTCAGTT | + |
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Preference number: 2 (lower is better) Translates to: WELNSGPVVEWPVLLSPETMSSS*RWRSSV Trigger: AACTGAAGAACGCCATCTTCATGAACTTGACATAGT...CTCAGGGGATAAGAGCACTGGCCACTCTACCACAGGTCCTGAGTTCAATTCCCA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028741.14 |
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| 3UTR-3UTR TCA 90 bp | GAGCATGATGAGCAGGTTTGCTACACTCCCACAGTGCAGAATAAAACAGTAAGGCATCACTCACAGCAGTaGCTCAGTACAGCAACTCAG | + |
|
Preference number: 2 (lower is better) Translates to: EHDEQVCYTPTVQNKTVRHHSQQ*LSTATQ Trigger: CTGAGTTGCTGTACTGAGTCACTGCTGTGAGTGATG...CCTTACTGTTTTATTCTGCACTGTGGGAGTGTAGCAAACCTGCTCATCATGCTC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000110706.2 ENSMUST00000124187.8 |
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| 3UTR-3UTR GCA 90 bp | TGTGCTCGCTCTCTCATGTGCGCGTGCACATACATACATACATACATACACACAGGTCTCAGCAGTCTTTaGCTGATGGCATGCTTCTCT | + |
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Preference number: 2 (lower is better) Translates to: CARSLMCACTYIHTYIHTGLSSL*LMACFS Trigger: AGAGAAGCATGCCATCAGGCAAAGACTGCTGAGACC...TGTGTGTATGTATGTATGTATGTATGTGCACGCGCACATGAGAGAGCGAGCACA 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028741.14 |
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| 3UTR CAA 90 bp | CGGGAGACTTTCAAGACAATAATCTATTGTTTTAGCAGGGCCCTTTaGGAGGTTGGGGGTAGGGTAAAGACCCTGCTTCCTTGTGAACAT | + |
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Preference number: 2 (lower is better) Translates to: RETFKTIIYCFSRAL*EVGGRVKTLLPCEH Trigger: ATGTTCACAAGGAAGCAGGGTCTTTACCCTACCCCCAACCTCCAAAAGGGCCCTGCTAAAACAATAGATTATTGTCTTGAAAGTCTCCCG 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000110706.2 ENSMUST00000124187.8 |
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| 3UTR-3UTR GCA 90 bp | CCCCTTCTGCTAATGTGGATCCCAGGGACTGAACTCAGGCTGGAAGGCTTGAAGAAAGCTTTGCTCATTTaGTTTAGGTTTGCGTCTAAA | + |
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Preference number: 2 (lower is better) Translates to: PLLLMWIPGTELRLEGLKKALLI*FRFASK Trigger: TTTAGACGCAAACCTAAAGCAAATGAGCAAAGCTTT...CTTCAAGCCTTCCAGCCTGAGTTCAGTCCCTGGGATCCACATTAGCAGAAGGGG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028741.14 |
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| 3UTR-3UTR CCA 90 bp | CTCTCATGTGCGCGTGCACATACATACATACATACATACACACACACACACACAAATGGCAAGTTCTCCTaGCACATGGGTCTCAGCAGT | + |
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Preference number: 2 (lower is better) Translates to: LSCARAHTYIHTYTHTHTNGKFS*HMGLSS Trigger: ACTGCTGAGACCCATGTGCCAGGAGAACTTGCCATT...TGTGTGTGTGTGTGTGTATGTATGTATGTATGTATGTGCACGCGCACATGAGAG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028741.14 |
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| 3UTR-3UTR TCA 90 bp | GAGCATGATGAGCAGGTTTGCTACACTCCCACAGTGCAGAATAAAACAGTAAGGGGAAAATCATGTGTTTaGGACCACCCTGGGAAACAT | + |
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Preference number: 2 (lower is better) Translates to: EHDEQVCYTPTVQNKTVRGKSCV*DHPGKH Trigger: ATGTTTCCCAGGGTGGTCTCAAACACATGATTTTCC...CCTTACTGTTTTATTCTGCACTGTGGGAGTGTAGCAAACCTGCTCATCATGCTC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000110706.2 ENSMUST00000124187.8 |
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| 3UTR-3UTR CCA 90 bp | AACATAGTGAGTTCAAGTTCTGCCTTGGCTACATATAGGAAGTACCAAAACAAAGGACCTGTGGTAGAGTaGCCAGTGCTCTTATCCCCT | + |
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Preference number: 2 (lower is better) Translates to: NIVSSSSALATYRKYQNKGPVVE*PVLLSP Trigger: AGGGGATAAGAGCACTGGCCACTCTACCACAGGTCC...TTTGTTTTGGTACTTCCTATATGTAGCCAAGGCAGAACTTGAACTCACTATGTT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000110706.2 ENSMUST00000124187.8 |
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| 3UTR-3UTR GCA 90 bp | TGTGCTCGCTCTCTCATGTGCGCGTGCACATACATACATACATACATACACACACTTGAGTATATTCTCTaGCAGTTCTTCTGTCTTGTT | + |
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Preference number: 2 (lower is better) Translates to: CARSLMCACTYIHTYIHTLEYIL*QFFCLV Trigger: AACAAGACAGAAGAACTGGCAGAGAATATACTCAAG...TGTGTGTATGTATGTATGTATGTATGTGCACGCGCACATGAGAGAGCGAGCACA 42% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028741.14 |
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| 3UTR-3UTR GCA 90 bp | AACATAGTGAGTTCAAGTTCTGCCTTGGCTACATATAGGAAGTACCAAAACAAAGCTCGCTCTCTCATGTaGGCGTGCACATACATACAT | + |
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Preference number: 2 (lower is better) Translates to: NIVSSSSALATYRKYQNKARSLM*ACTYIH Trigger: ATGTATGTATGTGCACGCGCACATGAGAGAGCGAGC...TTTGTTTTGGTACTTCCTATATGTAGCCAAGGCAGAACTTGAACTCACTATGTT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000110706.2 ENSMUST00000124187.8 |
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| 3UTR CAA 90 bp | GGCGAAGTACTTACAGGACTGATGAGTGAGAAAATCTTGAGACAATaGTTACAATCTCTACTTTTAAGTATACTTGCCTCCATCTTAAGA | + |
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Preference number: 2 (lower is better) Translates to: GEVLTGLMSEKILRQ*LQSLLLSILASILR Trigger: TCTTAAGATGGAGGCAAGTATACTTAAAAGTAGAGATTGTAACAATTGTCTCAAGATTTTCTCACTCATCAGTCCTGTAAGTACTTCGCC 37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000110706.2 ENSMUST00000124187.8 |
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| 3UTR GCA 72 bp | CCAGGCTGGCCTCGAACTCAGAAATCTGCCTGCCTTTaGCACCCAAGTGCTGGGATTAAAGGCGTGCGTCAC | + |
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Preference number: 3 (lower is better) Translates to: PGWPRTQKSACL*HPSAGIKGVRH Trigger: GTGACGCACGCCTTTAATCCCAGCACTTGGGTGGCAAAGGCAGGCAGATTTCTGAGTTCGAGGCCAGCCTGG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000110706.2 ENSMUST00000124187.8 |
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| 3UTR CCA 72 bp | GGTTGCTGGGAATTGAACTCAGGACCTGTGGTAGAGTaGCCAGTGCTCTTATCCCCTGAGCCAACCCACCAG | + |
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Preference number: 3 (lower is better) Translates to: GCWELNSGPVVE*PVLLSPEPTHQ Trigger: CTGGTGGGTTGGCTCAGGGGATAAGAGCACTGGCCACTCTACCACAGGTCCTGAGTTCAATTCCCAGCAACC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000028741.14 ENSMUST00000110706.2 ENSMUST00000124187.8 |
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| 3UTR GCA 72 bp | TGTAGACCAGGCTGGCCTCGAACTCAGAAATCTGCCTaGCTTTGCCACCCAAGTGCTGGGATTAAAGGCGTG | + |
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Preference number: 3 (lower is better) Translates to: CRPGWPRTQKSA*LCHPSAGIKGV Trigger: CACGCCTTTAATCCCAGCACTTGGGTGGCAAAGGCAGGCAGATTTCTGAGTTCGAGGCCAGCCTGGTCTACA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000110706.2 ENSMUST00000124187.8 |
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| 3UTR TCA 72 bp | CCAGAAGAGGGCATCAGACCCCCTTATAGATGGTGGTaGGCAACCTTGTGGTTGCTGGGAATTGAACTCAGG | + |
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Preference number: 3 (lower is better) Translates to: PEEGIRPPYRWW*ATLWLLGIELR Trigger: CCTGAGTTCAATTCCCAGCAACCACAAGGTTGCTCACCACCATCTATAAGGGGGTCTGATGCCCTCTTCTGG 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000028741.14 ENSMUST00000110706.2 ENSMUST00000124187.8 |
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| 3UTR GCA 72 bp | GGCAAGTTCTCCTGGCACATGGGTCTCAGCAGTCTTTaGCTGATGGCATGCTTCTCTTTTAGCACTGCTTCC | + |
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Preference number: 3 (lower is better) Translates to: GKFSWHMGLSSL*LMACFSFSTAS Trigger: GGAAGCAGTGCTAAAAGAGAAGCATGCCATCAGGCAAAGACTGCTGAGACCCATGTGCCAGGAGAACTTGCC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028741.14 |
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| 3UTR CCA 72 bp | GTATCTGTGGGAATCAGTGATCCCCTTCTGCTAATGTaGATCCCAGGGACTGAACTCAGGCTGGAAGGCTTG | + |
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Preference number: 3 (lower is better) Translates to: VSVGISDPLLLM*IPGTELRLEGL Trigger: CAAGCCTTCCAGCCTGAGTTCAGTCCCTGGGATCCACATTAGCAGAAGGGGATCACTGATTCCCACAGATAC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000028741.14 ENSMUST00000110706.2 ENSMUST00000124187.8 |
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| 3UTR TCA 72 bp | AGTTCTCCTGGCACATGGGTCTCAGCAGTCTTTGCCTaGTGGCATGCTTCTCTTTTAGCACTGCTTCCAGAT | + |
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Preference number: 3 (lower is better) Translates to: SSPGTWVSAVFA*WHASLLALLPD Trigger: ATCTGGAAGCAGTGCTAAAAGAGAAGCATGCCATCAGGCAAAGACTGCTGAGACCCATGTGCCAGGAGAACT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028741.14 |
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| 3UTR TCA 72 bp | TGTGGATCCCAGGGACTGAACTCAGGCTGGAAGGCTTaGAGTAGGAGCTTTTTCCCACTGAGACATCTTTCT | + |
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Preference number: 3 (lower is better) Translates to: CGSQGLNSGWKA*SRSFFPLRHLS Trigger: AGAAAGATGTCTCAGTGGGAAAAAGCTCCTACTTCAAGCCTTCCAGCCTGAGTTCAGTCCCTGGGATCCACA 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000028741.14 ENSMUST00000110706.2 ENSMUST00000124187.8 |
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| 3UTR GCA 72 bp | GAATGCTATCTACCATCAAAACTGTTAGGGACGAGGTaGTCTGCAATGCCAGGGACCAGTACCAAAGGTACT | + |
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Preference number: 3 (lower is better) Translates to: ECYLPSKLLGTR*SAMPGTSTKGT Trigger: AGTACCTTTGGTACTGGTCCCTGGCATTGCAGAGCACCTCGTCCCTAACAGTTTTGATGGTAGATAGCATTC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000110706.2 ENSMUST00000124187.8 |
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| 3UTR CCA 72 bp | CATATGTACCACATATCTGTGATAAACAGCTTCCAATaGCAAGTTCTCCTGGCACATGGGTCTCAGCAGTCT | + |
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Preference number: 3 (lower is better) Translates to: HMYHISVINSFQ*QVLLAHGSQQS Trigger: AGACTGCTGAGACCCATGTGCCAGGAGAACTTGCCATTGGAAGCTGTTTATCACAGATATGTGGTACATATG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028741.14 |
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| 3UTR TCA 72 bp | AGGAGTTATGAGACTTGGTGTCATCACTCACAGCAGTaGCTCAGTACAGCAACTCAGCTGTTACATGGTTTT | + |
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Preference number: 3 (lower is better) Translates to: RSYETWCHHSQQ*LSTATQLLHGF Trigger: AAAACCATGTAACAGCTGAGTTGCTGTACTGAGTCACTGCTGTGAGTGATGACACCAAGTCTCATAACTCCT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000110706.2 ENSMUST00000124187.8 |
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| 3UTR CCA 72 bp | TGCGTCACCACACCCAACTTTAACACCACTCTTATATaGCACATTTGTAAAAGCGGGAGACTTTCAAGACAA | + |
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Preference number: 3 (lower is better) Translates to: CVTTPNFNTTLI*HICKSGRLSRQ Trigger: TTGTCTTGAAAGTCTCCCGCTTTTACAAATGTGCCATATAAGAGTGGTGTTAAAGTTGGGTGTGGTGACGCA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000110706.2 ENSMUST00000124187.8 |
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| 3UTR TCA 72 bp | ATTTTCCATTACAAACCTCTAAACTTTAGCCAGATATaGTACCACATGTCTGTGATTCCAGCACTAGGGCGG | + |
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Preference number: 3 (lower is better) Translates to: IFHYKPLNFSQI*YHMSVIPALGR Trigger: CCGCCCTAGTGCTGGAATCACAGACATGTGGTATCATATCTGGCTAAAGTTTAGAGGTTTGTAATGGAAAAT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000110706.2 ENSMUST00000124187.8 |
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| 3UTR-3UTR CAA 90 bp | TTTGTTTGTTTGTTTGTTTTGGAGTCAGGGTTTCTCTGTATAGCCCTGGCTGTCCCGGCTTTGTTACATTaGTTGAATGCTATCTACCAT | + |
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Preference number: 3 (lower is better) Translates to: FVCLFVLESGFLCIALAVPALLH*LNAIYH Trigger: ATGGTAGATAGCATTCAACAAATGTAACAAAGCCGG...GACAGCCAGGGCTATACAGAGAAACCCTGACTCCAAAACAAACAAACAAACAAA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000110706.2 ENSMUST00000124187.8 |
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| 3UTR TCA 72 bp | ATCCCACACAAACTACACTGTACAGTCTGTTCAAACTaGGCCCTTCTCAGCCTCTTATTACATAAGTTTCTA | + |
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Preference number: 3 (lower is better) Translates to: IPHKLHCTVCSN*ALLSLLLHKFL Trigger: TAGAAACTTATGTAATAAGAGGCTGAGAAGGGCTCAGTTTGAACAGACTGTACAGTGTAGTTTGTGTGGGAT 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000110706.2 ENSMUST00000124187.8 |
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| 3UTR GCA 72 bp | TCTTGTTCACCAAAATATCCATCTTGGCTAAAGCTTTaGTCATTTGCTTTAGGTTTGCGTCTAAATGAGGGC | + |
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Preference number: 3 (lower is better) Translates to: SCSPKYPSWLKL*SFALGLRLNEG Trigger: GCCCTCATTTAGACGCAAACCTAAAGCAAATGAGCAAAGCTTTAGCCAAGATGGATATTTTGGTGAACAAGA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028741.14 |
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| 3UTR-3UTR CAA 90 bp | GAGACATCTTTCTGGCTCCACTATTCCATTAATATTGCTAGCAAGAAAAACTATTGTAGTTCTCGCCACTaGAGTATATTCTCTGCCAGT | + |
|
Preference number: 3 (lower is better) Translates to: ETSFWLHYSINIASKKNYCSSRH*SIFSAS Trigger: ACTGGCAGAGAATATACTCAAGTGGCGAGAACTACA...ATAGTTTTTCTTGCTAGCAATATTAATGGAATAGTGGAGCCAGAAAGATGTCTC 39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000028741.14 |
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| CDS-3UTR CCA 90 bp | AAGTGTGGACACCATAGGATCGAGTATCTGTGGGAATCAGTGATCCCCTTCTGCAGTCTGCGAGGACGCTaGGTCCCACGGGTTGGCGGC | + |
|
Preference number: 4 (lower is better) Translates to: KCGHHRIEYLWESVIPFCSLRGR*VPRVGG Trigger: GCCGCCAACCCGTGGGACCCAGCGTCCTCGCAGACT...GCAGAAGGGGATCACTGATTCCCACAGATACTCGATCCTATGGTGTCCACACTT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000028741.14 ENSMUST00000124187.8 |
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| CDS-3UTR CCA 90 bp | TTGCTGGGAATTGAACTCAGGACCTGTGGTAGAGTGGCCAGTGCTCTTATCCCCAGTTCTCCTGGCACATaGGTCTCAGCAGTCTTTGCC | + |
|
Preference number: 4 (lower is better) Translates to: LLGIELRTCGRVASALIPSSPGT*VSAVFA Trigger: GGCAAAGACTGCTGAGACCCATGTGCCAGGAGAACT...GGGGATAAGAGCACTGGCCACTCTACCACAGGTCCTGAGTTCAATTCCCAGCAA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000110706.2 ENSMUST00000124187.8 |
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| 3UTR CAA 72 bp | ATAGATGGTGGTGAGCAACCTTGTGGTTGCTGGGAATaGAACTCAGGACCTGTGGTAGAGTGGCCAGTGCTC | + |
|
Preference number: 4 (lower is better) Translates to: IDGGEQPCGCWE*NSGPVVEWPVL Trigger: GAGCACTGGCCACTCTACCACAGGTCCTGAGTTCAATTCCCAGCAACCACAAGGTTGCTCACCACCATCTAT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000028741.14 ENSMUST00000110706.2 ENSMUST00000124187.8 |
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| CDS-3UTR CCA 90 bp | TTGCTGGGAATTGAACTCAGGACCTGTGGTAGAGTGGCCAGTGCTCTTATCCCCAATGGCAAGTTCTCCTaGCACATGGGTCTCAGCAGT | + |
|
Preference number: 4 (lower is better) Translates to: LLGIELRTCGRVASALIPNGKFS*HMGLSS Trigger: ACTGCTGAGACCCATGTGCCAGGAGAACTTGCCATT...GGGGATAAGAGCACTGGCCACTCTACCACAGGTCCTGAGTTCAATTCCCAGCAA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000110706.2 ENSMUST00000124187.8 |
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| CDS-3UTR GCA 90 bp | CCCCTTCTGCTAATGTGGATCCCAGGGACTGAACTCAGGCTGGAAGGCTTGAAGCTTTGCCTGATGGCATaGTTCTCTTTTAGCACTGCT | + |
|
Preference number: 4 (lower is better) Translates to: PLLLMWIPGTELRLEGLKLCLMA*FSFSTA Trigger: AGCAGTGCTAAAAGAGAAGCATGCCATCAGGCAAAG...CTTCAAGCCTTCCAGCCTGAGTTCAGTCCCTGGGATCCACATTAGCAGAAGGGG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000110706.2 ENSMUST00000124187.8 |
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| CDS-3UTR GCA 90 bp | AAACTGTTAGGGACGAGGTGCTCTGCAATGCCAGGGACCAGTACCAAAGGTACTGGTCTCAGCAGTCTTTaGCTGATGGCATGCTTCTCT | + |
|
Preference number: 4 (lower is better) Translates to: KLLGTRCSAMPGTSTKGTGLSSL*LMACFS Trigger: AGAGAAGCATGCCATCAGGCAAAGACTGCTGAGACC...AGTACCTTTGGTACTGGTCCCTGGCATTGCAGAGCACCTCGTCCCTAACAGTTT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000110706.2 ENSMUST00000124187.8 |
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| CDS-3UTR CCA 90 bp | CTCTGCAATGCCAGGGACCAGTACCAAAGGTACTTTCTACTTGGTACGGACCAAAGTTCTCCTGGCACATaGGTCTCAGCAGTCTTTGCC | + |
|
Preference number: 4 (lower is better) Translates to: LCNARDQYQRYFLLGTDQSSPGT*VSAVFA Trigger: GGCAAAGACTGCTGAGACCCATGTGCCAGGAGAACT...TTGGTCCGTACCAAGTAGAAAGTACCTTTGGTACTGGTCCCTGGCATTGCAGAG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000110706.2 ENSMUST00000124187.8 |
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| CDS-3UTR CCA 90 bp | CTCTGCAATGCCAGGGACCAGTACCAAAGGTACTTTCTACTTGGTACGGACCAAAATGGCAAGTTCTCCTaGCACATGGGTCTCAGCAGT | + |
|
Preference number: 4 (lower is better) Translates to: LCNARDQYQRYFLLGTDQNGKFS*HMGLSS Trigger: ACTGCTGAGACCCATGTGCCAGGAGAACTTGCCATT...TTGGTCCGTACCAAGTAGAAAGTACCTTTGGTACTGGTCCCTGGCATTGCAGAG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000110706.2 ENSMUST00000124187.8 |
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| CDS-3UTR CCA 90 bp | TTCTGGCTCCACTATTCCATTAATATTGCTAGCAAGAAAAACTATCAATATCCCAGTCTGCGAGGACGCTaGGTCCCACGGGTTGGCGGC | + |
|
Preference number: 4 (lower is better) Translates to: FWLHYSINIASKKNYQYPSLRGR*VPRVGG Trigger: GCCGCCAACCCGTGGGACCCAGCGTCCTCGCAGACT...GGGATATTGATAGTTTTTCTTGCTAGCAATATTAATGGAATAGTGGAGCCAGAA 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000028741.14 ENSMUST00000124187.8 |
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| CDS-3UTR CCA 90 bp | TTGCTGGGAATTGAACTCAGGACCTGTGGTAGAGTGGCCAGTGCTCTTATCCCCATAAACAGCTTCCAATaGCAAGTTCTCCTGGCACAT | + |
|
Preference number: 4 (lower is better) Translates to: LLGIELRTCGRVASALIPINSFQ*QVLLAH Trigger: ATGTGCCAGGAGAACTTGCCATTGGAAGCTGTTTAT...GGGGATAAGAGCACTGGCCACTCTACCACAGGTCCTGAGTTCAATTCCCAGCAA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000110706.2 ENSMUST00000124187.8 |
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| CDS-3UTR TCA 90 bp | TGCTCTGCTGCACATACATCTGCAGGCCAGAAGAGGGCATCAGACCCCCTTATAATCAAATGGGAAGGATaGATAAGATCTGCTGTATCC | + |
|
Preference number: 4 (lower is better) Translates to: CSAAHTSAGQKRASDPLIIKWEG*IRSAVS Trigger: GGATACAGCAGATCTTATTCATCCTTCCCATTTGAT...TATAAGGGGGTCTGATGCCCTCTTCTGGCCTGCAGATGTATGTGCAGCAGAGCA 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000110706.2 ENSMUST00000124187.8 |
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| CDS-3UTR TCA 90 bp | AAACTGTTAGGGACGAGGTGCTCTGCAATGCCAGGGACCAGTACCAAAGGTACTAGCACTGCTTCCAGATaGTTATTCATGCTTTGCAGA | + |
|
Preference number: 4 (lower is better) Translates to: KLLGTRCSAMPGTSTKGTSTASR*LFMLCR Trigger: TCTGCAAAGCATGAATAATCATCTGGAAGCAGTGCT...AGTACCTTTGGTACTGGTCCCTGGCATTGCAGAGCACCTCGTCCCTAACAGTTT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000110706.2 ENSMUST00000124187.8 |
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| CDS-3UTR GCA 90 bp | CCCCTTCTGCTAATGTGGATCCCAGGGACTGAACTCAGGCTGGAAGGCTTGAAGCTTGAGTATATTCTCTaGCAGTTCTTCTGTCTTGTT | + |
|
Preference number: 4 (lower is better) Translates to: PLLLMWIPGTELRLEGLKLEYIL*QFFCLV Trigger: AACAAGACAGAAGAACTGGCAGAGAATATACTCAAG...CTTCAAGCCTTCCAGCCTGAGTTCAGTCCCTGGGATCCACATTAGCAGAAGGGG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000110706.2 ENSMUST00000124187.8 |
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| CDS-3UTR GCA 90 bp | CCCCTTCTGCTAATGTGGATCCCAGGGACTGAACTCAGGCTGGAAGGCTTGAAGCCAGATGATTATTCATaGTTTGCAGAACATCACATT | + |
|
Preference number: 4 (lower is better) Translates to: PLLLMWIPGTELRLEGLKPDDYS*FAEHHI Trigger: AATGTGATGTTCTGCAAAGCATGAATAATCATCTGG...CTTCAAGCCTTCCAGCCTGAGTTCAGTCCCTGGGATCCACATTAGCAGAAGGGG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000110706.2 ENSMUST00000124187.8 |
||
| CDS-3UTR CCA 90 bp | AGTGCTCTGCTGCACATACATCTGCAGGCCAGAAGAGGGCATCAGACCCCCTTAAGATCTGTTGTAATCTaGAAAAGTTCACAAAGCAAG | + |
|
Preference number: 4 (lower is better) Translates to: SALLHIHLQARRGHQTPLRSVVI*KSSQSK Trigger: CTTGCTTTGTGAACTTTTCCAGATTACAACAGATCT...TAAGGGGGTCTGATGCCCTCTTCTGGCCTGCAGATGTATGTGCAGCAGAGCACT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000028741.14 ENSMUST00000110706.2 ENSMUST00000124187.8 |
||
| CDS-3UTR TCA 90 bp | AGAGGAGTTATGAGACTTGGTGTCATCACTCACAGCAGTGACTCAGTACAGCAAGTAGTTCTCGCCACTTaGGTATATTCTCTGCCAGTT | + |
|
Preference number: 4 (lower is better) Translates to: RGVMRLGVITHSSDSVQQVVLAT*VYSLPV Trigger: AACTGGCAGAGAATATACTCAAGTGGCGAGAACTAC...TTGCTGTACTGAGTCACTGCTGTGAGTGATGACACCAAGTCTCATAACTCCTCT 46% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000110706.2 ENSMUST00000124187.8 |
||
| CDS-3UTR TCA 90 bp | AAGTGTGGACACCATAGGATCGAGTATCTGTGGGAATCAGTGATCCCCTTCTGCACTATGTCAAGTTCATaGAGATGGCGTTCTTCAGTT | + |
|
Preference number: 4 (lower is better) Translates to: KCGHHRIEYLWESVIPFCTMSSS*RWRSSV Trigger: AACTGAAGAACGCCATCTTCATGAACTTGACATAGT...GCAGAAGGGGATCACTGATTCCCACAGATACTCGATCCTATGGTGTCCACACTT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000110706.2 ENSMUST00000124187.8 |
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| CDS-3UTR GCA 90 bp | TGCTCTGCTGCACATACATCTGCAGGCCAGAAGAGGGCATCAGACCCCCTTATACCAGATGATTATTCATaGTTTGCAGAACATCACATT | + |
|
Preference number: 4 (lower is better) Translates to: CSAAHTSAGQKRASDPLIPDDYS*FAEHHI Trigger: AATGTGATGTTCTGCAAAGCATGAATAATCATCTGG...TATAAGGGGGTCTGATGCCCTCTTCTGGCCTGCAGATGTATGTGCAGCAGAGCA 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000110706.2 ENSMUST00000124187.8 |
||
| CDS-3UTR GCA 90 bp | TGGGAATTGAACTCAGGACCTGTGGTAGAGTGGCCAGTGCTCTTATCCCCTGAGAAAGCTTTGCTCATTTaGTTTAGGTTTGCGTCTAAA | + |
|
Preference number: 4 (lower is better) Translates to: WELNSGPVVEWPVLLSPEKALLI*FRFASK Trigger: TTTAGACGCAAACCTAAAGCAAATGAGCAAAGCTTT...CTCAGGGGATAAGAGCACTGGCCACTCTACCACAGGTCCTGAGTTCAATTCCCA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000110706.2 ENSMUST00000124187.8 |
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| CDS-3UTR GCA 90 bp | AAACTGTTAGGGACGAGGTGCTCTGCAATGCCAGGGACCAGTACCAAAGGTACTCTTGAGTATATTCTCTaGCAGTTCTTCTGTCTTGTT | + |
|
Preference number: 4 (lower is better) Translates to: KLLGTRCSAMPGTSTKGTLEYIL*QFFCLV Trigger: AACAAGACAGAAGAACTGGCAGAGAATATACTCAAG...AGTACCTTTGGTACTGGTCCCTGGCATTGCAGAGCACCTCGTCCCTAACAGTTT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000110706.2 ENSMUST00000124187.8 |
||
| 3UTR CAA 72 bp | TTCAAGACAATAATCTATTGTTTTAGCAGGGCCCTTTaGGAGGTTGGGGGTAGGGTAAAGACCCTGCTTCCT | + |
|
Preference number: 4 (lower is better) Translates to: FKTIIYCFSRAL*EVGGRVKTLLP Trigger: AGGAAGCAGGGTCTTTACCCTACCCCCAACCTCCAAAAGGGCCCTGCTAAAACAATAGATTATTGTCTTGAA 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000110706.2 ENSMUST00000124187.8 |
||
| CDS-3UTR TCA 90 bp | TGTGCTCGCTCTCTCATGTGCGCGTGCACATACATACATACATACATACACACAAGCACTGCTTCCAGATaGTTATTCATGCTTTGCAGA | + |
|
Preference number: 4 (lower is better) Translates to: CARSLMCACTYIHTYIHTSTASR*LFMLCR Trigger: TCTGCAAAGCATGAATAATCATCTGGAAGCAGTGCT...TGTGTGTATGTATGTATGTATGTATGTGCACGCGCACATGAGAGAGCGAGCACA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000110706.2 ENSMUST00000124187.8 |
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| CDS-3UTR CCA 90 bp | AAACTGTTAGGGACGAGGTGCTCTGCAATGCCAGGGACCAGTACCAAAGGTACTAGATCTGTTGTAATCTaGAAAAGTTCACAAAGCAAG | + |
|
Preference number: 4 (lower is better) Translates to: KLLGTRCSAMPGTSTKGTRSVVI*KSSQSK Trigger: CTTGCTTTGTGAACTTTTCCAGATTACAACAGATCT...AGTACCTTTGGTACTGGTCCCTGGCATTGCAGAGCACCTCGTCCCTAACAGTTT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000110706.2 ENSMUST00000124187.8 |
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| CDS-3UTR CCA 90 bp | GAGCATGATGAGCAGGTTTGCTACACTCCCACAGTGCAGAATAAAACAGTAAGGATAAACAGCTTCCAATaGCAAGTTCTCCTGGCACAT | + |
|
Preference number: 4 (lower is better) Translates to: EHDEQVCYTPTVQNKTVRINSFQ*QVLLAH Trigger: ATGTGCCAGGAGAACTTGCCATTGGAAGCTGTTTAT...CCTTACTGTTTTATTCTGCACTGTGGGAGTGTAGCAAACCTGCTCATCATGCTC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000110706.2 ENSMUST00000124187.8 |
||
| CDS-3UTR TCA 90 bp | AGAGGAGTTATGAGACTTGGTGTCATCACTCACAGCAGTGACTCAGTACAGCAAATCAAATGGGAAGGATaGATAAGATCTGCTGTATCC | + |
|
Preference number: 4 (lower is better) Translates to: RGVMRLGVITHSSDSVQQIKWEG*IRSAVS Trigger: GGATACAGCAGATCTTATTCATCCTTCCCATTTGAT...TTGCTGTACTGAGTCACTGCTGTGAGTGATGACACCAAGTCTCATAACTCCTCT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000110706.2 ENSMUST00000124187.8 |
||
| CDS-3UTR TCA 90 bp | TGTGCTCGCTCTCTCATGTGCGCGTGCACATACATACATACATACATACACACAACTATGTCAAGTTCATaGAGATGGCGTTCTTCAGTT | + |
|
Preference number: 4 (lower is better) Translates to: CARSLMCACTYIHTYIHTTMSSS*RWRSSV Trigger: AACTGAAGAACGCCATCTTCATGAACTTGACATAGT...TGTGTGTATGTATGTATGTATGTATGTGCACGCGCACATGAGAGAGCGAGCACA 43% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000110706.2 ENSMUST00000124187.8 |
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| CDS-3UTR CCA 90 bp | AAGTGTGGACACCATAGGATCGAGTATCTGTGGGAATCAGTGATCCCCTTCTGCAGATCTGTTGTAATCTaGAAAAGTTCACAAAGCAAG | + |
|
Preference number: 4 (lower is better) Translates to: KCGHHRIEYLWESVIPFCRSVVI*KSSQSK Trigger: CTTGCTTTGTGAACTTTTCCAGATTACAACAGATCT...GCAGAAGGGGATCACTGATTCCCACAGATACTCGATCCTATGGTGTCCACACTT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000028741.14 ENSMUST00000110706.2 ENSMUST00000124187.8 |
||
| 3UTR CAA 72 bp | TCTAAACTTTTACACGAAGACTCCGTTTCTTCTCTGTaGGTCCTCAGCGTTTATTTCCTAACACAGCCAGGT | + |
|
Preference number: 4 (lower is better) Translates to: SKLLHEDSVSSL*VLSVYFLTQPG Trigger: ACCTGGCTGTGTTAGGAAATAAACGCTGAGGACCAACAGAGAAGAAACGGAGTCTTCGTGTAAAAGTTTAGA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000110706.2 ENSMUST00000124187.8 |
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| 3UTR CAA 72 bp | ACCACCCTGGGAAACATAGTGAGTTCAAGTTCTGCCTaGGCTACATATAGGAAGTACCAAAACAAAGAATTC | + |
|
Preference number: 4 (lower is better) Translates to: TTLGNIVSSSSA*ATYRKYQNKEF Trigger: GAATTCTTTGTTTTGGTACTTCCTATATGTAGCCAAGGCAGAACTTGAACTCACTATGTTTCCCAGGGTGGT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000110706.2 ENSMUST00000124187.8 |
||
| CDS-3UTR CCA 90 bp | AGAGGAGTTATGAGACTTGGTGTCATCACTCACAGCAGTGACTCAGTACAGCAACCAAAATATCCATCTTaGCTAAAGCTTTGCTCATTT | + |
|
Preference number: 4 (lower is better) Translates to: RGVMRLGVITHSSDSVQQPKYPS*LKLCSF Trigger: AAATGAGCAAAGCTTTAGCCAAGATGGATATTTTGG...TTGCTGTACTGAGTCACTGCTGTGAGTGATGACACCAAGTCTCATAACTCCTCT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000110706.2 ENSMUST00000124187.8 |
||
| CDS-3UTR GCA 90 bp | TTTGTTTGTTTGTTTGTTTTGGAGTCAGGGTTTCTCTGTATAGCCCTGGCTGTCAAAGCTTTGCTCATTTaGTTTAGGTTTGCGTCTAAA | + |
|
Preference number: 4 (lower is better) Translates to: FVCLFVLESGFLCIALAVKALLI*FRFASK Trigger: TTTAGACGCAAACCTAAAGCAAATGAGCAAAGCTTT...GACAGCCAGGGCTATACAGAGAAACCCTGACTCCAAAACAAACAAACAAACAAA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000110706.2 ENSMUST00000124187.8 |
||
| 3UTR CAA 72 bp | ATATACAAGGAAATTTCTGTTTGTAGTTCTCGCCACTaGAGTATATTCTCTGCCAGTTCTTCTGTCTTGTTC | + |
|
Preference number: 4 (lower is better) Translates to: IYKEISVCSSRH*SIFSASSSVLF Trigger: GAACAAGACAGAAGAACTGGCAGAGAATATACTCAAGTGGCGAGAACTACAAACAGAAATTTCCTTGTATAT 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028741.14 |
||
| 3UTR CAA 72 bp | GGCGAAGTACTTACAGGACTGATGAGTGAGAAAATCTaGAGACAATTGTTACAATCTCTACTTTTAAGTATA | + |
|
Preference number: 4 (lower is better) Translates to: GEVLTGLMSEKI*RQLLQSLLLSI Trigger: TATACTTAAAAGTAGAGATTGTAACAATTGTCTCAAGATTTTCTCACTCATCAGTCCTGTAAGTACTTCGCC 35% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000110706.2 ENSMUST00000124187.8 |
||
| CDS-3UTR CCA 90 bp | GAGACATCTTTCTGGCTCCACTATTCCATTAATATTGCTAGCAAGAAAAACTATCCAAAATATCCATCTTaGCTAAAGCTTTGCTCATTT | + |
|
Preference number: 4 (lower is better) Translates to: ETSFWLHYSINIASKKNYPKYPS*LKLCSF Trigger: AAATGAGCAAAGCTTTAGCCAAGATGGATATTTTGG...ATAGTTTTTCTTGCTAGCAATATTAATGGAATAGTGGAGCCAGAAAGATGTCTC 34% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000110706.2 ENSMUST00000124187.8 |
||
| CDS-3UTR CAA 90 bp | TGGGAATTGAACTCAGGACCTGTGGTAGAGTGGCCAGTGCTCTTATCCCCTGAGTGTAGTTCTCGCCACTaGAGTATATTCTCTGCCAGT | + |
|
Preference number: 5 (lower is better) Translates to: WELNSGPVVEWPVLLSPECSSRH*SIFSAS Trigger: ACTGGCAGAGAATATACTCAAGTGGCGAGAACTACA...CTCAGGGGATAAGAGCACTGGCCACTCTACCACAGGTCCTGAGTTCAATTCCCA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000110706.2 ENSMUST00000124187.8 |
||
| CDS TCA 90 bp | CCAATGGCAAGTTCTCCTGGCACATGGGTCTCAGCAGTCTTTGCCTaGTGGCATGCTTCTCTTTTAGCACTGCTTCCAGATGATTATTCA | + |
|
Preference number: 5 (lower is better) Translates to: PMASSPGTWVSAVFA*WHASLLALLPDDYS Trigger: TGAATAATCATCTGGAAGCAGTGCTAAAAGAGAAGCATGCCATCAGGCAAAGACTGCTGAGACCCATGTGCCAGGAGAACTTGCCATTGG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000110706.2 ENSMUST00000124187.8 |
||
| CDS-3UTR CAA 90 bp | TTTGTTTGTTTGTTTGTTTTGGAGTCAGGGTTTCTCTGTATAGCCCTGGCTGTCTGTAGTTCTCGCCACTaGAGTATATTCTCTGCCAGT | + |
|
Preference number: 5 (lower is better) Translates to: FVCLFVLESGFLCIALAVCSSRH*SIFSAS Trigger: ACTGGCAGAGAATATACTCAAGTGGCGAGAACTACA...GACAGCCAGGGCTATACAGAGAAACCCTGACTCCAAAACAAACAAACAAACAAA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000110706.2 ENSMUST00000124187.8 |
||
| CDS TCA 90 bp | AGTCTTTGCCTGATGGCATGCTTCTCTTTTAGCACTGCTTCCAGATaGTTATTCATGCTTTGCAGAACATCACATTTCTCAATCAAATGG | + |
|
Preference number: 5 (lower is better) Translates to: SLCLMACFSFSTASR*LFMLCRTSHFSIKW Trigger: CCATTTGATTGAGAAATGTGATGTTCTGCAAAGCATGAATAATCATCTGGAAGCAGTGCTAAAAGAGAAGCATGCCATCAGGCAAAGACT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000110706.2 ENSMUST00000124187.8 |
||
| CDS TCA 90 bp | TTCATGCTTTGCAGAACATCACATTTCTCAATCAAATGGGAAGGATaGATAAGATCTGCTGTATCCTTTTCTAGCTTCAAAAGTTCAAGT | + |
|
Preference number: 5 (lower is better) Translates to: FMLCRTSHFSIKWEG*IRSAVSFSSFKSSS Trigger: ACTTGAACTTTTGAAGCTAGAAAAGGATACAGCAGATCTTATTCATCCTTCCCATTTGATTGAGAAATGTGATGTTCTGCAAAGCATGAA 36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000110706.2 ENSMUST00000124187.8 |
||
| CDS GCA 72 bp | GCTACCAAGTGGTTTAGCAGTAACCCAGCTGCAGTCTaGGAGGACGCTGGGTCCCACGGGTTGGCGGCCGCC | + |
|
Preference number: 6 (lower is better) Translates to: ATKWFSSNPAAV*EDAGSHGLAAA Trigger: GGCGGCCGCCAACCCGTGGGACCCAGCGTCCTCGCAGACTGCAGCTGGGTTACTGCTAAACCACTTGGTAGC 65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000028741.14 ENSMUST00000124187.8 |
||
| CDS GCA 72 bp | GCTTCTCTTTTAGCACTGCTTCCAGATGATTATTCATaGTTTGCAGAACATCACATTTCTCAATCAAATGGG | + |
|
Preference number: 6 (lower is better) Translates to: ASLLALLPDDYS*FAEHHISQSNG Trigger: CCCATTTGATTGAGAAATGTGATGTTCTGCAAAGCATGAATAATCATCTGGAAGCAGTGCTAAAAGAGAAGC 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000110706.2 ENSMUST00000124187.8 |
||
| CDS TCA 72 bp | TGCAGAACATCACATTTCTCAATCAAATGGGAAGGATaGATAAGATCTGCTGTATCCTTTTCTAGCTTCAAA | + |
|
Preference number: 6 (lower is better) Translates to: CRTSHFSIKWEG*IRSAVSFSSFK Trigger: TTTGAAGCTAGAAAAGGATACAGCAGATCTTATTCATCCTTCCCATTTGATTGAGAAATGTGATGTTCTGCA 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000110706.2 ENSMUST00000124187.8 |
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