Pregenerated sensors for HAUS1 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000041840

Ensembl transcript IDs: ENSMUST00000048192.9, ENSMUST00000236234.2

Found 18 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type	Sensor	Details
3UTR-3UTR TCA 90 bp	GGCAGAAGCGAACCCTGTTGTTTTACTAATAGAGACATCATCATCTCTAAGAACGTCACCTCCTTCCCCTaGCCACGTCTACATGGCTGT	+
Preference number: 2 (lower is better) Translates to: GRSEPCCFTNRDIIISKNVTSFP*PRLHGC Trigger: ACAGCCATGTAGACGTGGTCAGGGGAAGGAGGTGAC...GTTCTTAGAGATGATGATGTCTCTATTAGTAAAACAACAGGGTTCGCTTCTGCC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000048192.9 ENSMUST00000236234.2
CDS-3UTR TCA 90 bp	ATCATCATCTCTAAGAACAGTCACCTCCTTCCCCTGACCACGTCTACATGGCTGAACCACTCAGCGACCTaGCATTCAGGAAGTCCTGGG	+
Preference number: 4 (lower is better) Translates to: IIISKNSHLLPLTTSTWLNHSAT*HSGSPG Trigger: CCCAGGACTTCCTGAATGTCAGGTCGCTGAGTGGTT...CAGCCATGTAGACGTGGTCAGGGGAAGGAGGTGACTGTTCTTAGAGATGATGAT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000236234.2
CDS-3UTR CCA 90 bp	ATCATCTCTAAGAACAGTCACCTCCTTCCCCTGACCACGTCTACATGGCTGTCCTATTGTGGGATGGGATaGTCTCCAAATACCTTTTTC	+
Preference number: 4 (lower is better) Translates to: IISKNSHLLPLTTSTWLSYCGMG*SPNTFF Trigger: GAAAAAGGTATTTGGAGACCATCCCATCCCACAATA...GGACAGCCATGTAGACGTGGTCAGGGGAAGGAGGTGACTGTTCTTAGAGATGAT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000048192.9 ENSMUST00000236234.2
CDS-3UTR GCA 90 bp	GCGAACCCTGTTGTTTTACTAATAGAGACATCATCATCTCTAAGAACAGTCACCAACCTTGGCCTTTTCTaGAGACAGTTGCAGCTCTGC	+
Preference number: 4 (lower is better) Translates to: ANPVVLLIETSSSLRTVTNLGLF*RQLQLC Trigger: GCAGAGCTGCAACTGTCTGCAGAAAAGGCCAAGGTT...GGTGACTGTTCTTAGAGATGATGATGTCTCTATTAGTAAAACAACAGGGTTCGC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000048192.9 ENSMUST00000236234.2
CDS-3UTR CCA 90 bp	CCACAAAGTTTAAAGGCAGAAGCGAACCCTGTTGTTTTACTAATAGAGACATCAGGCGACTGTCAACCTTaGCCTTTTCTGCAGACAGTT	+
Preference number: 4 (lower is better) Translates to: PQSLKAEANPVVLLIETSGDCQP*PFLQTV Trigger: AACTGTCTGCAGAAAAGGCCAAGGTTGACAGTCGCC...TGATGTCTCTATTAGTAAAACAACAGGGTTCGCTTCTGCCTTTAAACTTTGTGG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000048192.9 ENSMUST00000236234.2
CDS-3UTR GCA 90 bp	CAAAGTTTAAAGGCAGAAGCGAACCCTGTTGTTTTACTAATAGAGACATCATCAAACCTTGGCCTTTTCTaGAGACAGTTGCAGCTCTGC	+
Preference number: 4 (lower is better) Translates to: QSLKAEANPVVLLIETSSNLGLF*RQLQLC Trigger: GCAGAGCTGCAACTGTCTGCAGAAAAGGCCAAGGTT...TGATGATGTCTCTATTAGTAAAACAACAGGGTTCGCTTCTGCCTTTAAACTTTG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000048192.9 ENSMUST00000236234.2
CDS-3UTR CCA 90 bp	CAGGCCACAAAGTTTAAAGGCAGAAGCGAACCCTGTTGTTTTACTAATAGAGACTCTCATATTGTGGGATaGGATGGTCTCCAAATACCT	+
Preference number: 4 (lower is better) Translates to: QATKFKGRSEPCCFTNRDSHIVG*DGLQIP Trigger: AGGTATTTGGAGACCATCCCATCCCACAATATGAGA...GTCTCTATTAGTAAAACAACAGGGTTCGCTTCTGCCTTTAAACTTTGTGGCCTG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000048192.9 ENSMUST00000236234.2
CDS-3UTR GCA 90 bp	GCGAACCCTGTTGTTTTACTAATAGAGACATCATCATCTCTAAGAACAGTCACCTATTTCCAGGGCAATTaGACTGTCTACCAGTGCATT	+
Preference number: 4 (lower is better) Translates to: ANPVVLLIETSSSLRTVTYFQGN*TVYQCI Trigger: AATGCACTGGTAGACAGTGCAATTGCCCTGGAAATA...GGTGACTGTTCTTAGAGATGATGATGTCTCTATTAGTAAAACAACAGGGTTCGC 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000048192.9 ENSMUST00000236234.2
CDS-3UTR GCA 90 bp	GCCACAAAGTTTAAAGGCAGAAGCGAACCCTGTTGTTTTACTAATAGAGACATCTATTTCCAGGGCAATTaGACTGTCTACCAGTGCATT	+
Preference number: 4 (lower is better) Translates to: ATKFKGRSEPCCFTNRDIYFQGN*TVYQCI Trigger: AATGCACTGGTAGACAGTGCAATTGCCCTGGAAATA...GATGTCTCTATTAGTAAAACAACAGGGTTCGCTTCTGCCTTTAAACTTTGTGGC 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000048192.9 ENSMUST00000236234.2
CDS-3UTR CCA 90 bp	TGTTTTACTAATAGAGACATCATCATCTCTAAGAACAGTCACCTCCTTCCCCTGTCTCATATTGTGGGATaGGATGGTCTCCAAATACCT	+
Preference number: 4 (lower is better) Translates to: CFTNRDIIISKNSHLLPLSHIVG*DGLQIP Trigger: AGGTATTTGGAGACCATCCCATCCCACAATATGAGA...CAGGGGAAGGAGGTGACTGTTCTTAGAGATGATGATGTCTCTATTAGTAAAACA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000048192.9 ENSMUST00000236234.2
CDS-3UTR CCA 90 bp	GCCACAAAGTTTAAAGGCAGAAGCGAACCCTGTTGTTTTACTAATAGAGACATCTATTGTGGGATGGGATaGTCTCCAAATACCTTTTTC	+
Preference number: 4 (lower is better) Translates to: ATKFKGRSEPCCFTNRDIYCGMG*SPNTFF Trigger: GAAAAAGGTATTTGGAGACCATCCCATCCCACAATA...GATGTCTCTATTAGTAAAACAACAGGGTTCGCTTCTGCCTTTAAACTTTGTGGC 40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000048192.9 ENSMUST00000236234.2
CDS-3UTR CCA 90 bp	AGAAGCGAACCCTGTTGTTTTACTAATAGAGACATCATCATCTCTAAGAACAGTACATTCAGGAAGTCCTaGGTTGGATATCCCAGGTAT	+
Preference number: 4 (lower is better) Translates to: RSEPCCFTNRDIIISKNSTFRKS*VGYPRY Trigger: ATACCTGGGATATCCAACCCAGGACTTCCTGAATGT...ACTGTTCTTAGAGATGATGATGTCTCTATTAGTAAAACAACAGGGTTCGCTTCT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000236234.2
CDS-3UTR CAA 90 bp	ATCATCATCTCTAAGAACAGTCACCTCCTTCCCCTGACCACGTCTACATGGCTGTTATTTCCAGGGCAATaGCACTGTCTACCAGTGCAT	+
Preference number: 5 (lower is better) Translates to: IIISKNSHLLPLTTSTWLLFPGQ*HCLPVH Trigger: ATGCACTGGTAGACAGTGCAATTGCCCTGGAAATAA...CAGCCATGTAGACGTGGTCAGGGGAAGGAGGTGACTGTTCTTAGAGATGATGAT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000048192.9 ENSMUST00000236234.2
CDS CCA 90 bp	AAATACCTTTTTCAACCACTCAGCGACCTGACATTCAGGAAGTCCTaGGTTGGATATCCCAGGTATACTGTATTTGATAGCACGCATTTG	+
Preference number: 5 (lower is better) Translates to: KYLFQPLSDLTFRKS*VGYPRYTVFDSTHL Trigger: CAAATGCGTGCTATCAAATACAGTATACCTGGGATATCCAACCCAGGACTTCCTGAATGTCAGGTCGCTGAGTGGTTGAAAAAGGTATTT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000236234.2
CDS-3UTR CAA 90 bp	AGAAGCGAACCCTGTTGTTTTACTAATAGAGACATCATCATCTCTAAGAACAGTTTATTTCCAGGGCAATaGCACTGTCTACCAGTGCAT	+
Preference number: 5 (lower is better) Translates to: RSEPCCFTNRDIIISKNSLFPGQ*HCLPVH Trigger: ATGCACTGGTAGACAGTGCAATTGCCCTGGAAATAA...ACTGTTCTTAGAGATGATGATGTCTCTATTAGTAAAACAACAGGGTTCGCTTCT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000048192.9 ENSMUST00000236234.2
CDS TCA 72 bp	TGGTCTCCAAATACCTTTTTCAACCACTCAGCGACCTaGCATTCAGGAAGTCCTGGGTTGGATATCCCAGGT	+
Preference number: 6 (lower is better) Translates to: WSPNTFFNHSAT*HSGSPGLDIPG Trigger: ACCTGGGATATCCAACCCAGGACTTCCTGAATGTCAGGTCGCTGAGTGGTTGAAAAAGGTATTTGGAGACCA 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000236234.2
CDS CCA 72 bp	GTCGTCCGTGAGTTCATCTCATATTGTGGGATGGGATaGTCTCCAAATACCTTTTTCAACCACTCAGCGACC	+
Preference number: 6 (lower is better) Translates to: VVREFISYCGMG*SPNTFFNHSAT Trigger: GGTCGCTGAGTGGTTGAAAAAGGTATTTGGAGACCATCCCATCCCACAATATGAGATGAACTCACGGACGAC 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000048192.9 ENSMUST00000236234.2
CDS CCA 72 bp	TTTCAACCACTCAGCGACCTGACATTCAGGAAGTCCTaGGTTGGATATCCCAGGTATACTGTATTTGATAGC	+
Preference number: 6 (lower is better) Translates to: FQPLSDLTFRKS*VGYPRYTVFDS Trigger: GCTATCAAATACAGTATACCTGGGATATCCAACCCAGGACTTCCTGAATGTCAGGTCGCTGAGTGGTTGAAA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000236234.2