Pregenerated sensors for HAT1 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000027018Ensembl transcript IDs: ENSMUST00000028408.3, ENSMUST00000112122.9
Found 73 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR-3UTR GCA 90 bp | TTTTACTGTTTAAGAAGAAAGCAGTGGGCGGTGGTATTTCACAAGCCATCTTTTCGATGCACAGAAATCTaGAGGTATTCTGGGGAACAA | + |
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Preference number: 2 (lower is better) Translates to: FYCLRRKQWAVVFHKPSFRCTEI*RYSGEQ Trigger: TTGTTCCCCAGAATACCTGCAGATTTCTGTGCATCG...AAAAGATGGCTTGTGAAATACCACCGCCCACTGCTTTCTTCTTAAACAGTAAAA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000028408.3 ENSMUST00000112122.9 |
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| CDS-3UTR CCA 90 bp | AGAGGTTCACAGCACGATGCACAGAAATCTGCAGGTATTCTGGGGAACAAGGGCGCTCGATTGCTGTGTTaGTGTTACACTTGTACTCTG | + |
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Preference number: 4 (lower is better) Translates to: RGSQHDAQKSAGILGNKGARLLC*CYTCTL Trigger: CAGAGTACAAGTGTAACACCAACACAGCAATCGAGC...GCCCTTGTTCCCCAGAATACCTGCAGATTTCTGTGCATCGTGCTGTGAACCTCT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000028408.3 ENSMUST00000112122.9 |
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| CDS-3UTR CCA 90 bp | ATCAGAGGTTCACAGCACGATGCACAGAAATCTGCAGGTATTCTGGGGAACAAGCATCTGACTTACACGTaGCCGGGTTTTGTCTGGGTA | + |
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Preference number: 4 (lower is better) Translates to: IRGSQHDAQKSAGILGNKHLTYT*PGFVWV Trigger: TACCCAGACAAAACCCGGCCACGTGTAAGTCAGATG...CTTGTTCCCCAGAATACCTGCAGATTTCTGTGCATCGTGCTGTGAACCTCTGAT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000028408.3 ENSMUST00000112122.9 |
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| CDS-3UTR GCA 90 bp | AGAGGTTCACAGCACGATGCACAGAAATCTGCAGGTATTCTGGGGAACAAGGGCGCCTTCAACATCATCTaGCTCCACACAATCAAAGTT | + |
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Preference number: 4 (lower is better) Translates to: RGSQHDAQKSAGILGNKGAFNII*LHTIKV Trigger: AACTTTGATTGTGTGGAGGCAGATGATGTTGAAGGC...GCCCTTGTTCCCCAGAATACCTGCAGATTTCTGTGCATCGTGCTGTGAACCTCT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000028408.3 ENSMUST00000112122.9 |
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| CDS-3UTR GCA 90 bp | GGTCATCAGAGGTTCACAGCACGATGCACAGAAATCTGCAGGTATTCTGGGGAATCTTCACTGAATCCTTaGAGTAATCTTTCCCGGGAG | + |
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Preference number: 4 (lower is better) Translates to: GHQRFTARCTEICRYSGESSLNP*SNLSRE Trigger: CTCCCGGGAAAGATTACTGCAAGGATTCAGTGAAGA...TTCCCCAGAATACCTGCAGATTTCTGTGCATCGTGCTGTGAACCTCTGATGACC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000028408.3 ENSMUST00000112122.9 |
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| CDS-3UTR GCA 90 bp | AGAGGTTCACAGCACGATGCACAGAAATCTGCAGGTATTCTGGGGAACAAGGGCTTGCTGTGCCTGTATTaGCATATCTTCACTGAATCC | + |
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Preference number: 4 (lower is better) Translates to: RGSQHDAQKSAGILGNKGLLCLY*HIFTES Trigger: GGATTCAGTGAAGATATGGCAATACAGGCACAGCAA...GCCCTTGTTCCCCAGAATACCTGCAGATTTCTGTGCATCGTGCTGTGAACCTCT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000028408.3 ENSMUST00000112122.9 |
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| CDS-3UTR CCA 90 bp | TTTAGGGTCATCAGAGGTTCACAGCACGATGCACAGAAATCTGCAGGTATTCTGCATCTGACTTACACGTaGCCGGGTTTTGTCTGGGTA | + |
|
Preference number: 4 (lower is better) Translates to: FRVIRGSQHDAQKSAGILHLTYT*PGFVWV Trigger: TACCCAGACAAAACCCGGCCACGTGTAAGTCAGATG...CAGAATACCTGCAGATTTCTGTGCATCGTGCTGTGAACCTCTGATGACCCTAAA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000028408.3 ENSMUST00000112122.9 |
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| CDS-3UTR CCA 90 bp | ATCAGAGGTTCACAGCACGATGCACAGAAATCTGCAGGTATTCTGGGGAACAAGGCCCTGACCTTGAAATaGAGTCAGTATCAGCATCTG | + |
|
Preference number: 4 (lower is better) Translates to: IRGSQHDAQKSAGILGNKALTLK*SQYQHL Trigger: CAGATGCTGATACTGACTCCATTTCAAGGTCAGGGC...CTTGTTCCCCAGAATACCTGCAGATTTCTGTGCATCGTGCTGTGAACCTCTGAT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000028408.3 ENSMUST00000112122.9 |
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| CDS-3UTR CCA 90 bp | AGAGGTTCACAGCACGATGCACAGAAATCTGCAGGTATTCTGGGGAACAAGGGCGGCATTTCTTCATCTTaGCAAGATCCCTCTGCTTTT | + |
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Preference number: 4 (lower is better) Translates to: RGSQHDAQKSAGILGNKGGISSS*QDPSAF Trigger: AAAAGCAGAGGGATCTTGCCAAGATGAAGAAATGCC...GCCCTTGTTCCCCAGAATACCTGCAGATTTCTGTGCATCGTGCTGTGAACCTCT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000028408.3 ENSMUST00000112122.9 |
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| CDS-3UTR TCA 90 bp | GGTCATCAGAGGTTCACAGCACGATGCACAGAAATCTGCAGGTATTCTGGGGAATCTATCTGGTTCATCTaGTTTGTCAGCTCTTCTGGT | + |
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Preference number: 4 (lower is better) Translates to: GHQRFTARCTEICRYSGESIWFI*FVSSSG Trigger: ACCAGAAGAGCTGACAAATCAGATGAACCAGATAGA...TTCCCCAGAATACCTGCAGATTTCTGTGCATCGTGCTGTGAACCTCTGATGACC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000028408.3 ENSMUST00000112122.9 |
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| CDS-3UTR GCA 90 bp | ATCAGAGGTTCACAGCACGATGCACAGAAATCTGCAGGTATTCTGGGGAACAAGTCCAGCTGCTCATGCTaGACACTTATTTCTATCTGG | + |
|
Preference number: 4 (lower is better) Translates to: IRGSQHDAQKSAGILGNKSSCSC*TLISIW Trigger: CCAGATAGAAATAAGTGTGCAGCATGAGCAGCTGGA...CTTGTTCCCCAGAATACCTGCAGATTTCTGTGCATCGTGCTGTGAACCTCTGAT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000028408.3 ENSMUST00000112122.9 |
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| CDS-3UTR GCA 90 bp | GGTCATCAGAGGTTCACAGCACGATGCACAGAAATCTGCAGGTATTCTGGGGAATCTTCCAGCTGCTCATaGTGCACACTTATTTCTATC | + |
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Preference number: 4 (lower is better) Translates to: GHQRFTARCTEICRYSGESSSCS*CTLISI Trigger: GATAGAAATAAGTGTGCAGCATGAGCAGCTGGAAGA...TTCCCCAGAATACCTGCAGATTTCTGTGCATCGTGCTGTGAACCTCTGATGACC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000028408.3 ENSMUST00000112122.9 |
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| CDS-3UTR CCA 90 bp | GGTCATCAGAGGTTCACAGCACGATGCACAGAAATCTGCAGGTATTCTGGGGAATCAGCCTTGTGGATCTaGAAAGTAAAGGTTTCACCT | + |
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Preference number: 4 (lower is better) Translates to: GHQRFTARCTEICRYSGESALWI*KVKVSP Trigger: AGGTGAAACCTTTACTTTCCAGATCCACAAGGCTGA...TTCCCCAGAATACCTGCAGATTTCTGTGCATCGTGCTGTGAACCTCTGATGACC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000028408.3 ENSMUST00000112122.9 |
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| CDS-3UTR TCA 90 bp | TTTAGGGTCATCAGAGGTTCACAGCACGATGCACAGAAATCTGCAGGTATTCTGTCATCCCCAAAGAGCTaGTGGGTATATTCAGGAAAG | + |
|
Preference number: 4 (lower is better) Translates to: FRVIRGSQHDAQKSAGILSSPKS*WVYSGK Trigger: CTTTCCTGAATATACCCATCAGCTCTTTGGGGATGA...CAGAATACCTGCAGATTTCTGTGCATCGTGCTGTGAACCTCTGATGACCCTAAA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000028408.3 ENSMUST00000112122.9 |
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| CDS-3UTR TCA 90 bp | TTTAGGGTCATCAGAGGTTCACAGCACGATGCACAGAAATCTGCAGGTATTCTGAACACGGAACAGTGTTaGCAGGCTACCAGCAATATA | + |
|
Preference number: 4 (lower is better) Translates to: FRVIRGSQHDAQKSAGILNTEQC*QATSNI Trigger: TATATTGCTGGTAGCCTGTCAACACTGTTCCGTGTT...CAGAATACCTGCAGATTTCTGTGCATCGTGCTGTGAACCTCTGATGACCCTAAA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000028408.3 ENSMUST00000112122.9 |
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| CDS-3UTR TCA 90 bp | TTTAGGGTCATCAGAGGTTCACAGCACGATGCACAGAAATCTGCAGGTATTCTGGTTTCACCTCCTGTCTaGCTAGGAACTGTGTATGTA | + |
|
Preference number: 4 (lower is better) Translates to: FRVIRGSQHDAQKSAGILVSPPV*LGTVYV Trigger: TACATACACAGTTCCTAGTCAGACAGGAGGTGAAAC...CAGAATACCTGCAGATTTCTGTGCATCGTGCTGTGAACCTCTGATGACCCTAAA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000028408.3 ENSMUST00000112122.9 |
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| CDS-3UTR CCA 90 bp | GGTCATCAGAGGTTCACAGCACGATGCACAGAAATCTGCAGGTATTCTGGGGAATTTCCCGGGAGAAACTaGGCAAAAATTGACAAAACT | + |
|
Preference number: 4 (lower is better) Translates to: GHQRFTARCTEICRYSGEFPGRN*AKIDKT Trigger: AGTTTTGTCAATTTTTGCCCAGTTTCTCCCGGGAAA...TTCCCCAGAATACCTGCAGATTTCTGTGCATCGTGCTGTGAACCTCTGATGACC 46% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 2 transcripts: ENSMUST00000028408.3 ENSMUST00000112122.9 |
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| CDS-3UTR TCA 90 bp | GGTCATCAGAGGTTCACAGCACGATGCACAGAAATCTGCAGGTATTCTGGGGAACTCATCAACTTTAGATaGATATTCAACACGGAACAG | + |
|
Preference number: 4 (lower is better) Translates to: GHQRFTARCTEICRYSGELINFR*IFNTEQ Trigger: CTGTTCCGTGTTGAATATTCATCTAAAGTTGATGAG...TTCCCCAGAATACCTGCAGATTTCTGTGCATCGTGCTGTGAACCTCTGATGACC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000028408.3 ENSMUST00000112122.9 |
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| CDS-3UTR CCA 90 bp | GGTCATCAGAGGTTCACAGCACGATGCACAGAAATCTGCAGGTATTCTGGGGAATGTGCAAAACCCAGGTaGAATGATTTGTCTGATTTT | + |
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Preference number: 4 (lower is better) Translates to: GHQRFTARCTEICRYSGECAKPR*NDLSDF Trigger: AAAATCAGACAAATCATTCCACCTGGGTTTTGCACA...TTCCCCAGAATACCTGCAGATTTCTGTGCATCGTGCTGTGAACCTCTGATGACC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000028408.3 ENSMUST00000112122.9 |
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| CDS-3UTR CCA 90 bp | ATCAGAGGTTCACAGCACGATGCACAGAAATCTGCAGGTATTCTGGGGAACAAGTGTGCAAAACCCAGGTaGAATGATTTGTCTGATTTT | + |
|
Preference number: 4 (lower is better) Translates to: IRGSQHDAQKSAGILGNKCAKPR*NDLSDF Trigger: AAAATCAGACAAATCATTCCACCTGGGTTTTGCACA...CTTGTTCCCCAGAATACCTGCAGATTTCTGTGCATCGTGCTGTGAACCTCTGAT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000028408.3 ENSMUST00000112122.9 |
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| CDS-3UTR GCA 90 bp | ACTAAGGAGAACATAGATAACTTTAGGGTCATCAGAGGTTCACAGCACGATGCAAATCTCTCTTCCAGCTaGTCATGCTGCACACTTATT | + |
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Preference number: 4 (lower is better) Translates to: TKENIDNFRVIRGSQHDANLSSS*SCCTLI Trigger: AATAAGTGTGCAGCATGAGCAGCTGGAAGAGAGATT...TGCATCGTGCTGTGAACCTCTGATGACCCTAAAGTTATCTATGTTCTCCTTAGT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000028408.3 ENSMUST00000112122.9 |
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| CDS-3UTR CCA 90 bp | ATTTTACTGTTTAAGAAGAAAGCAGTGGGCGGTGGTATTTCACAAGCCATCTTTGCCCTGACCTTGAAATaGAGTCAGTATCAGCATCTG | + |
|
Preference number: 4 (lower is better) Translates to: ILLFKKKAVGGGISQAIFALTLK*SQYQHL Trigger: CAGATGCTGATACTGACTCCATTTCAAGGTCAGGGC...AAAGATGGCTTGTGAAATACCACCGCCCACTGCTTTCTTCTTAAACAGTAAAAT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000028408.3 ENSMUST00000112122.9 |
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| CDS-3UTR CCA 90 bp | ACTAAGGAGAACATAGATAACTTTAGGGTCATCAGAGGTTCACAGCACGATGCAGGCATTTCTTCATCTTaGCAAGATCCCTCTGCTTTT | + |
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Preference number: 4 (lower is better) Translates to: TKENIDNFRVIRGSQHDAGISSS*QDPSAF Trigger: AAAAGCAGAGGGATCTTGCCAAGATGAAGAAATGCC...TGCATCGTGCTGTGAACCTCTGATGACCCTAAAGTTATCTATGTTCTCCTTAGT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000028408.3 ENSMUST00000112122.9 |
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| CDS-3UTR TCA 90 bp | TTAAGAAGAAAGCAGTGGGCGGTGGTATTTCACAAGCCATCTTTTATTAATGCATCATCCCCAAAGAGCTaGTGGGTATATTCAGGAAAG | + |
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Preference number: 4 (lower is better) Translates to: LRRKQWAVVFHKPSFINASSPKS*WVYSGK Trigger: CTTTCCTGAATATACCCATCAGCTCTTTGGGGATGA...TGCATTAATAAAAGATGGCTTGTGAAATACCACCGCCCACTGCTTTCTTCTTAA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000028408.3 ENSMUST00000112122.9 |
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| CDS-3UTR TCA 90 bp | CATTTATTTTACTGTTTAAGAAGAAAGCAGTGGGCGGTGGTATTTCACAAGCCAAACACGGAACAGTGTTaGCAGGCTACCAGCAATATA | + |
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Preference number: 4 (lower is better) Translates to: HLFYCLRRKQWAVVFHKPNTEQC*QATSNI Trigger: TATATTGCTGGTAGCCTGTCAACACTGTTCCGTGTT...TGGCTTGTGAAATACCACCGCCCACTGCTTTCTTCTTAAACAGTAAAATAAATG 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000028408.3 ENSMUST00000112122.9 |
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| CDS-3UTR TCA 90 bp | ATTTTACTGTTTAAGAAGAAAGCAGTGGGCGGTGGTATTTCACAAGCCATCTTTGTTTCACCTCCTGTCTaGCTAGGAACTGTGTATGTA | + |
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Preference number: 4 (lower is better) Translates to: ILLFKKKAVGGGISQAIFVSPPV*LGTVYV Trigger: TACATACACAGTTCCTAGTCAGACAGGAGGTGAAAC...AAAGATGGCTTGTGAAATACCACCGCCCACTGCTTTCTTCTTAAACAGTAAAAT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000028408.3 ENSMUST00000112122.9 |
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| CDS-3UTR GCA 90 bp | TTAAGAAGAAAGCAGTGGGCGGTGGTATTTCACAAGCCATCTTTTATTAATGCATCTTCACTGAATCCTTaGAGTAATCTTTCCCGGGAG | + |
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Preference number: 4 (lower is better) Translates to: LRRKQWAVVFHKPSFINASSLNP*SNLSRE Trigger: CTCCCGGGAAAGATTACTGCAAGGATTCAGTGAAGA...TGCATTAATAAAAGATGGCTTGTGAAATACCACCGCCCACTGCTTTCTTCTTAA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000028408.3 ENSMUST00000112122.9 |
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| CDS-3UTR GCA 90 bp | CATTTATTTTACTGTTTAAGAAGAAAGCAGTGGGCGGTGGTATTTCACAAGCCATCCAGCTGCTCATGCTaGACACTTATTTCTATCTGG | + |
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Preference number: 4 (lower is better) Translates to: HLFYCLRRKQWAVVFHKPSSCSC*TLISIW Trigger: CCAGATAGAAATAAGTGTGCAGCATGAGCAGCTGGA...TGGCTTGTGAAATACCACCGCCCACTGCTTTCTTCTTAAACAGTAAAATAAATG 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000028408.3 ENSMUST00000112122.9 |
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| CDS-3UTR CCA 90 bp | TTAAGAAGAAAGCAGTGGGCGGTGGTATTTCACAAGCCATCTTTTATTAATGCAGCTCGATTGCTGTGTTaGTGTTACACTTGTACTCTG | + |
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Preference number: 4 (lower is better) Translates to: LRRKQWAVVFHKPSFINAARLLC*CYTCTL Trigger: CAGAGTACAAGTGTAACACCAACACAGCAATCGAGC...TGCATTAATAAAAGATGGCTTGTGAAATACCACCGCCCACTGCTTTCTTCTTAA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000028408.3 ENSMUST00000112122.9 |
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| CDS-3UTR TCA 90 bp | ACTAAGGAGAACATAGATAACTTTAGGGTCATCAGAGGTTCACAGCACGATGCATTGCCATATCTTCACTaGATCCTTGCAGTAATCTTT | + |
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Preference number: 4 (lower is better) Translates to: TKENIDNFRVIRGSQHDALPYLH*ILAVIF Trigger: AAAGATTACTGCAAGGATTCAGTGAAGATATGGCAA...TGCATCGTGCTGTGAACCTCTGATGACCCTAAAGTTATCTATGTTCTCCTTAGT 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000028408.3 ENSMUST00000112122.9 |
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| CDS-3UTR TCA 90 bp | TTTTACTGTTTAAGAAGAAAGCAGTGGGCGGTGGTATTTCACAAGCCATCTTTTTCTATCTGGTTCATCTaGTTTGTCAGCTCTTCTGGT | + |
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Preference number: 4 (lower is better) Translates to: FYCLRRKQWAVVFHKPSFSIWFI*FVSSSG Trigger: ACCAGAAGAGCTGACAAATCAGATGAACCAGATAGA...AAAAGATGGCTTGTGAAATACCACCGCCCACTGCTTTCTTCTTAAACAGTAAAA 40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000028408.3 ENSMUST00000112122.9 |
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| CDS-3UTR GCA 90 bp | TTTTACTGTTTAAGAAGAAAGCAGTGGGCGGTGGTATTTCACAAGCCATCTTTTGCCTTCAACATCATCTaGCTCCACACAATCAAAGTT | + |
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Preference number: 4 (lower is better) Translates to: FYCLRRKQWAVVFHKPSFAFNII*LHTIKV Trigger: AACTTTGATTGTGTGGAGGCAGATGATGTTGAAGGC...AAAAGATGGCTTGTGAAATACCACCGCCCACTGCTTTCTTCTTAAACAGTAAAA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000028408.3 ENSMUST00000112122.9 |
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| CDS-3UTR GCA 90 bp | ATTTTACTGTTTAAGAAGAAAGCAGTGGGCGGTGGTATTTCACAAGCCATCTTTTCTTCCAGCTGCTCATaGTGCACACTTATTTCTATC | + |
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Preference number: 4 (lower is better) Translates to: ILLFKKKAVGGGISQAIFSSSCS*CTLISI Trigger: GATAGAAATAAGTGTGCAGCATGAGCAGCTGGAAGA...AAAGATGGCTTGTGAAATACCACCGCCCACTGCTTTCTTCTTAAACAGTAAAAT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000028408.3 ENSMUST00000112122.9 |
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| CDS-3UTR CCA 90 bp | TATTCCACTAAGGAGAACATAGATAACTTTAGGGTCATCAGAGGTTCACAGCACTGGCCGGGTTTTGTCTaGGTACACATAGTAATTATA | + |
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Preference number: 4 (lower is better) Translates to: YSTKENIDNFRVIRGSQHWPGFV*VHIVII Trigger: TATAATTACTATGTGTACCCAGACAAAACCCGGCCA...GTGCTGTGAACCTCTGATGACCCTAAAGTTATCTATGTTCTCCTTAGTGGAATA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000028408.3 ENSMUST00000112122.9 |
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| CDS-3UTR CCA 90 bp | TTTTACTGTTTAAGAAGAAAGCAGTGGGCGGTGGTATTTCACAAGCCATCTTTTTTTCCCGGGAGAAACTaGGCAAAAATTGACAAAACT | + |
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Preference number: 4 (lower is better) Translates to: FYCLRRKQWAVVFHKPSFFPGRN*AKIDKT Trigger: AGTTTTGTCAATTTTTGCCCAGTTTCTCCCGGGAAA...AAAAGATGGCTTGTGAAATACCACCGCCCACTGCTTTCTTCTTAAACAGTAAAA 39% GC, longest homopolymer 7 nt, total homopolymer stretches 20 nt. Matches the following 2 transcripts: ENSMUST00000028408.3 ENSMUST00000112122.9 |
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| CDS-3UTR CCA 90 bp | TTAAGAAGAAAGCAGTGGGCGGTGGTATTTCACAAGCCATCTTTTATTAATGCAATTTGTCAGCTCTTCTaGTCTCAGGCATTTCTTCAT | + |
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Preference number: 4 (lower is better) Translates to: LRRKQWAVVFHKPSFINAICQLF*SQAFLH Trigger: ATGAAGAAATGCCTGAGACCAGAAGAGCTGACAAAT...TGCATTAATAAAAGATGGCTTGTGAAATACCACCGCCCACTGCTTTCTTCTTAA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000028408.3 ENSMUST00000112122.9 |
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| CDS-3UTR CCA 90 bp | ATTTTACTGTTTAAGAAGAAAGCAGTGGGCGGTGGTATTTCACAAGCCATCTTTATTTGTCAGCTCTTCTaGTCTCAGGCATTTCTTCAT | + |
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Preference number: 4 (lower is better) Translates to: ILLFKKKAVGGGISQAIFICQLF*SQAFLH Trigger: ATGAAGAAATGCCTGAGACCAGAAGAGCTGACAAAT...AAAGATGGCTTGTGAAATACCACCGCCCACTGCTTTCTTCTTAAACAGTAAAAT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000028408.3 ENSMUST00000112122.9 |
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| CDS-3UTR CCA 90 bp | CATTTATTTTACTGTTTAAGAAGAAAGCAGTGGGCGGTGGTATTTCACAAGCCAGTTTCAAATAGCTTCTaGACGGATCTTCCGCTAAAA | + |
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Preference number: 4 (lower is better) Translates to: HLFYCLRRKQWAVVFHKPVSNSF*TDLPLK Trigger: TTTTAGCGGAAGATCCGTCCAGAAGCTATTTGAAAC...TGGCTTGTGAAATACCACCGCCCACTGCTTTCTTCTTAAACAGTAAAATAAATG 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000112122.9 |
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| CDS-3UTR TCA 90 bp | TTTTACTGTTTAAGAAGAAAGCAGTGGGCGGTGGTATTTCACAAGCCATCTTTTTTGCCATATCTTCACTaGATCCTTGCAGTAATCTTT | + |
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Preference number: 4 (lower is better) Translates to: FYCLRRKQWAVVFHKPSFLPYLH*ILAVIF Trigger: AAAGATTACTGCAAGGATTCAGTGAAGATATGGCAA...AAAAGATGGCTTGTGAAATACCACCGCCCACTGCTTTCTTCTTAAACAGTAAAA 38% GC, longest homopolymer 6 nt, total homopolymer stretches 10 nt. Matches the following 2 transcripts: ENSMUST00000028408.3 ENSMUST00000112122.9 |
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| CDS-3UTR CAA 90 bp | GGTCATCAGAGGTTCACAGCACGATGCACAGAAATCTGCAGGTATTCTGGGGAAAACTGTTTCAAGAAGTaGAGCACCGTGGCCCTGACC | + |
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Preference number: 5 (lower is better) Translates to: GHQRFTARCTEICRYSGENCFKK*STVALT Trigger: GGTCAGGGCCACGGTGCTCAACTTCTTGAAACAGTT...TTCCCCAGAATACCTGCAGATTTCTGTGCATCGTGCTGTGAACCTCTGATGACC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000028408.3 ENSMUST00000112122.9 |
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| CDS-3UTR CAA 90 bp | AGAGGTTCACAGCACGATGCACAGAAATCTGCAGGTATTCTGGGGAACAAGGGCCAACACGGAACAGTGTaGACAGGCTACCAGCAATAT | + |
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Preference number: 5 (lower is better) Translates to: RGSQHDAQKSAGILGNKGQHGTV*TGYQQY Trigger: ATATTGCTGGTAGCCTGTCAACACTGTTCCGTGTTG...GCCCTTGTTCCCCAGAATACCTGCAGATTTCTGTGCATCGTGCTGTGAACCTCT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000028408.3 ENSMUST00000112122.9 |
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| CDS CCA 90 bp | ATGAACTGTTTCAAGAAGTTGAGCACCGTGGCCCTGACCTTGAAATaGAGTCAGTATCAGCATCTGACTTACACGTGGCCGGGTTTTGTC | + |
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Preference number: 5 (lower is better) Translates to: MNCFKKLSTVALTLK*SQYQHLTYTWPGFV Trigger: GACAAAACCCGGCCACGTGTAAGTCAGATGCTGATACTGACTCCATTTCAAGGTCAGGGCCACGGTGCTCAACTTCTTGAAACAGTTCAT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000028408.3 ENSMUST00000112122.9 |
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| CDS-3UTR CAA 90 bp | AGAGGTTCACAGCACGATGCACAGAAATCTGCAGGTATTCTGGGGAACAAGGGCCATGTCATGTCAGCCTaGTGGATCTGGAAAGTAAAG | + |
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Preference number: 5 (lower is better) Translates to: RGSQHDAQKSAGILGNKGHVMSA*WIWKVK Trigger: CTTTACTTTCCAGATCCACAAGGCTGACATGACATG...GCCCTTGTTCCCCAGAATACCTGCAGATTTCTGTGCATCGTGCTGTGAACCTCT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000028408.3 ENSMUST00000112122.9 |
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| CDS CCA 90 bp | TGGAGTCAGTATCAGCATCTGACTTACACGTGGCCGGGTTTTGTCTaGGTACACATAGTAATTATAGACTGTCATGTAGCCTACGGTCGC | + |
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Preference number: 5 (lower is better) Translates to: WSQYQHLTYTWPGFV*VHIVIIDCHVAYGR Trigger: GCGACCGTAGGCTACATGACAGTCTATAATTACTATGTGTACCCAGACAAAACCCGGCCACGTGTAAGTCAGATGCTGATACTGACTCCA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000028408.3 ENSMUST00000112122.9 |
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| CDS-3UTR CAA 90 bp | GGTCATCAGAGGTTCACAGCACGATGCACAGAAATCTGCAGGTATTCTGGGGAAAGGCATTTCTTCATCTaGGCAAGATCCCTCTGCTTT | + |
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Preference number: 5 (lower is better) Translates to: GHQRFTARCTEICRYSGERHFFI*ARSLCF Trigger: AAAGCAGAGGGATCTTGCCAAGATGAAGAAATGCCT...TTCCCCAGAATACCTGCAGATTTCTGTGCATCGTGCTGTGAACCTCTGATGACC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000028408.3 ENSMUST00000112122.9 |
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| CDS-3UTR CAA 90 bp | ATCAGAGGTTCACAGCACGATGCACAGAAATCTGCAGGTATTCTGGGGAACAAGCCCAGGTGGAATGATTaGTCTGATTTTGCCTTCAAC | + |
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Preference number: 5 (lower is better) Translates to: IRGSQHDAQKSAGILGNKPRWND*SDFAFN Trigger: GTTGAAGGCAAAATCAGACAAATCATTCCACCTGGG...CTTGTTCCCCAGAATACCTGCAGATTTCTGTGCATCGTGCTGTGAACCTCTGAT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000028408.3 ENSMUST00000112122.9 |
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| CDS-3UTR CAA 90 bp | AGAGGTTCACAGCACGATGCACAGAAATCTGCAGGTATTCTGGGGAACAAGGGCAGGGTTCCAAAAGGCTaGAAATTAGTTTCCTTTTCC | + |
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Preference number: 5 (lower is better) Translates to: RGSQHDAQKSAGILGNKGRVPKG*KLVSFS Trigger: GGAAAAGGAAACTAATTTCAAGCCTTTTGGAACCCT...GCCCTTGTTCCCCAGAATACCTGCAGATTTCTGTGCATCGTGCTGTGAACCTCT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000028408.3 ENSMUST00000112122.9 |
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| CDS-3UTR CAA 90 bp | ACTAAGGAGAACATAGATAACTTTAGGGTCATCAGAGGTTCACAGCACGATGCAACCGTGGCCCTGACCTaGAAATGGAGTCAGTATCAG | + |
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Preference number: 5 (lower is better) Translates to: TKENIDNFRVIRGSQHDATVALT*KWSQYQ Trigger: CTGATACTGACTCCATTTCAAGGTCAGGGCCACGGT...TGCATCGTGCTGTGAACCTCTGATGACCCTAAAGTTATCTATGTTCTCCTTAGT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000028408.3 ENSMUST00000112122.9 |
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| CDS-3UTR CAA 90 bp | TTTAGGGTCATCAGAGGTTCACAGCACGATGCACAGAAATCTGCAGGTATTCTGTCTGTAGCTTCTGTATaGCTCAGCATCGCTCATGTC | + |
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Preference number: 5 (lower is better) Translates to: FRVIRGSQHDAQKSAGILSVASV*LSIAHV Trigger: GACATGAGCGATGCTGAGCAATACAGAAGCTACAGA...CAGAATACCTGCAGATTTCTGTGCATCGTGCTGTGAACCTCTGATGACCCTAAA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000028408.3 ENSMUST00000112122.9 |
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| CDS-3UTR CAA 90 bp | TTTAGGGTCATCAGAGGTTCACAGCACGATGCACAGAAATCTGCAGGTATTCTGCTAGTTTCAGCTCGATaGCTGTGTTGGTGTTACACT | + |
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Preference number: 5 (lower is better) Translates to: FRVIRGSQHDAQKSAGILLVSAR*LCWCYT Trigger: AGTGTAACACCAACACAGCAATCGAGCTGAAACTAG...CAGAATACCTGCAGATTTCTGTGCATCGTGCTGTGAACCTCTGATGACCCTAAA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000028408.3 ENSMUST00000112122.9 |
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| CDS-3UTR CAA 90 bp | ATTTTACTGTTTAAGAAGAAAGCAGTGGGCGGTGGTATTTCACAAGCCATCTTTACCGTGGCCCTGACCTaGAAATGGAGTCAGTATCAG | + |
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Preference number: 5 (lower is better) Translates to: ILLFKKKAVGGGISQAIFTVALT*KWSQYQ Trigger: CTGATACTGACTCCATTTCAAGGTCAGGGCCACGGT...AAAGATGGCTTGTGAAATACCACCGCCCACTGCTTTCTTCTTAAACAGTAAAAT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000028408.3 ENSMUST00000112122.9 |
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| CDS-3UTR CAA 90 bp | TTTTACTGTTTAAGAAGAAAGCAGTGGGCGGTGGTATTTCACAAGCCATCTTTTAACTGTTTCAAGAAGTaGAGCACCGTGGCCCTGACC | + |
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Preference number: 5 (lower is better) Translates to: FYCLRRKQWAVVFHKPSFNCFKK*STVALT Trigger: GGTCAGGGCCACGGTGCTCAACTTCTTGAAACAGTT...AAAAGATGGCTTGTGAAATACCACCGCCCACTGCTTTCTTCTTAAACAGTAAAA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000028408.3 ENSMUST00000112122.9 |
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| CDS-3UTR CAA 90 bp | ATCAGAGGTTCACAGCACGATGCACAGAAATCTGCAGGTATTCTGGGGAACAAGGAAACTGGGCAAAAATaGACAAAACTTCACAAGCAC | + |
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Preference number: 5 (lower is better) Translates to: IRGSQHDAQKSAGILGNKETGQK*TKLHKH Trigger: GTGCTTGTGAAGTTTTGTCAATTTTTGCCCAGTTTC...CTTGTTCCCCAGAATACCTGCAGATTTCTGTGCATCGTGCTGTGAACCTCTGAT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 2 transcripts: ENSMUST00000028408.3 ENSMUST00000112122.9 |
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| CDS-3UTR CAA 90 bp | TTTAGGGTCATCAGAGGTTCACAGCACGATGCACAGAAATCTGCAGGTATTCTGAGGGTTCCAAAAGGCTaGAAATTAGTTTCCTTTTCC | + |
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Preference number: 5 (lower is better) Translates to: FRVIRGSQHDAQKSAGILRVPKG*KLVSFS Trigger: GGAAAAGGAAACTAATTTCAAGCCTTTTGGAACCCT...CAGAATACCTGCAGATTTCTGTGCATCGTGCTGTGAACCTCTGATGACCCTAAA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000028408.3 ENSMUST00000112122.9 |
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| CDS-3UTR CAA 90 bp | TATTCCACTAAGGAGAACATAGATAACTTTAGGGTCATCAGAGGTTCACAGCACTCTGTAGCTTCTGTATaGCTCAGCATCGCTCATGTC | + |
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Preference number: 5 (lower is better) Translates to: YSTKENIDNFRVIRGSQHSVASV*LSIAHV Trigger: GACATGAGCGATGCTGAGCAATACAGAAGCTACAGA...GTGCTGTGAACCTCTGATGACCCTAAAGTTATCTATGTTCTCCTTAGTGGAATA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000028408.3 ENSMUST00000112122.9 |
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| CDS-3UTR CAA 90 bp | ACTAAGGAGAACATAGATAACTTTAGGGTCATCAGAGGTTCACAGCACGATGCAAGGCATTTCTTCATCTaGGCAAGATCCCTCTGCTTT | + |
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Preference number: 5 (lower is better) Translates to: TKENIDNFRVIRGSQHDARHFFI*ARSLCF Trigger: AAAGCAGAGGGATCTTGCCAAGATGAAGAAATGCCT...TGCATCGTGCTGTGAACCTCTGATGACCCTAAAGTTATCTATGTTCTCCTTAGT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000028408.3 ENSMUST00000112122.9 |
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| CDS-3UTR CAA 90 bp | ATTTTACTGTTTAAGAAGAAAGCAGTGGGCGGTGGTATTTCACAAGCCATCTTTCAACACGGAACAGTGTaGACAGGCTACCAGCAATAT | + |
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Preference number: 5 (lower is better) Translates to: ILLFKKKAVGGGISQAIFQHGTV*TGYQQY Trigger: ATATTGCTGGTAGCCTGTCAACACTGTTCCGTGTTG...AAAGATGGCTTGTGAAATACCACCGCCCACTGCTTTCTTCTTAAACAGTAAAAT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000028408.3 ENSMUST00000112122.9 |
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| CDS-3UTR CAA 90 bp | TTAAGAAGAAAGCAGTGGGCGGTGGTATTTCACAAGCCATCTTTTATTAATGCACTAGTTTCAGCTCGATaGCTGTGTTGGTGTTACACT | + |
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Preference number: 5 (lower is better) Translates to: LRRKQWAVVFHKPSFINALVSAR*LCWCYT Trigger: AGTGTAACACCAACACAGCAATCGAGCTGAAACTAG...TGCATTAATAAAAGATGGCTTGTGAAATACCACCGCCCACTGCTTTCTTCTTAA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000028408.3 ENSMUST00000112122.9 |
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| CDS-3UTR CAA 90 bp | TTAAGAAGAAAGCAGTGGGCGGTGGTATTTCACAAGCCATCTTTTATTAATGCACATGTCATGTCAGCCTaGTGGATCTGGAAAGTAAAG | + |
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Preference number: 5 (lower is better) Translates to: LRRKQWAVVFHKPSFINAHVMSA*WIWKVK Trigger: CTTTACTTTCCAGATCCACAAGGCTGACATGACATG...TGCATTAATAAAAGATGGCTTGTGAAATACCACCGCCCACTGCTTTCTTCTTAA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000028408.3 ENSMUST00000112122.9 |
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| CDS-3UTR CAA 90 bp | ACTAAGGAGAACATAGATAACTTTAGGGTCATCAGAGGTTCACAGCACGATGCAGAAACTGGGCAAAAATaGACAAAACTTCACAAGCAC | + |
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Preference number: 5 (lower is better) Translates to: TKENIDNFRVIRGSQHDAETGQK*TKLHKH Trigger: GTGCTTGTGAAGTTTTGTCAATTTTTGCCCAGTTTC...TGCATCGTGCTGTGAACCTCTGATGACCCTAAAGTTATCTATGTTCTCCTTAGT 41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000028408.3 ENSMUST00000112122.9 |
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| CDS-3UTR CAA 90 bp | TTAAGAAGAAAGCAGTGGGCGGTGGTATTTCACAAGCCATCTTTTATTAATGCAGTGTTGGTGTTACACTaGTACTCTGCTAGTTTCTTC | + |
|
Preference number: 5 (lower is better) Translates to: LRRKQWAVVFHKPSFINAVLVLH*YSASFF Trigger: GAAGAAACTAGCAGAGTACAAGTGTAACACCAACAC...TGCATTAATAAAAGATGGCTTGTGAAATACCACCGCCCACTGCTTTCTTCTTAA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000028408.3 ENSMUST00000112122.9 |
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| CDS-3UTR CAA 90 bp | ATTTTACTGTTTAAGAAGAAAGCAGTGGGCGGTGGTATTTCACAAGCCATCTTTATGATTTGTCTGATTTaGCCTTCAACATCATCTGCC | + |
|
Preference number: 5 (lower is better) Translates to: ILLFKKKAVGGGISQAIFMICLI*PSTSSA Trigger: GGCAGATGATGTTGAAGGCAAAATCAGACAAATCAT...AAAGATGGCTTGTGAAATACCACCGCCCACTGCTTTCTTCTTAAACAGTAAAAT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000028408.3 ENSMUST00000112122.9 |
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| CDS-3UTR CAA 90 bp | TTTTACTGTTTAAGAAGAAAGCAGTGGGCGGTGGTATTTCACAAGCCATCTTTTATGATTTGTCTGATTTaGCCTTCAACATCATCTGCC | + |
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Preference number: 5 (lower is better) Translates to: FYCLRRKQWAVVFHKPSFMICLI*PSTSSA Trigger: GGCAGATGATGTTGAAGGCAAAATCAGACAAATCAT...AAAAGATGGCTTGTGAAATACCACCGCCCACTGCTTTCTTCTTAAACAGTAAAA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000028408.3 ENSMUST00000112122.9 |
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| CDS CCA 72 bp | TTCAAGAAGTTGAGCACCGTGGCCCTGACCTTGAAATaGAGTCAGTATCAGCATCTGACTTACACGTGGCCG | + |
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Preference number: 6 (lower is better) Translates to: FKKLSTVALTLK*SQYQHLTYTWP Trigger: CGGCCACGTGTAAGTCAGATGCTGATACTGACTCCATTTCAAGGTCAGGGCCACGGTGCTCAACTTCTTGAA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000028408.3 ENSMUST00000112122.9 |
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| CDS CAA 90 bp | GTATCTATGAACTGTTTCAAGAAGTTGAGCACCGTGGCCCTGACCTaGAAATGGAGTCAGTATCAGCATCTGACTTACACGTGGCCGGGT | + |
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Preference number: 6 (lower is better) Translates to: VSMNCFKKLSTVALT*KWSQYQHLTYTWPG Trigger: ACCCGGCCACGTGTAAGTCAGATGCTGATACTGACTCCATTTCAAGGTCAGGGCCACGGTGCTCAACTTCTTGAAACAGTTCATAGATAC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000028408.3 ENSMUST00000112122.9 |
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| CDS CAA 72 bp | AACTGTTTCAAGAAGTTGAGCACCGTGGCCCTGACCTaGAAATGGAGTCAGTATCAGCATCTGACTTACACG | + |
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Preference number: 6 (lower is better) Translates to: NCFKKLSTVALT*KWSQYQHLTYT Trigger: CGTGTAAGTCAGATGCTGATACTGACTCCATTTCAAGGTCAGGGCCACGGTGCTCAACTTCTTGAAACAGTT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000028408.3 ENSMUST00000112122.9 |
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| CDS CAA 90 bp | GGAAAACGAACTAGTTTCAGCTCGATTGCTGTGTTGGTGTTACACTaGTACTCTGCTAGTTTCTTCTCCACGGCACTCTTATACTCCACC | + |
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Preference number: 6 (lower is better) Translates to: GKRTSFSSIAVLVLH*YSASFFSTALLYST Trigger: GGTGGAGTATAAGAGTGCCGTGGAGAAGAAACTAGCAGAGTACAAGTGTAACACCAACACAGCAATCGAGCTGAAACTAGTTCGTTTTCC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000028408.3 ENSMUST00000112122.9 |
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| CDS CAA 90 bp | CCAGCTGCTCATGCTGCACACTTATTTCTATCTGGTTCATCTGATTaGTCAGCTCTTCTGGTCTCAGGCATTTCTTCATCTTGGCAAGAT | + |
|
Preference number: 6 (lower is better) Translates to: PAAHAAHLFLSGSSD*SALLVSGISSSWQD Trigger: ATCTTGCCAAGATGAAGAAATGCCTGAGACCAGAAGAGCTGACAAATCAGATGAACCAGATAGAAATAAGTGTGCAGCATGAGCAGCTGG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000028408.3 ENSMUST00000112122.9 |
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| CDS CCA 72 bp | TATCAGCATCTGACTTACACGTGGCCGGGTTTTGTCTaGGTACACATAGTAATTATAGACTGTCATGTAGCC | + |
|
Preference number: 6 (lower is better) Translates to: YQHLTYTWPGFV*VHIVIIDCHVA Trigger: GGCTACATGACAGTCTATAATTACTATGTGTACCCAGACAAAACCCGGCCACGTGTAAGTCAGATGCTGATA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000028408.3 ENSMUST00000112122.9 |
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| CDS CAA 72 bp | ACTAGTTTCAGCTCGATTGCTGTGTTGGTGTTACACTaGTACTCTGCTAGTTTCTTCTCCACGGCACTCTTA | + |
|
Preference number: 6 (lower is better) Translates to: TSFSSIAVLVLH*YSASFFSTALL Trigger: TAAGAGTGCCGTGGAGAAGAAACTAGCAGAGTACAAGTGTAACACCAACACAGCAATCGAGCTGAAACTAGT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000028408.3 ENSMUST00000112122.9 |
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| CDS CCA 72 bp | CAGGAAAACGAACTAGTTTCAGCTCGATTGCTGTGTTaGTGTTACACTTGTACTCTGCTAGTTTCTTCTCCA | + |
|
Preference number: 6 (lower is better) Translates to: QENELVSARLLC*CYTCTLLVSSP Trigger: TGGAGAAGAAACTAGCAGAGTACAAGTGTAACACCAACACAGCAATCGAGCTGAAACTAGTTCGTTTTCCTG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000028408.3 ENSMUST00000112122.9 |
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| CDS CAA 72 bp | TCAGGAAAACGAACTAGTTTCAGCTCGATTGCTGTGTaGGTGTTACACTTGTACTCTGCTAGTTTCTTCTCC | + |
|
Preference number: 6 (lower is better) Translates to: SGKRTSFSSIAV*VLHLYSASFFS Trigger: GGAGAAGAAACTAGCAGAGTACAAGTGTAACACCAACACAGCAATCGAGCTGAAACTAGTTCGTTTTCCTGA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000028408.3 ENSMUST00000112122.9 |
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| CDS CAA 72 bp | ATCATTTGTGTTTGTGCAAAACCCAGGTGGAATGATTaGTCTGATTTTGCCTTCAACATCATCTGCCTCCAC | + |
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Preference number: 6 (lower is better) Translates to: IICVCAKPRWND*SDFAFNIICLH Trigger: GTGGAGGCAGATGATGTTGAAGGCAAAATCAGACAAATCATTCCACCTGGGTTTTGCACAAACACAAATGAT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000028408.3 ENSMUST00000112122.9 |
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