Pregenerated sensors for HAPLN2 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000004894Ensembl transcript IDs: ENSMUST00000005014.9, ENSMUST00000160150.2
Found 50 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | CCTTCGTGCTGTGGGTGCTCTCTAATCACAAACCCAGTATATTGCTaGGCCATAGATGCAATATATGTTTGTTCTTATGGAACAAAGAAG | + |
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Preference number: 1 (lower is better) Translates to: PSCCGCSLITNPVYC*AIDAIYVCSYGTKK Trigger: CTTCTTTGTTCCATAAGAACAAACATATATTGCATCTATGGCTCAGCAATATACTGGGTTTGTGATTAGAGAGCACCCACAGCACGAAGG 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000005014.9 |
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| 3UTR CAA 90 bp | ATGAGCTCGCAGCGGTACCGACCCTCATCCTCCAGACGCACGTTCTaGATGATCAGGGAGGCGTCCAGCCGATGCCCTCTCCGCAAGCTG | + |
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Preference number: 2 (lower is better) Translates to: MSSQRYRPSSSRRTF*MIREASSRCPLRKL Trigger: CAGCTTGCGGAGAGGGCATCGGCTGGACGCCTCCCTGATCATCAAGAACGTGCGTCTGGAGGATGAGGGTCGGTACCGCTGCGAGCTCAT 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000160150.2 |
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| 3UTR-3UTR CCA 90 bp | CTTCGCTTCGAAGTAATTGAACTGGTAGCGGCCTCGGCTGGGTTGGTACGGAAAGCCCTCTCCGCAAGCTaGCGCGCCCTCCCAGGAGCC | + |
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Preference number: 2 (lower is better) Translates to: LRFEVIELVAASAGLVRKALSAS*RALPGA Trigger: GGCTCCTGGGAGGGCGCGCCAGCTTGCGGAGAGGGC...TTTCCGTACCAACCCAGCCGAGGCCGCTACCAGTTCAATTACTTCGAAGCGAAG 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000160150.2 |
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| 3UTR CAA 90 bp | CCGCTTCGCTTCGAAGTAATTGAACTGGTAGCGGCCTCGGCTGGGTaGGTACGGAAACACCACACCCTCCAGGCGCAGGGTCAGTGCCAC | + |
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Preference number: 2 (lower is better) Translates to: PLRFEVIELVAASAG*VRKHHTLQAQGQCH Trigger: GTGGCACTGACCCTGCGCCTGGAGGGTGTGGTGTTTCCGTACCAACCCAGCCGAGGCCGCTACCAGTTCAATTACTTCGAAGCGAAGCGG 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000160150.2 |
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| 3UTR-3UTR CCA 90 bp | GCCATAGATGCAATATATGTTTGTTCTTATGGAACAAAGAAGGTGCCATGTTATCCCGAAGCACCGCGCTaGCCTGGGGAAGGCAGAAGT | + |
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Preference number: 2 (lower is better) Translates to: AIDAIYVCSYGTKKVPCYPEAPR*PGEGRS Trigger: ACTTCTGCCTTCCCCAGGCCAGCGCGGTGCTTCGGG...ATAACATGGCACCTTCTTTGTTCCATAAGAACAAACATATATTGCATCTATGGC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000005014.9 |
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| 3UTR-3UTR GCA 90 bp | TTGAATATTTGTTTTGTAGGGCCCAGACAGCTCTGGAAGTTTGGAGTTCCTGGAATGGAACAAAGAAGGTaGCATGTTATTTTATTGGTC | + |
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Preference number: 2 (lower is better) Translates to: LNICFVGPRQLWKFGVPGMEQRR*HVILLV Trigger: GACCAATAAAATAACATGGCACCTTCTTTGTTCCAT...TCCAGGAACTCCAAACTTCCAGAGCTGTCTGGGCCCTACAAAACAAATATTCAA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000005014.9 |
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| 3UTR CCA 72 bp | TCAGGGAGGCGTCCAGCCGATGCCCTCTCCGCAAGCTaGCGCGCCCTCCCAGGAGCCCGTAGTCCCGGGCGT | + |
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Preference number: 3 (lower is better) Translates to: SGRRPADALSAS*RALPGARSPGR Trigger: ACGCCCGGGACTACGGGCTCCTGGGAGGGCGCGCCAGCTTGCGGAGAGGGCATCGGCTGGACGCCTCCCTGA 74% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000160150.2 |
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| 3UTR CCA 72 bp | GGACGCCCCTTTGCCCAGCAGCCCGAAGCACCGCGCTaGCCTGGGGAAGGCAGAAGTGAGGGCTGGGCCTTA | + |
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Preference number: 3 (lower is better) Translates to: GRPFAQQPEAPR*PGEGRSEGWAL Trigger: TAAGGCCCAGCCCTCACTTCTGCCTTCCCCAGGCCAGCGCGGTGCTTCGGGCTGCTGGGCAAAGGGGCGTCC 69% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000005014.9 |
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| 3UTR GCA 72 bp | CGCACGTTCTTGATGATCAGGGAGGCGTCCAGCCGATaGCCTCTCCGCAAGCTGGCGCGCCCTCCCAGGAGC | + |
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Preference number: 3 (lower is better) Translates to: RTFLMIREASSR*PLRKLARPPRS Trigger: GCTCCTGGGAGGGCGCGCCAGCTTGCGGAGAGGGCATCGGCTGGACGCCTCCCTGATCATCAAGAACGTGCG 68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000160150.2 |
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| 3UTR GCA 72 bp | GTACGGAAACACCACACCCTCCAGGCGCAGGGTCAGTaGCACGCTCTCGTCCTCAATGCCATTGATGAGCTC | + |
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Preference number: 3 (lower is better) Translates to: VRKHHTLQAQGQ*HALVLNAIDEL Trigger: GAGCTCATCAATGGCATTGAGGACGAGAGCGTGGCACTGACCCTGCGCCTGGAGGGTGTGGTGTTTCCGTAC 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000160150.2 |
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| 3UTR TCA 72 bp | CCTGCTCTTCACACGCCCGCTTCGCTTCGAAGTAATTaGACTGGTAGCGGCCTCGGCTGGGTTGGTACGGAA | + |
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Preference number: 3 (lower is better) Translates to: PALHTPASLRSN*TGSGLGWVGTE Trigger: TTCCGTACCAACCCAGCCGAGGCCGCTACCAGTTCAATTACTTCGAAGCGAAGCGGGCGTGTGAAGAGCAGG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000160150.2 |
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| 3UTR CCA 72 bp | TTCTTATGGAACAAAGAAGGTGCCATGTTATTTTATTaGTCAGTTAATGCCCGGGACGCCCCTTTGCCCAGC | + |
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Preference number: 3 (lower is better) Translates to: FLWNKEGAMLFY*SVNARDAPLPS Trigger: GCTGGGCAAAGGGGCGTCCCGGGCATTAACTGACCAATAAAATAACATGGCACCTTCTTTGTTCCATAAGAA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000005014.9 |
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| 3UTR CCA 72 bp | TTCCTGGAAATTTTGAATAAGAAACCTTTGAGTGACTaGTTAGACATAAAGGGCAGCCTGTATTCTCCCGTG | + |
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Preference number: 3 (lower is better) Translates to: FLEILNKKPLSD*LDIKGSLYSPV Trigger: CACGGGAGAATACAGGCTGCCCTTTATGTCTAACCAGTCACTCAAAGGTTTCTTATTCAAAATTTCCAGGAA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000005014.9 |
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| 3UTR TCA 72 bp | TGTGGGTGCTCTCTAATCACAAACCCAGTATATTGCTaGGCCATAGATGCAATATATGTTTGTTCTTATGGA | + |
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Preference number: 3 (lower is better) Translates to: CGCSLITNPVYC*AIDAIYVCSYG Trigger: TCCATAAGAACAAACATATATTGCATCTATGGCTCAGCAATATACTGGGTTTGTGATTAGAGAGCACCCACA 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000005014.9 |
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| CDS-3UTR TCA 90 bp | TGGTCAGTTAATGCCCGGGACGCCCCTTTGCCCAGCAGCCCGAAGCACCGCGCTGCGGCCGCGGCGTCGTaGTGGGGAAGCGAACGCTGC | + |
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Preference number: 4 (lower is better) Translates to: WSVNARDAPLPSSPKHRAAAAAS*WGSERC Trigger: GCAGCGTTCGCTTCCCCATCACGACGCCGCGGCCGC...AGCGCGGTGCTTCGGGCTGCTGGGCAAAGGGGCGTCCCGGGCATTAACTGACCA 70% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000005014.9 |
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| 3UTR CAA 72 bp | CAGCGGTACCGACCCTCATCCTCCAGACGCACGTTCTaGATGATCAGGGAGGCGTCCAGCCGATGCCCTCTC | + |
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Preference number: 4 (lower is better) Translates to: QRYRPSSSRRTF*MIREASSRCPL Trigger: GAGAGGGCATCGGCTGGACGCCTCCCTGATCATCAAGAACGTGCGTCTGGAGGATGAGGGTCGGTACCGCTG 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000160150.2 |
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| CDS-3UTR GCA 90 bp | CTCCTCTGTCCTTCGTGCTGTGGGTGCTCTCTAATCACAAACCCAGTATATTGCCATAGCGGTCGCGGCTaGGGTCGCGGGGCCCGTAGC | + |
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Preference number: 4 (lower is better) Translates to: LLCPSCCGCSLITNPVYCHSGRG*GRGARS Trigger: GCTACGGGCCCCGCGACCGCAGCCGCGACCGCTATG...GCAATATACTGGGTTTGTGATTAGAGAGCACCCACAGCACGAAGGACAGAGGAG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000005014.9 |
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| CDS-3UTR TCA 90 bp | GCGGTACCGACCCTCATCCTCCAGACGCACGTTCTTGATGATCAGGGAGGCGTCCTTTGTGAAAGCTGGTaGAGGCCCAGGGGAGAAGGA | + |
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Preference number: 4 (lower is better) Translates to: AVPTLILQTHVLDDQGGVLCESW*RPRGEG Trigger: TCCTTCTCCCCTGGGCCTTCACCAGCTTTCACAAAG...GACGCCTCCCTGATCATCAAGAACGTGCGTCTGGAGGATGAGGGTCGGTACCGC 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000160150.2 |
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| CDS-3UTR CCA 90 bp | GAATATTTGTTTTGTAGGGCCCAGACAGCTCTGGAAGTTTGGAGTTCCTGGAAAGCCCTCTCCGCAAGCTaGCGCGCCCTCCCAGGAGCC | + |
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Preference number: 4 (lower is better) Translates to: EYLFCRAQTALEVWSSWKALSAS*RALPGA Trigger: GGCTCCTGGGAGGGCGCGCCAGCTTGCGGAGAGGGC...TTTCCAGGAACTCCAAACTTCCAGAGCTGTCTGGGCCCTACAAAACAAATATTC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000005014.9 |
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| CDS-3UTR CCA 90 bp | CCTCTCCTCTGTCCTTCGTGCTGTGGGTGCTCTCTAATCACAAACCCAGTATATCTCCGGCAAGCCGCGTaGGCTTCTGACAGCGTCAGC | + |
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Preference number: 4 (lower is better) Translates to: PLLCPSCCGCSLITNPVYLRQAA*ASDSVS Trigger: GCTGACGCTGTCAGAAGCCCACGCGGCTTGCCGGAG...ATATACTGGGTTTGTGATTAGAGAGCACCCACAGCACGAAGGACAGAGGAGAGG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000005014.9 |
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| CDS-3UTR GCA 90 bp | GTGCCATGTTATTTTATTGGTCAGTTAATGCCCGGGACGCCCCTTTGCCCAGCAGAAGAACACCTGGCCTaGCAGGGCCGAGGTGAAGCA | + |
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Preference number: 4 (lower is better) Translates to: VPCYFIGQLMPGTPLCPAEEHLA*QGRGEA Trigger: TGCTTCACCTCGGCCCTGGCAGGCCAGGTGTTCTTC...TGCTGGGCAAAGGGGCGTCCCGGGCATTAACTGACCAATAAAATAACATGGCAC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000005014.9 |
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| CDS-3UTR CCA 90 bp | TCTCCTCTGTCCTTCGTGCTGTGGGTGCTCTCTAATCACAAACCCAGTATATTGAGAGGTGCCCGACCTTaGCTACTACGGCTCCGCGCC | + |
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Preference number: 4 (lower is better) Translates to: SPLSFVLWVLSNHKPSILRGARP*LLRLRA Trigger: GGCGCGGAGCCGTAGTAGCCAAGGTCGGGCACCTCT...CAATATACTGGGTTTGTGATTAGAGAGCACCCACAGCACGAAGGACAGAGGAGA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000005014.9 |
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| CDS-3UTR TCA 90 bp | TCTTATGGAACAAAGAAGGTGCCATGTTATTTTATTGGTCAGTTAATGCCCGGGAGCCGCGTGGGCTTCTaGCAGCGTCAGCCGCCCCGG | + |
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Preference number: 4 (lower is better) Translates to: SYGTKKVPCYFIGQLMPGSRVGF*QRQPPR Trigger: CCGGGGCGGCTGACGCTGTCAGAAGCCCACGCGGCT...CCCGGGCATTAACTGACCAATAAAATAACATGGCACCTTCTTTGTTCCATAAGA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000005014.9 |
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| CDS-3UTR GCA 90 bp | TTGAATATTTGTTTTGTAGGGCCCAGACAGCTCTGGAAGTTTGGAGTTCCTGGAGGGGGAAGCCGAAGCTaGGCACCCCTGGGTCAGGGA | + |
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Preference number: 4 (lower is better) Translates to: LNICFVGPRQLWKFGVPGGGSRS*APLGQG Trigger: TCCCTGACCCAGGGGTGCGCAGCTTCGGCTTCCCCC...TCCAGGAACTCCAAACTTCCAGAGCTGTCTGGGCCCTACAAAACAAATATTCAA 54% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000005014.9 |
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| CDS-3UTR CCA 90 bp | TCTTATGGAACAAAGAAGGTGCCATGTTATTTTATTGGTCAGTTAATGCCCGGGGGACGCAGGGCAGTGTaGCCGTGGCCCCACGACGAG | + |
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Preference number: 4 (lower is better) Translates to: SYGTKKVPCYFIGQLMPGGRRAV*PWPHDE Trigger: CTCGTCGTGGGGCCACGGCCACACTGCCCTGCGTCC...CCCGGGCATTAACTGACCAATAAAATAACATGGCACCTTCTTTGTTCCATAAGA 53% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000005014.9 |
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| CDS-3UTR TCA 90 bp | AAGGTGCCATGTTATTTTATTGGTCAGTTAATGCCCGGGACGCCCCTTTGCCCACTTTGTGAAAGCTGGTaGAGGCCCAGGGGAGAAGGA | + |
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Preference number: 4 (lower is better) Translates to: KVPCYFIGQLMPGTPLCPLCESW*RPRGEG Trigger: TCCTTCTCCCCTGGGCCTTCACCAGCTTTCACAAAG...TGGGCAAAGGGGCGTCCCGGGCATTAACTGACCAATAAAATAACATGGCACCTT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000005014.9 |
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| CDS-3UTR TCA 90 bp | GAATATTTGTTTTGTAGGGCCCAGACAGCTCTGGAAGTTTGGAGTTCCTGGAAAGCCCCACGACGAGAGTaGATGACCTCGTGGATGGGG | + |
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Preference number: 4 (lower is better) Translates to: EYLFCRAQTALEVWSSWKAPRRE*MTSWMG Trigger: CCCCATCCACGAGGTCATTCACTCTCGTCGTGGGGC...TTTCCAGGAACTCCAAACTTCCAGAGCTGTCTGGGCCCTACAAAACAAATATTC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000005014.9 |
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| CDS-3UTR CCA 90 bp | AGTTTGGAGTTCCTGGAAATTTTGAATAAGAAACCTTTGAGTGACTGGTTAGACGTAGCTGCGGATGCCTaGCCGCCCGTGGCCGCCGCA | + |
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Preference number: 4 (lower is better) Translates to: SLEFLEILNKKPLSDWLDVAADA*PPVAAA Trigger: TGCGGCGGCCACGGGCGGCCAGGCATCCGCAGCTAC...GTCTAACCAGTCACTCAAAGGTTTCTTATTCAAAATTTCCAGGAACTCCAAACT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000005014.9 |
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| CDS-3UTR TCA 90 bp | AGTTTGAATATTTGTTTTGTAGGGCCCAGACAGCTCTGGAAGTTTGGAGTTCCTCTGCCAGGGCCGAGGTaGAGCAGAAGGCGTCATAGC | + |
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Preference number: 4 (lower is better) Translates to: SLNICFVGPRQLWKFGVPLPGPR*SRRRHS Trigger: GCTATGACGCCTTCTGCTTCACCTCGGCCCTGGCAG...AGGAACTCCAAACTTCCAGAGCTGTCTGGGCCCTACAAAACAAATATTCAAACT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000005014.9 |
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| CDS-3UTR GCA 90 bp | GAAATTTTGAATAAGAAACCTTTGAGTGACTGGTTAGACATAAAGGGCAGCCTGGCAACCAGCCGGCGTTaGACCAGTCCAGCCCCTCGG | + |
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Preference number: 4 (lower is better) Translates to: EILNKKPLSDWLDIKGSLATSRR*TSPAPR Trigger: CCGAGGGGCTGGACTGGTGCAACGCCGGCTGGTTGC...CAGGCTGCCCTTTATGTCTAACCAGTCACTCAAAGGTTTCTTATTCAAAATTTC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000005014.9 |
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| CDS-3UTR CCA 90 bp | AGTTTGAATATTTGTTTTGTAGGGCCCAGACAGCTCTGGAAGTTTGGAGTTCCTCGGCCTCGGCTGGGTTaGTACGGAAACACCACACCC | + |
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Preference number: 4 (lower is better) Translates to: SLNICFVGPRQLWKFGVPRPRLG*YGNTTP Trigger: GGGTGTGGTGTTTCCGTACCAACCCAGCCGAGGCCG...AGGAACTCCAAACTTCCAGAGCTGTCTGGGCCCTACAAAACAAATATTCAAACT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000005014.9 |
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| CDS-3UTR GCA 90 bp | CTGAGCCATAGATGCAATATATGTTTGTTCTTATGGAACAAAGAAGGTGCCATGGCCAGGCGTCCGTCCTaGTCTTCACACGCCCGCTTC | + |
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Preference number: 4 (lower is better) Translates to: LSHRCNICLFLWNKEGAMARRPS*SSHARF Trigger: GAAGCGGGCGTGTGAAGAGCAGGACGGACGCCTGGC...CATGGCACCTTCTTTGTTCCATAAGAACAAACATATATTGCATCTATGGCTCAG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000005014.9 |
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| CDS-3UTR CCA 90 bp | AGTTTGGAGTTCCTGGAAATTTTGAATAAGAAACCTTTGAGTGACTGGTTAGACAGCGTACTTTGTAGCTaGGAGGCGAGGTGCCCAGGA | + |
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Preference number: 4 (lower is better) Translates to: SLEFLEILNKKPLSDWLDSVLCS*EARCPG Trigger: TCCTGGGCACCTCGCCTCCCAGCTACAAAGTACGCT...GTCTAACCAGTCACTCAAAGGTTTCTTATTCAAAATTTCCAGGAACTCCAAACT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000005014.9 |
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| CDS-3UTR CCA 90 bp | GCCATAGATGCAATATATGTTTGTTCTTATGGAACAAAGAAGGTGCCATGTTATGGTAGCGGCCTCGGCTaGGTTGGTACGGAAACACCA | + |
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Preference number: 4 (lower is better) Translates to: AIDAIYVCSYGTKKVPCYGSGLG*VGTETP Trigger: TGGTGTTTCCGTACCAACCCAGCCGAGGCCGCTACC...ATAACATGGCACCTTCTTTGTTCCATAAGAACAAACATATATTGCATCTATGGC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000005014.9 |
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| 3UTR CAA 72 bp | AGTTTGGAGTTCCTGGAAATTTTGAATAAGAAACCTTaGAGTGACTGGTTAGACATAAAGGGCAGCCTGTAT | + |
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Preference number: 4 (lower is better) Translates to: SLEFLEILNKKP*SDWLDIKGSLY Trigger: ATACAGGCTGCCCTTTATGTCTAACCAGTCACTCAAAGGTTTCTTATTCAAAATTTCCAGGAACTCCAAACT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000005014.9 |
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| 3UTR CAA 72 bp | CCCAGTATATTGCTGAGCCATAGATGCAATATATGTTaGTTCTTATGGAACAAAGAAGGTGCCATGTTATTT | + |
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Preference number: 4 (lower is better) Translates to: PSILLSHRCNIC*FLWNKEGAMLF Trigger: AAATAACATGGCACCTTCTTTGTTCCATAAGAACAAACATATATTGCATCTATGGCTCAGCAATATACTGGG 36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000005014.9 |
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| CDS GCA 90 bp | AGAAGGCGTCATAGCGGTCGCGGCTGCGGTCGCGGGGCCCGTAGCTaGGGATGCCTGGCCGCCCGTGGCCGCCGCACGGAGCCCGCGCGG | + |
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Preference number: 5 (lower is better) Translates to: RRRHSGRGCGRGARS*GCLAARGRRTEPAR Trigger: CCGCGCGGGCTCCGTGCGGCGGCCACGGGCGGCCAGGCATCCGCAGCTACGGGCCCCGCGACCGCAGCCGCGACCGCTATGACGCCTTCT 79% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000005014.9 |
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| CDS CCA 90 bp | ATAGCGGTCGCGGCTGCGGTCGCGGGGCCCGTAGCTGCGGATGCCTaGCCGCCCGTGGCCGCCGCACGGAGCCCGCGCGGTGAGCACAGG | + |
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Preference number: 5 (lower is better) Translates to: IAVAAAVAGPVAADA*PPVAAARSPRGEHR Trigger: CCTGTGCTCACCGCGCGGGCTCCGTGCGGCGGCCACGGGCGGCCAGGCATCCGCAGCTACGGGCCCCGCGACCGCAGCCGCGACCGCTAT 79% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000005014.9 |
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| CDS TCA 90 bp | CTTGGCTACTACGGCTCCGCGCCTCCGGCAAGCCGCGTGGGCTTCTaGCAGCGTCAGCCGCCCCGGCACGAAGAACACCTGGCCTGCCAG | + |
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Preference number: 5 (lower is better) Translates to: LGYYGSAPPASRVGF*QRQPPRHEEHLACQ Trigger: CTGGCAGGCCAGGTGTTCTTCGTGCCGGGGCGGCTGACGCTGTCAGAAGCCCACGCGGCTTGCCGGAGGCGCGGAGCCGTAGTAGCCAAG 70% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000005014.9 |
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| CDS CCA 90 bp | TGCCCGACCTTGGCTACTACGGCTCCGCGCCTCCGGCAAGCCGCGTaGGCTTCTGACAGCGTCAGCCGCCCCGGCACGAAGAACACCTGG | + |
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Preference number: 5 (lower is better) Translates to: CPTLATTAPRLRQAA*ASDSVSRPGTKNTW Trigger: CCAGGTGTTCTTCGTGCCGGGGCGGCTGACGCTGTCAGAAGCCCACGCGGCTTGCCGGAGGCGCGGAGCCGTAGTAGCCAAGGTCGGGCA 70% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000005014.9 |
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| CDS CCA 90 bp | CCCGCAGCTCACCGGGCTCCACTTTGCTCCAGCGTACTTTGTAGCTaGGAGGCGAGGTGCCCAGGACGCAGGGCAGTGTGGCCGTGGCCC | + |
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Preference number: 5 (lower is better) Translates to: PAAHRAPLCSSVLCS*EARCPGRRAVWPWP Trigger: GGGCCACGGCCACACTGCCCTGCGTCCTGGGCACCTCGCCTCCCAGCTACAAAGTACGCTGGAGCAAAGTGGAGCCCGGTGAGCTGCGGG 69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000005014.9 |
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| CDS-3UTR CAA 90 bp | CCCGGGACGCCCCTTTGCCCAGCAGCCCGAAGCACCGCGCTGGCCTGGGGAAGGTCCAGACGCACGTTCTaGATGATCAGGGAGGCGTCC | + |
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Preference number: 5 (lower is better) Translates to: PGTPLCPAARSTALAWGRSRRTF*MIREAS Trigger: GGACGCCTCCCTGATCATCAAGAACGTGCGTCTGGA...CCTTCCCCAGGCCAGCGCGGTGCTTCGGGCTGCTGGGCAAAGGGGCGTCCCGGG 69% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000005014.9 |
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| CDS TCA 90 bp | CACTTTGCTCCAGCGTACTTTGTAGCCGGATTCCCCAGGGCTTTGTaGAAGCTGGTGAAGGCCCAGGGGAGAAGGAAGCAGCAGAACGCA | + |
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Preference number: 5 (lower is better) Translates to: HFAPAYFVAGFPRAL*KLVKAQGRRKQQNA Trigger: TGCGTTCTGCTGCTTCCTTCTCCCCTGGGCCTTCACCAGCTTTCACAAAGCCCTGGGGAATCCGGCTACAAAGTACGCTGGAGCAAAGTG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000160150.2 |
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| CDS-3UTR CAA 90 bp | AGTTTGGAGTTCCTGGAAATTTTGAATAAGAAACCTTTGAGTGACTGGTTAGACGCGGCCTCGGCTGGGTaGGTACGGAAACACCACACC | + |
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Preference number: 5 (lower is better) Translates to: SLEFLEILNKKPLSDWLDAASAG*VRKHHT Trigger: GGTGTGGTGTTTCCGTACCAACCCAGCCGAGGCCGC...GTCTAACCAGTCACTCAAAGGTTTCTTATTCAAAATTTCCAGGAACTCCAAACT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000005014.9 |
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| CDS-3UTR CAA 90 bp | AGTTTGGAGTTCCTGGAAATTTTGAATAAGAAACCTTTGAGTGACTGGTTAGACCGGGCGTGCAGTCCGTaGGTAATGAGGATTAGCGTT | + |
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Preference number: 5 (lower is better) Translates to: SLEFLEILNKKPLSDWLDRACSP*VMRISV Trigger: AACGCTAATCCTCATTACCAACGGACTGCACGCCCG...GTCTAACCAGTCACTCAAAGGTTTCTTATTCAAAATTTCCAGGAACTCCAAACT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000005014.9 |
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| CDS GCA 72 bp | CATAGCGGTCGCGGCTGCGGTCGCGGGGCCCGTAGCTaGGGATGCCTGGCCGCCCGTGGCCGCCGCACGGAG | + |
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Preference number: 6 (lower is better) Translates to: HSGRGCGRGARS*GCLAARGRRTE Trigger: CTCCGTGCGGCGGCCACGGGCGGCCAGGCATCCGCAGCTACGGGCCCCGCGACCGCAGCCGCGACCGCTATG 79% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000005014.9 |
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| CDS TCA 72 bp | TACGGCTCCGCGCCTCCGGCAAGCCGCGTGGGCTTCTaGCAGCGTCAGCCGCCCCGGCACGAAGAACACCTG | + |
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Preference number: 6 (lower is better) Translates to: YGSAPPASRVGF*QRQPPRHEEHL Trigger: CAGGTGTTCTTCGTGCCGGGGCGGCTGACGCTGTCAGAAGCCCACGCGGCTTGCCGGAGGCGCGGAGCCGTA 71% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000005014.9 |
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| CDS CCA 72 bp | TTGGCTACTACGGCTCCGCGCCTCCGGCAAGCCGCGTaGGCTTCTGACAGCGTCAGCCGCCCCGGCACGAAG | + |
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Preference number: 6 (lower is better) Translates to: LATTAPRLRQAA*ASDSVSRPGTK Trigger: CTTCGTGCCGGGGCGGCTGACGCTGTCAGAAGCCCACGCGGCTTGCCGGAGGCGCGGAGCCGTAGTAGCCAA 71% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000005014.9 |
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| CDS CAA 72 bp | GCACCAGTCCAGCCCCTCGGTCCACGCCTGGTAGAGTaGGCCGTAAGTGGCCAGGCGTCCGTCCTGCTCTTC | + |
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Preference number: 6 (lower is better) Translates to: APVQPLGPRLVE*AVSGQASVLLF Trigger: GAAGAGCAGGACGGACGCCTGGCCACTTACGGCCAACTCTACCAGGCGTGGACCGAGGGGCTGGACTGGTGC 67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000005014.9 |
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| CDS CCA 72 bp | CACCGGGCTCCACTTTGCTCCAGCGTACTTTGTAGCTaGGAGGCGAGGTGCCCAGGACGCAGGGCAGTGTGG | + |
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Preference number: 6 (lower is better) Translates to: HRAPLCSSVLCS*EARCPGRRAVW Trigger: CCACACTGCCCTGCGTCCTGGGCACCTCGCCTCCCAGCTACAAAGTACGCTGGAGCAAAGTGGAGCCCGGTG 65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000005014.9 |
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