Pregenerated sensors for HAPLN1 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000021613Ensembl transcript IDs: ENSMUST00000022108.9
Found 83 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | CCCAGCAGTGTTCATTCTAGGATGTTGTCAAGAATGGACAAATGGTaGACAATTGGTATAGACATATGTCAGCTAACAGTCACTTTGGAG | + |
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Preference number: 1 (lower is better) Translates to: PSSVHSRMLSRMDKW*TIGIDICQLTVTLE Trigger: CTCCAAAGTGACTGTTAGCTGACATATGTCTATACCAATTGTGCACCATTTGTCCATTCTTGACAACATCCTAGAATGAACACTGCTGGG 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022108.9 |
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| 3UTR CCA 90 bp | CTGCCCAGCAGTGTTCATTCTAGGATGTTGTCAAGAATGGACAAATaGTGCACAATTGGTATAGACATATGTCAGCTAACAGTCACTTTG | + |
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Preference number: 1 (lower is better) Translates to: LPSSVHSRMLSRMDK*CTIGIDICQLTVTL Trigger: CAAAGTGACTGTTAGCTGACATATGTCTATACCAATTGTGCACCATTTGTCCATTCTTGACAACATCCTAGAATGAACACTGCTGGGCAG 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022108.9 |
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| 3UTR CCA 90 bp | GACACCAGCATGCTTTTAGGAGTACTGAAATCAAGAAATCCAGTATaGCTGCCAGCAACCAAATTGGTATCTTATTTGAGTCTACTAATT | + |
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Preference number: 1 (lower is better) Translates to: DTSMLLGVLKSRNPV*LPATKLVSYLSLLI Trigger: AATTAGTAGACTCAAATAAGATACCAATTTGGTTGCTGGCAGCCATACTGGATTTCTTGATTTCAGTACTCCTAAAAGCATGCTGGTGTC 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000022108.9 |
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| 3UTR TCA 90 bp | ATTGCAGACAAAATTCTTACAATATACGTAATGATTGTTCAAGTATaGTCTTCCTCCAAAGAGATTAGCCTAGCCTGTAAGGTGTTTGAG | + |
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Preference number: 1 (lower is better) Translates to: IADKILTIYVMIVQV*SSSKEISLACKVFE Trigger: CTCAAACACCTTACAGGCTAGGCTAATCTCTTTGGAGGAAGATCATACTTGAACAATCATTACGTATATTGTAAGAATTTTGTCTGCAAT 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000022108.9 |
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| 3UTR CCA 90 bp | GGTCTTATTTGGGCACTGTATTGTGGATACAAACAAGAACAACTTTaGAAGTTGAGTCTTTATTTCTTAGGCAAGTGTAGAGTTATTCAT | + |
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Preference number: 1 (lower is better) Translates to: GLIWALYCGYKQEQL*KLSLYFLGKCRVIH Trigger: ATGAATAACTCTACACTTGCCTAAGAAATAAAGACTCAACTTCCAAAGTTGTTCTTGTTTGTATCCACAATACAGTGCCCAAATAAGACC 36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022108.9 |
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| 3UTR CCA 90 bp | TATACTAAGTATTCAAAAGTTAAGAAATGCTACTGCACTGTAATGTaGAGTTCTATGACAATAACTGGATGGAGTGCACCTAATTCGGTA | + |
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Preference number: 1 (lower is better) Translates to: YTKYSKVKKCYCTVM*SSMTITGWSAPNSV Trigger: TACCGAATTAGGTGCACTCCATCCAGTTATTGTCATAGAACTCCACATTACAGTGCAGTAGCATTTCTTAACTTTTGAATACTTAGTATA 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000022108.9 |
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| 3UTR-3UTR TCA 90 bp | CTTACTGATGTCTGTATTATTCATAGCTTTTGCTGTACACTGTGCTGGCAGTCTTGGTCAGCTACTCCATaGCACCAGCATGCTTTTAGG | + |
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Preference number: 2 (lower is better) Translates to: LTDVCIIHSFCCTLCWQSWSATP*HQHAFR Trigger: CCTAAAAGCATGCTGGTGTCATGGAGTAGCTGACCA...AGACTGCCAGCACAGTGTACAGCAAAAGCTATGAATAATACAGACATCAGTAAG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000022108.9 |
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| 3UTR-3UTR GCA 90 bp | CTGCCCAGCAGTGTTCATTCTAGGATGTTGTCAAGAATGGACAAATGGTGCACAATGATAGTGAGTTTTTaGACCTCCCAGAATCCTGGT | + |
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Preference number: 2 (lower is better) Translates to: LPSSVHSRMLSRMDKWCTMIVSF*TSQNPG Trigger: ACCAGGATTCTGGGAGGTGCAAAAACTCACTATCAT...TGTGCACCATTTGTCCATTCTTGACAACATCCTAGAATGAACACTGCTGGGCAG 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000022108.9 |
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| 3UTR-3UTR CCA 90 bp | CTGCCCAGCAGTGTTCATTCTAGGATGTTGTCAAGAATGGACAAATGGTGCACAAAATATTGGTCCCTCTaGGGTCTCTGCAATCATAAC | + |
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Preference number: 2 (lower is better) Translates to: LPSSVHSRMLSRMDKWCTKYWSL*GLCNHN Trigger: GTTATGATTGCAGAGACCCCAGAGGGACCAATATTT...TGTGCACCATTTGTCCATTCTTGACAACATCCTAGAATGAACACTGCTGGGCAG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000022108.9 |
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| 3UTR-3UTR GCA 90 bp | CTGCCCAGCAGTGTTCATTCTAGGATGTTGTCAAGAATGGACAAATGGTGCACATTACAGAGCTTTAAATaGAACCATGGTCAATTCAGG | + |
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Preference number: 2 (lower is better) Translates to: LPSSVHSRMLSRMDKWCTLQSFK*NHGQFR Trigger: CCTGAATTGACCATGGTTGCATTTAAAGCTCTGTAA...TGTGCACCATTTGTCCATTCTTGACAACATCCTAGAATGAACACTGCTGGGCAG 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022108.9 |
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| 3UTR-3UTR GCA 90 bp | CTGCCCAGCAGTGTTCATTCTAGGATGTTGTCAAGAATGGACAAATGGTGCACATCAAAAGTTAAGAAATaGTACTGCACTGTAATGTGG | + |
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Preference number: 2 (lower is better) Translates to: LPSSVHSRMLSRMDKWCTSKVKK*YCTVMW Trigger: CCACATTACAGTGCAGTAGCATTTCTTAACTTTTGA...TGTGCACCATTTGTCCATTCTTGACAACATCCTAGAATGAACACTGCTGGGCAG 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000022108.9 |
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| 3UTR-3UTR CCA 90 bp | CTGCCCAGCAGTGTTCATTCTAGGATGTTGTCAAGAATGGACAAATGGTGCACAATAGTTATGGTTTCATaGACTTCCATCTGCTCTATA | + |
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Preference number: 2 (lower is better) Translates to: LPSSVHSRMLSRMDKWCTIVMVS*TSICSI Trigger: TATAGAGCAGATGGAAGTCCATGAAACCATAACTAT...TGTGCACCATTTGTCCATTCTTGACAACATCCTAGAATGAACACTGCTGGGCAG 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022108.9 |
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| 3UTR-3UTR TCA 90 bp | TCCAGTATGGCTGCCAGCAACCAAATTGGTATCTTATTTGAGTCTACTAATTGCAACATATCCCATTCATaGAATGGCATCTTGTTGGGA | + |
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Preference number: 2 (lower is better) Translates to: SSMAASNQIGILFESTNCNISHS*NGILLG Trigger: TCCCAACAAGATGCCATTTCATGAATGGGATATGTT...GCAATTAGTAGACTCAAATAAGATACCAATTTGGTTGCTGGCAGCCATACTGGA 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022108.9 |
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| 3UTR-3UTR TCA 90 bp | TCCAGTATGGCTGCCAGCAACCAAATTGGTATCTTATTTGAGTCTACTAATTGCCTCGAAAGGGATTTCTaGATTAGACAGTGTTATGTC | + |
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Preference number: 2 (lower is better) Translates to: SSMAASNQIGILFESTNCLERDF*IRQCYV Trigger: GACATAACACTGTCTAATTCAGAAATCCCTTTCGAG...GCAATTAGTAGACTCAAATAAGATACCAATTTGGTTGCTGGCAGCCATACTGGA 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022108.9 |
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| 3UTR-3UTR CCA 90 bp | CTTACTGATGTCTGTATTATTCATAGCTTTTGCTGTACACTGTGCTGGCAGTCTATCCCATTCATGAAATaGCATCTTGTTGGGATGATG | + |
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Preference number: 2 (lower is better) Translates to: LTDVCIIHSFCCTLCWQSIPFMK*HLVGMM Trigger: CATCATCCCAACAAGATGCCATTTCATGAATGGGAT...AGACTGCCAGCACAGTGTACAGCAAAAGCTATGAATAATACAGACATCAGTAAG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000022108.9 |
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| 3UTR CAA 90 bp | TCAAGAAATCCAGTATGGCTGCCAGCAACCAAATTGGTATCTTATTaGAGTCTACTAATTGCCAAAATAACAAGCGACCATCTTACTGCA | + |
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Preference number: 2 (lower is better) Translates to: SRNPVWLPATKLVSY*SLLIAKITSDHLTA Trigger: TGCAGTAAGATGGTCGCTTGTTATTTTGGCAATTAGTAGACTCAAATAAGATACCAATTTGGTTGCTGGCAGCCATACTGGATTTCTTGA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000022108.9 |
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| 3UTR CAA 90 bp | GGAGTACTGAAATCAAGAAATCCAGTATGGCTGCCAGCAACCAAATaGGTATCTTATTTGAGTCTACTAATTGCCAAAATAACAAGCGAC | + |
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Preference number: 2 (lower is better) Translates to: GVLKSRNPVWLPATK*VSYLSLLIAKITSD Trigger: GTCGCTTGTTATTTTGGCAATTAGTAGACTCAAATAAGATACCAATTTGGTTGCTGGCAGCCATACTGGATTTCTTGATTTCAGTACTCC 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000022108.9 |
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| 3UTR-3UTR TCA 90 bp | CTACTCCATGACACCAGCATGCTTTTAGGAGTACTGAAATCAAGAAATCCAGTACACAAGAATTCACTGTaGAATAATGGGAAACCAGAA | + |
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Preference number: 2 (lower is better) Translates to: LLHDTSMLLGVLKSRNPVHKNSL*NNGKPE Trigger: TTCTGGTTTCCCATTATTTCACAGTGAATTCTTGTG...TACTGGATTTCTTGATTTCAGTACTCCTAAAAGCATGCTGGTGTCATGGAGTAG 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000022108.9 |
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| 3UTR CAA 90 bp | GGGGGAAATCTACATAAAAACATTGATGACAGCATACTAGCCATGTaGTACTTGGATTATTATGCTAAGGCCTACTCACAAGAATTCACT | + |
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Preference number: 2 (lower is better) Translates to: GGNLHKNIDDSILAM*YLDYYAKAYSQEFT Trigger: AGTGAATTCTTGTGAGTAGGCCTTAGCATAATAATCCAAGTACAACATGGCTAGTATGCTGTCATCAATGTTTTTATGTAGATTTCCCCC 38% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000022108.9 |
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| 3UTR-3UTR TCA 90 bp | TTGGGCACTGTATTGTGGATACAAACAAGAACAACTTTGGAAGTTGAGTCTTTATTACTACAATCCTGGTaGTTCTCAGCCTACAACATA | + |
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Preference number: 2 (lower is better) Translates to: LGTVLWIQTRTTLEVESLLLQSW*FSAYNI Trigger: TATGTTGTAGGCTGAGAATCACCAGGATTGTAGTAA...TAAAGACTCAACTTCCAAAGTTGTTCTTGTTTGTATCCACAATACAGTGCCCAA 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022108.9 |
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| 3UTR-3UTR CCA 90 bp | CTACTCCATGACACCAGCATGCTTTTAGGAGTACTGAAATCAAGAAATCCAGTATACTGCACTGTAATGTaGAGTTCTATGACAATAACT | + |
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Preference number: 2 (lower is better) Translates to: LLHDTSMLLGVLKSRNPVYCTVM*SSMTIT Trigger: AGTTATTGTCATAGAACTCCACATTACAGTGCAGTA...TACTGGATTTCTTGATTTCAGTACTCCTAAAAGCATGCTGGTGTCATGGAGTAG 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000022108.9 |
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| 3UTR CAA 90 bp | GGGGTCTCTGCAATCATAACAAGAAACTTTAATTTAAGACTGGAGTaGCTAATACTGAAAGTCACTTTTCTGAACCTGGGCTTAACTTTT | + |
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Preference number: 2 (lower is better) Translates to: GVSAIITRNFNLRLE*LILKVTFLNLGLTF Trigger: AAAAGTTAAGCCCAGGTTCAGAAAAGTGACTTTCAGTATTAGCAACTCCAGTCTTAAATTAAAGTTTCTTGTTATGATTGCAGAGACCCC 37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000022108.9 |
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| 3UTR CAA 90 bp | CTCACAAGAATTCACTGTGAAATAATGGGAAACCAGAAATATTACTaGAATATAAATATTGGTCCCTCTGGGGTCTCTGCAATCATAACA | + |
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Preference number: 2 (lower is better) Translates to: LTRIHCEIMGNQKYY*NINIGPSGVSAIIT Trigger: TGTTATGATTGCAGAGACCCCAGAGGGACCAATATTTATATTCAAGTAATATTTCTGGTTTCCCATTATTTCACAGTGAATTCTTGTGAG 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000022108.9 |
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| 3UTR-3UTR TCA 90 bp | TATTCATTCAAAGCATTGCTAGCAACAGAAGAATGCATGGTGTATTTGTCAAGTTCACTTTGGAGATTTTaGTCAGCACCATTTCCTATA | + |
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Preference number: 2 (lower is better) Translates to: YSFKALLATEECMVYLSSSLWRF*SAPFPI Trigger: TATAGGAAATGGTGCTGATCAAAATCTCCAAAGTGA...ACTTGACAAATACACCATGCATTCTTCTGTTGCTAGCAATGCTTTGAATGAATA 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000022108.9 |
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| 3UTR-3UTR CAA 90 bp | TCCAGTATGGCTGCCAGCAACCAAATTGGTATCTTATTTGAGTCTACTAATTGCTTACAACAGCACTGTTaGAGTGAAACCCCACATTTT | + |
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Preference number: 3 (lower is better) Translates to: SSMAASNQIGILFESTNCLQQHC*SETPHF Trigger: AAAATGTGGGGTTTCACTCAAACAGTGCTGTTGTAA...GCAATTAGTAGACTCAAATAAGATACCAATTTGGTTGCTGGCAGCCATACTGGA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000022108.9 |
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| 3UTR-3UTR CAA 90 bp | TCCAGTATGGCTGCCAGCAACCAAATTGGTATCTTATTTGAGTCTACTAATTGCGTCACTTTGGAGATTTaGATCAGCACCATTTCCTAT | + |
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Preference number: 3 (lower is better) Translates to: SSMAASNQIGILFESTNCVTLEI*ISTISY Trigger: ATAGGAAATGGTGCTGATCAAAATCTCCAAAGTGAC...GCAATTAGTAGACTCAAATAAGATACCAATTTGGTTGCTGGCAGCCATACTGGA 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022108.9 |
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| 3UTR GCA 72 bp | AAAAGTCTCTGTTGTTCCCTTATGATAGTGAGTTTTTaGACCTCCCAGAATCCTGGTTTATGTAAAGAAGCC | + |
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Preference number: 3 (lower is better) Translates to: KSLCCSLMIVSF*TSQNPGLCKEA Trigger: GGCTTCTTTACATAAACCAGGATTCTGGGAGGTGCAAAAACTCACTATCATAAGGGAACAACAGAGACTTTT 40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000022108.9 |
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| 3UTR-3UTR CAA 90 bp | CTTACTGATGTCTGTATTATTCATAGCTTTTGCTGTACACTGTGCTGGCAGTCTGAACAACTTTGGAAGTaGAGTCTTTATTTCTTAGGC | + |
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Preference number: 3 (lower is better) Translates to: LTDVCIIHSFCCTLCWQSEQLWK*SLYFLG Trigger: GCCTAAGAAATAAAGACTCAACTTCCAAAGTTGTTC...AGACTGCCAGCACAGTGTACAGCAAAAGCTATGAATAATACAGACATCAGTAAG 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000022108.9 |
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| 3UTR-3UTR CAA 90 bp | TCCAGTATGGCTGCCAGCAACCAAATTGGTATCTTATTTGAGTCTACTAATTGCTATTTGGGCACTGTATaGTGGATACAAACAAGAACA | + |
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Preference number: 3 (lower is better) Translates to: SSMAASNQIGILFESTNCYLGTV*WIQTRT Trigger: TGTTCTTGTTTGTATCCACAATACAGTGCCCAAATA...GCAATTAGTAGACTCAAATAAGATACCAATTTGGTTGCTGGCAGCCATACTGGA 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022108.9 |
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| 3UTR-3UTR CAA 90 bp | TATTCATTCAAAGCATTGCTAGCAACAGAAGAATGCATGGTGTATTTGTCAAGTCAGCTAACAGTCACTTaGGAGATTTTGATCAGCACC | + |
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Preference number: 3 (lower is better) Translates to: YSFKALLATEECMVYLSSQLTVT*EILIST Trigger: GGTGCTGATCAAAATCTCCAAAGTGACTGTTAGCTG...ACTTGACAAATACACCATGCATTCTTCTGTTGCTAGCAATGCTTTGAATGAATA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000022108.9 |
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| 3UTR CCA 72 bp | TATTCAAAAGTTAAGAAATGCTACTGCACTGTAATGTaGAGTTCTATGACAATAACTGGATGGAGTGCACCT | + |
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Preference number: 3 (lower is better) Translates to: YSKVKKCYCTVM*SSMTITGWSAP Trigger: AGGTGCACTCCATCCAGTTATTGTCATAGAACTCCACATTACAGTGCAGTAGCATTTCTTAACTTTTGAATA 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000022108.9 |
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| 3UTR CCA 72 bp | ATGCTTTTAGGAGTACTGAAATCAAGAAATCCAGTATaGCTGCCAGCAACCAAATTGGTATCTTATTTGAGT | + |
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Preference number: 3 (lower is better) Translates to: MLLGVLKSRNPV*LPATKLVSYLS Trigger: ACTCAAATAAGATACCAATTTGGTTGCTGGCAGCCATACTGGATTTCTTGATTTCAGTACTCCTAAAAGCAT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000022108.9 |
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| 3UTR-3UTR CAA 90 bp | TTACTTGAATATAAATATTGGTCCCTCTGGGGTCTCTGCAATCATAACAAGAAAAGGGTTATCACAGTTTaGGTAACTTGCATGAGTTCA | + |
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Preference number: 3 (lower is better) Translates to: LLEYKYWSLWGLCNHNKKRVITV*VTCMSS Trigger: TGAACTCATGCAAGTTACCAAAACTGTGATAACCCT...TTTCTTGTTATGATTGCAGAGACCCCAGAGGGACCAATATTTATATTCAAGTAA 37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000022108.9 |
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| 3UTR TCA 72 bp | CTTAGAAGTCTGAATTCAATTTACAACAGCACTGTTTaGGTGAAACCCCACATTTTCTTTGGATGTATACTT | + |
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Preference number: 3 (lower is better) Translates to: LRSLNSIYNSTV*VKPHIFFGCIL Trigger: AAGTATACATCCAAAGAAAATGTGGGGTTTCACTCAAACAGTGCTGTTGTAAATTGAATTCAGACTTCTAAG 35% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000022108.9 |
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| CDS-3UTR GCA 90 bp | CTGCCCAGCAGTGTTCATTCTAGGATGTTGTCAAGAATGGACAAATGGTGCACACAGCCTCAGTCGGACTaGAGCGCCTTCTTGGTCGAG | + |
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Preference number: 4 (lower is better) Translates to: LPSSVHSRMLSRMDKWCTQPQSD*SAFLVE Trigger: CTCGACCAAGAAGGCGCTGCAGTCCGACTGAGGCTG...TGTGCACCATTTGTCCATTCTTGACAACATCCTAGAATGAACACTGCTGGGCAG 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022108.9 |
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| CDS-3UTR TCA 90 bp | CTGCCCAGCAGTGTTCATTCTAGGATGTTGTCAAGAATGGACAAATGGTGCACACCGCCTCATCGTAGGTaGGTTTGGTGGGGTGGATCA | + |
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Preference number: 4 (lower is better) Translates to: LPSSVHSRMLSRMDKWCTPPHRR*VWWGGS Trigger: TGATCCACCCCACCAAACTCACCTACGATGAGGCGG...TGTGCACCATTTGTCCATTCTTGACAACATCCTAGAATGAACACTGCTGGGCAG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000022108.9 |
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| CDS-3UTR TCA 90 bp | CTACTCCATGACACCAGCATGCTTTTAGGAGTACTGAAATCAAGAAATCCAGTAGCACAGATCCATCACTaGGCCAGCCAGCATTGCACC | + |
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Preference number: 4 (lower is better) Translates to: LLHDTSMLLGVLKSRNPVAQIHH*ASQHCT Trigger: GGTGCAATGCTGGCTGGCTCAGTGATGGATCTGTGC...TACTGGATTTCTTGATTTCAGTACTCCTAAAAGCATGCTGGTGTCATGGAGTAG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000022108.9 |
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| CDS-3UTR TCA 90 bp | CTGCCCAGCAGTGTTCATTCTAGGATGTTGTCAAGAATGGACAAATGGTGCACAAAAACCCGTAGTTCCTaGCTCCAGGCACCGTGTTTT | + |
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Preference number: 4 (lower is better) Translates to: LPSSVHSRMLSRMDKWCTKTRSS*LQAPCF Trigger: AAAACACGGTGCCTGGAGTCAGGAACTACGGGTTTT...TGTGCACCATTTGTCCATTCTTGACAACATCCTAGAATGAACACTGCTGGGCAG 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000022108.9 |
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| CDS-3UTR CCA 90 bp | TCCAGTATGGCTGCCAGCAACCAAATTGGTATCTTATTTGAGTCTACTAATTGCGCAATCACTGCGTCCTaGTCCAGACAAGCCTGGCGT | + |
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Preference number: 4 (lower is better) Translates to: SSMAASNQIGILFESTNCAITAS*SRQAWR Trigger: ACGCCAGGCTTGTCTGGACCAGGACGCAGTGATTGC...GCAATTAGTAGACTCAAATAAGATACCAATTTGGTTGCTGGCAGCCATACTGGA 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022108.9 |
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| CDS-3UTR GCA 90 bp | TCCAGTATGGCTGCCAGCAACCAAATTGGTATCTTATTTGAGTCTACTAATTGCATGGCAGTGTCACGTTaGCACCTCGGTGAGAGAAGA | + |
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Preference number: 4 (lower is better) Translates to: SSMAASNQIGILFESTNCMAVSR*HLGERR Trigger: TCTTCTCTCACCGAGGTGGCAACGTGACACTGCCAT...GCAATTAGTAGACTCAAATAAGATACCAATTTGGTTGCTGGCAGCCATACTGGA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022108.9 |
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| CDS-3UTR TCA 90 bp | TTGGGCACTGTATTGTGGATACAAACAAGAACAACTTTGGAAGTTGAGTCTTTATCTGAGCACCGTCATTaGGACAAGCTTGCACCGCCT | + |
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Preference number: 4 (lower is better) Translates to: LGTVLWIQTRTTLEVESLSEHRH*DKLAPP Trigger: AGGCGGTGCAAGCTTGTCTCAATGACGGTGCTCAGA...TAAAGACTCAACTTCCAAAGTTGTTCTTGTTTGTATCCACAATACAGTGCCCAA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022108.9 |
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| CDS-3UTR GCA 90 bp | TCCAGTATGGCTGCCAGCAACCAAATTGGTATCTTATTTGAGTCTACTAATTGCAAAGGAAGCAATCACTaGGTCCTGGTCCAGACAAGC | + |
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Preference number: 4 (lower is better) Translates to: SSMAASNQIGILFESTNCKGSNH*VLVQTS Trigger: GCTTGTCTGGACCAGGACGCAGTGATTGCTTCCTTT...GCAATTAGTAGACTCAAATAAGATACCAATTTGGTTGCTGGCAGCCATACTGGA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022108.9 |
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| CDS-3UTR TCA 90 bp | TATTCATTCAAAGCATTGCTAGCAACAGAAGAATGCATGGTGTATTTGTCAAGTACGTTGCCACCTCGGTaGGAGAAGACCTTGGCTTGT | + |
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Preference number: 4 (lower is better) Translates to: YSFKALLATEECMVYLSSTLPPR*EKTLAC Trigger: ACAAGCCAAGGTCTTCTCTCACCGAGGTGGCAACGT...ACTTGACAAATACACCATGCATTCTTCTGTTGCTAGCAATGCTTTGAATGAATA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022108.9 |
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| CDS-3UTR CCA 90 bp | TCCAGTATGGCTGCCAGCAACCAAATTGGTATCTTATTTGAGTCTACTAATTGCGGTGAGAGAAGACCTTaGCTTGTTCTGCTTCCACAA | + |
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Preference number: 4 (lower is better) Translates to: SSMAASNQIGILFESTNCGERRP*LVLLPQ Trigger: TTGTGGAAGCAGAACAAGCCAAGGTCTTCTCTCACC...GCAATTAGTAGACTCAAATAAGATACCAATTTGGTTGCTGGCAGCCATACTGGA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022108.9 |
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| CDS-3UTR TCA 90 bp | TTACTTGAATATAAATATTGGTCCCTCTGGGGTCTCTGCAATCATAACAAGAAAGTCAGCCCAACAGACTaGAATCAGCACCAGGAGAAG | + |
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Preference number: 4 (lower is better) Translates to: LLEYKYWSLWGLCNHNKKVSPTD*NQHQEK Trigger: CTTCTCCTGGTGCTGATTTCAGTCTGTTGGGCTGAC...TTTCTTGTTATGATTGCAGAGACCCCAGAGGGACCAATATTTATATTCAAGTAA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000022108.9 |
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| CDS-3UTR TCA 90 bp | CTACTCCATGACACCAGCATGCTTTTAGGAGTACTGAAATCAAGAAATCCAGTATTAGCTTGGTCCACTTaGTGCGGATTTTGTGGATTC | + |
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Preference number: 4 (lower is better) Translates to: LLHDTSMLLGVLKSRNPVLAWST*CGFCGF Trigger: GAATCCACAAAATCCGCATCAAGTGGACCAAGCTAA...TACTGGATTTCTTGATTTCAGTACTCCTAAAAGCATGCTGGTGTCATGGAGTAG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000022108.9 |
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| CDS-3UTR TCA 90 bp | TATTCATTCAAAGCATTGCTAGCAACAGAAGAATGCATGGTGTATTTGTCAAGTCCCACTTTCGCGATCTaGGCACCGTCATTGAGACAA | + |
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Preference number: 4 (lower is better) Translates to: YSFKALLATEECMVYLSSPTFAI*APSLRQ Trigger: TTGTCTCAATGACGGTGCTCAGATCGCGAAAGTGGG...ACTTGACAAATACACCATGCATTCTTCTGTTGCTAGCAATGCTTTGAATGAATA 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022108.9 |
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| CDS-3UTR CCA 90 bp | TTACTTGAATATAAATATTGGTCCCTCTGGGGTCTCTGCAATCATAACAAGAAAGTAGCGTCCCAGTCGTaGAAAGTAAGGGAACACCAC | + |
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Preference number: 4 (lower is better) Translates to: LLEYKYWSLWGLCNHNKKVASQS*KVREHH Trigger: GTGGTGTTCCCTTACTTTCCACGACTGGGACGCTAC...TTTCTTGTTATGATTGCAGAGACCCCAGAGGGACCAATATTTATATTCAAGTAA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000022108.9 |
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| CDS-3UTR TCA 90 bp | TTGGGCACTGTATTGTGGATACAAACAAGAACAACTTTGGAAGTTGAGTCTTTAGATTTTGTGGATTCCTaGGCCAAATGCTGTAGGGTC | + |
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Preference number: 4 (lower is better) Translates to: LGTVLWIQTRTTLEVESLDFVDS*AKCCRV Trigger: GACCCTACAGCATTTGGCTCAGGAATCCACAAAATC...TAAAGACTCAACTTCCAAAGTTGTTCTTGTTTGTATCCACAATACAGTGCCCAA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000022108.9 |
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| CDS-3UTR CCA 90 bp | TTACTTGAATATAAATATTGGTCCCTCTGGGGTCTCTGCAATCATAACAAGAAAACTGCAGCGCCTTCTTaGTCGAGAAATAGGATAGCG | + |
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Preference number: 4 (lower is better) Translates to: LLEYKYWSLWGLCNHNKKTAAPS*SRNRIA Trigger: CGCTATCCTATTTCTCGACCAAGAAGGCGCTGCAGT...TTTCTTGTTATGATTGCAGAGACCCCAGAGGGACCAATATTTATATTCAAGTAA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000022108.9 |
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| CDS-3UTR GCA 90 bp | CTTGAATATAAATATTGGTCCCTCTGGGGTCTCTGCAATCATAACAAGAAACTTACGGGGGCCATTTTCTaGTTGGATGTGAATAACTCT | + |
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Preference number: 4 (lower is better) Translates to: LEYKYWSLWGLCNHNKKLTGAIF*LDVNNS Trigger: AGAGTTATTCACATCCAAGCAGAAAATGGCCCCCGT...AAGTTTCTTGTTATGATTGCAGAGACCCCAGAGGGACCAATATTTATATTCAAG 40% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000022108.9 |
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| CDS-3UTR GCA 90 bp | TATTCATTCAAAGCATTGCTAGCAACAGAAGAATGCATGGTGTATTTGTCAAGTTTGGTGATTGGGTACTaGACAGATCCATCACTGAGC | + |
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Preference number: 4 (lower is better) Translates to: YSFKALLATEECMVYLSSLVIGY*TDPSLS Trigger: GCTCAGTGATGGATCTGTGCAGTACCCAATCACCAA...ACTTGACAAATACACCATGCATTCTTCTGTTGCTAGCAATGCTTTGAATGAATA 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022108.9 |
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| CDS-3UTR CCA 90 bp | TTGGGCACTGTATTGTGGATACAAACAAGAACAACTTTGGAAGTTGAGTCTTTATCGATAAAATTTGCATaGCAGTGTCACGTTGCCACC | + |
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Preference number: 4 (lower is better) Translates to: LGTVLWIQTRTTLEVESLSIKFA*QCHVAT Trigger: GGTGGCAACGTGACACTGCCATGCAAATTTTATCGA...TAAAGACTCAACTTCCAAAGTTGTTCTTGTTTGTATCCACAATACAGTGCCCAA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000022108.9 |
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| CDS-3UTR CCA 90 bp | CTTACTGATGTCTGTATTATTCATAGCTTTTGCTGTACACTGTGCTGGCAGTCTCTTATGCTTTTTATCTaGGAAACCTACAAAGCGCAC | + |
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Preference number: 4 (lower is better) Translates to: LTDVCIIHSFCCTLCWQSLMLFI*ETYKAH Trigger: GTGCGCTTTGTAGGTTTCCCAGATAAAAAGCATAAG...AGACTGCCAGCACAGTGTACAGCAAAAGCTATGAATAATACAGACATCAGTAAG 40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000022108.9 |
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| 3UTR CAA 72 bp | GCTCTAACTCATTTGGGTGGGTATTCATTCAAAGCATaGCTAGCAACAGAAGAATGCATGGTGTATTTGTCA | + |
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Preference number: 4 (lower is better) Translates to: ALTHLGGYSFKA*LATEECMVYLS Trigger: TGACAAATACACCATGCATTCTTCTGTTGCTAGCAATGCTTTGAATGAATACCCACCCAAATGAGTTAGAGC 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022108.9 |
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| CDS-3UTR GCA 90 bp | TTACTTGAATATAAATATTGGTCCCTCTGGGGTCTCTGCAATCATAACAAGAAAGGTCTCGATAAAATTTaGATGGCAGTGTCACGTTGC | + |
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Preference number: 4 (lower is better) Translates to: LLEYKYWSLWGLCNHNKKGLDKI*MAVSRC Trigger: GCAACGTGACACTGCCATGCAAATTTTATCGAGACC...TTTCTTGTTATGATTGCAGAGACCCCAGAGGGACCAATATTTATATTCAAGTAA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000022108.9 |
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| 3UTR CAA 72 bp | TTAAAAACTCTGCCCAGCAGTGTTCATTCTAGGATGTaGTCAAGAATGGACAAATGGTGCACAATTGGTATA | + |
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Preference number: 4 (lower is better) Translates to: LKTLPSSVHSRM*SRMDKWCTIGI Trigger: TATACCAATTGTGCACCATTTGTCCATTCTTGACAACATCCTAGAATGAACACTGCTGGGCAGAGTTTTTAA 39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000022108.9 |
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| CDS-3UTR GCA 90 bp | CTTACTGATGTCTGTATTATTCATAGCTTTTGCTGTACACTGTGCTGGCAGTCTAGAAAACGTCATATCTaGTTTTATCCTTGTCCCAAA | + |
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Preference number: 4 (lower is better) Translates to: LTDVCIIHSFCCTLCWQSRKRHI*FYPCPK Trigger: TTTGGGACAAGGATAAAAGCAGATATGACGTTTTCT...AGACTGCCAGCACAGTGTACAGCAAAAGCTATGAATAATACAGACATCAGTAAG 38% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000022108.9 |
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| CDS-3UTR CCA 90 bp | TATTCATTCAAAGCATTGCTAGCAACAGAAGAATGCATGGTGTATTTGTCAAGTTTGATGCGGATTTTGTaGATTCCTGAGCCAAATGCT | + |
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Preference number: 4 (lower is better) Translates to: YSFKALLATEECMVYLSSLMRIL*IPEPNA Trigger: AGCATTTGGCTCAGGAATCCACAAAATCCGCATCAA...ACTTGACAAATACACCATGCATTCTTCTGTTGCTAGCAATGCTTTGAATGAATA 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000022108.9 |
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| CDS-3UTR GCA 90 bp | TATTCATTCAAAGCATTGCTAGCAACAGAAGAATGCATGGTGTATTTGTCAAGTACCCCGTATAGCTTATaGTTTTTATCTGGGAAACCT | + |
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Preference number: 4 (lower is better) Translates to: YSFKALLATEECMVYLSSTPYSL*FLSGKP Trigger: AGGTTTCCCAGATAAAAAGCATAAGCTATACGGGGT...ACTTGACAAATACACCATGCATTCTTCTGTTGCTAGCAATGCTTTGAATGAATA 37% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000022108.9 |
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| 3UTR CAA 72 bp | GCAATCATAACAAGAAACTTTAATTTAAGACTGGAGTaGCTAATACTGAAAGTCACTTTTCTGAACCTGGGC | + |
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Preference number: 4 (lower is better) Translates to: AIITRNFNLRLE*LILKVTFLNLG Trigger: GCCCAGGTTCAGAAAAGTGACTTTCAGTATTAGCAACTCCAGTCTTAAATTAAAGTTTCTTGTTATGATTGC 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000022108.9 |
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| 3UTR CAA 72 bp | AAATCAAGAAATCCAGTATGGCTGCCAGCAACCAAATaGGTATCTTATTTGAGTCTACTAATTGCCAAAATA | + |
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Preference number: 4 (lower is better) Translates to: KSRNPVWLPATK*VSYLSLLIAKI Trigger: TATTTTGGCAATTAGTAGACTCAAATAAGATACCAATTTGGTTGCTGGCAGCCATACTGGATTTCTTGATTT 35% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000022108.9 |
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| CDS CCA 90 bp | GTTCCTGACTCCAGGCACCGTGTTTTGGCCCCCGCAGGGCTCTCGTaGTTTGGTGATTGGGTACTGCACAGATCCATCACTGAGCCAGCC | + |
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Preference number: 5 (lower is better) Translates to: VPDSRHRVLAPAGLS*FGDWVLHRSITEPA Trigger: GGCTGGCTCAGTGATGGATCTGTGCAGTACCCAATCACCAAACCACGAGAGCCCTGCGGGGGCCAAAACACGGTGCCTGGAGTCAGGAAC 60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000022108.9 |
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| CDS GCA 90 bp | GTCAAAGGAAGCAATCACTGCGTCCTGGTCCAGACAAGCCTGGCGTaGCTCGTGAAAGTTAAGATTGTAGCGTCCCAGTCGTGGAAAGTA | + |
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Preference number: 5 (lower is better) Translates to: VKGSNHCVLVQTSLA*LVKVKIVASQSWKV Trigger: TACTTTCCACGACTGGGACGCTACAATCTTAACTTTCACGAGGCACGCCAGGCTTGTCTGGACCAGGACGCAGTGATTGCTTCCTTTGAC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022108.9 |
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| CDS CCA 90 bp | ATTTGCATGGCAGTGTCACGTTGCCACCTCGGTGAGAGAAGACCTTaGCTTGTTCTGCTTCCACAAGTAGACGGGGGCCATTTTCTGCTT | + |
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Preference number: 5 (lower is better) Translates to: ICMAVSRCHLGERRP*LVLLPQVDGGHFLL Trigger: AAGCAGAAAATGGCCCCCGTCTACTTGTGGAAGCAGAACAAGCCAAGGTCTTCTCTCACCGAGGTGGCAACGTGACACTGCCATGCAAAT 52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000022108.9 |
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| CDS-3UTR CAA 90 bp | CTACTCCATGACACCAGCATGCTTTTAGGAGTACTGAAATCAAGAAATCCAGTAGTCATTGAGACAAGCTaGCACCGCCTCATCGTAGGT | + |
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Preference number: 5 (lower is better) Translates to: LLHDTSMLLGVLKSRNPVVIETS*HRLIVG Trigger: ACCTACGATGAGGCGGTGCAAGCTTGTCTCAATGAC...TACTGGATTTCTTGATTTCAGTACTCCTAAAAGCATGCTGGTGTCATGGAGTAG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000022108.9 |
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| CDS-3UTR CAA 90 bp | CTTGAATATAAATATTGGTCCCTCTGGGGTCTCTGCAATCATAACAAGAAACTTCAGGGCTCTCGTGGTTaGGTGATTGGGTACTGCACA | + |
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Preference number: 5 (lower is better) Translates to: LEYKYWSLWGLCNHNKKLQGSRG*VIGYCT Trigger: TGTGCAGTACCCAATCACCAAACCACGAGAGCCCTG...AAGTTTCTTGTTATGATTGCAGAGACCCCAGAGGGACCAATATTTATATTCAAG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000022108.9 |
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| CDS-3UTR CAA 90 bp | CTACTCCATGACACCAGCATGCTTTTAGGAGTACTGAAATCAAGAAATCCAGTAGTGAATAACTCTGTCTaGATCTGGAGGAGTGTAGCT | + |
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Preference number: 5 (lower is better) Translates to: LLHDTSMLLGVLKSRNPVVNNSV*IWRSVA Trigger: AGCTACACTCCTCCAGATCAAGACAGAGTTATTCAC...TACTGGATTTCTTGATTTCAGTACTCCTAAAAGCATGCTGGTGTCATGGAGTAG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000022108.9 |
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| CDS-3UTR CAA 90 bp | TTGGGCACTGTATTGTGGATACAAACAAGAACAACTTTGGAAGTTGAGTCTTTACAGAAACACTCGACCTaGATAGCCTCCATAGGTCTT | + |
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Preference number: 5 (lower is better) Translates to: LGTVLWIQTRTTLEVESLQKHST*IASIGL Trigger: AAGACCTATGGAGGCTATCAAGGTCGAGTGTTTCTG...TAAAGACTCAACTTCCAAAGTTGTTCTTGTTTGTATCCACAATACAGTGCCCAA 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022108.9 |
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| CDS-3UTR CAA 90 bp | TTACTTGAATATAAATATTGGTCCCTCTGGGGTCTCTGCAATCATAACAAGAAAGGGGCCATTTTCTGCTaGGATGTGAATAACTCTGTC | + |
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Preference number: 5 (lower is better) Translates to: LLEYKYWSLWGLCNHNKKGAIFC*DVNNSV Trigger: GACAGAGTTATTCACATCCAAGCAGAAAATGGCCCC...TTTCTTGTTATGATTGCAGAGACCCCAGAGGGACCAATATTTATATTCAAGTAA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000022108.9 |
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| CDS-3UTR CAA 90 bp | TATTCATTCAAAGCATTGCTAGCAACAGAAGAATGCATGGTGTATTTGTCAAGTCACTTGATGCGGATTTaGTGGATTCCTGAGCCAAAT | + |
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Preference number: 5 (lower is better) Translates to: YSFKALLATEECMVYLSSHLMRI*WIPEPN Trigger: ATTTGGCTCAGGAATCCACAAAATCCGCATCAAGTG...ACTTGACAAATACACCATGCATTCTTCTGTTGCTAGCAATGCTTTGAATGAATA 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022108.9 |
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| CDS-3UTR CAA 90 bp | TATTCATTCAAAGCATTGCTAGCAACAGAAGAATGCATGGTGTATTTGTCAAGTGTTAGCTTGGTCCACTaGATGCGGATTTTGTGGATT | + |
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Preference number: 5 (lower is better) Translates to: YSFKALLATEECMVYLSSVSLVH*MRILWI Trigger: AATCCACAAAATCCGCATCAAGTGGACCAAGCTAAC...ACTTGACAAATACACCATGCATTCTTCTGTTGCTAGCAATGCTTTGAATGAATA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000022108.9 |
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| CDS CCA 72 bp | GCGCACTGCAGCCTCAGTCGGACTGCAGCGCCTTCTTaGTCGAGAAATAGGATAGCGGACGCTGCCATCCGC | + |
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Preference number: 6 (lower is better) Translates to: AHCSLSRTAAPS*SRNRIADAAIR Trigger: GCGGATGGCAGCGTCCGCTATCCTATTTCTCGACCAAGAAGGCGCTGCAGTCCGACTGAGGCTGCAGTGCGC 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022108.9 |
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| CDS CAA 72 bp | CCAAAACCCGTAGTTCCTGACTCCAGGCACCGTGTTTaGGCCCCCGCAGGGCTCTCGTGGTTTGGTGATTGG | + |
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Preference number: 6 (lower is better) Translates to: PKPVVPDSRHRV*APAGLSWFGDW Trigger: CCAATCACCAAACCACGAGAGCCCTGCGGGGGCCAAAACACGGTGCCTGGAGTCAGGAACTACGGGTTTTGG 60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000022108.9 |
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| CDS CAA 90 bp | ATCCTTGTCCCAAAACCCGTAGTTCCTGACTCCAGGCACCGTGTTTaGGCCCCCGCAGGGCTCTCGTGGTTTGGTGATTGGGTACTGCAC | + |
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Preference number: 6 (lower is better) Translates to: ILVPKPVVPDSRHRV*APAGLSWFGDWVLH Trigger: GTGCAGTACCCAATCACCAAACCACGAGAGCCCTGCGGGGGCCAAAACACGGTGCCTGGAGTCAGGAACTACGGGTTTTGGGACAAGGAT 58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000022108.9 |
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| CDS CCA 72 bp | GCAGTGTCACGTTGCCACCTCGGTGAGAGAAGACCTTaGCTTGTTCTGCTTCCACAAGTAGACGGGGGCCAT | + |
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Preference number: 6 (lower is better) Translates to: AVSRCHLGERRP*LVLLPQVDGGH Trigger: ATGGCCCCCGTCTACTTGTGGAAGCAGAACAAGCCAAGGTCTTCTCTCACCGAGGTGGCAACGTGACACTGC 57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000022108.9 |
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| CDS GCA 72 bp | AGCAATCACTGCGTCCTGGTCCAGACAAGCCTGGCGTaGCTCGTGAAAGTTAAGATTGTAGCGTCCCAGTCG | + |
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Preference number: 6 (lower is better) Translates to: SNHCVLVQTSLA*LVKVKIVASQS Trigger: CGACTGGGACGCTACAATCTTAACTTTCACGAGGCACGCCAGGCTTGTCTGGACCAGGACGCAGTGATTGCT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022108.9 |
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| CDS CAA 72 bp | CACTTTCGCGATCTGAGCACCGTCATTGAGACAAGCTaGCACCGCCTCATCGTAGGTGAGTTTGGTGGGGTG | + |
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Preference number: 6 (lower is better) Translates to: HFRDLSTVIETS*HRLIVGEFGGV Trigger: CACCCCACCAAACTCACCTACGATGAGGCGGTGCAAGCTTGTCTCAATGACGGTGCTCAGATCGCGAAAGTG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000022108.9 |
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| CDS CAA 90 bp | TATCTGGCCCACTTTCGCGATCTGAGCACCGTCATTGAGACAAGCTaGCACCGCCTCATCGTAGGTGAGTTTGGTGGGGTGGATCAGGTA | + |
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Preference number: 6 (lower is better) Translates to: YLAHFRDLSTVIETS*HRLIVGEFGGVDQV Trigger: TACCTGATCCACCCCACCAAACTCACCTACGATGAGGCGGTGCAAGCTTGTCTCAATGACGGTGCTCAGATCGCGAAAGTGGGCCAGATA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000022108.9 |
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| CDS TCA 72 bp | TTCCAGGCAGCAAATATCTGGCCCACTTTCGCGATCTaGGCACCGTCATTGAGACAAGCTTGCACCGCCTCA | + |
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Preference number: 6 (lower is better) Translates to: FQAANIWPTFAI*APSLRQACTAS Trigger: TGAGGCGGTGCAAGCTTGTCTCAATGACGGTGCTCAGATCGCGAAAGTGGGCCAGATATTTGCTGCCTGGAA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022108.9 |
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| CDS GCA 72 bp | CTTATGCTTTTTATCTGGGAAACCTACAAAGCGCACTaGAGCCTCAGTCGGACTGCAGCGCCTTCTTGGTCG | + |
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Preference number: 6 (lower is better) Translates to: LMLFIWETYKAH*SLSRTAAPSWS Trigger: CGACCAAGAAGGCGCTGCAGTCCGACTGAGGCTGCAGTGCGCTTTGTAGGTTTCCCAGATAAAAAGCATAAG 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000022108.9 |
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| CDS CAA 90 bp | CAGGGAGGCATCATTATCACTGCCTCCCTTCAGAAACACTCGACCTaGATAGCCTCCATAGGTCTTCTTGTGATAGCCCATGGAAACGAA | + |
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Preference number: 6 (lower is better) Translates to: QGGIIITASLQKHST*IASIGLLVIAHGNE Trigger: TTCGTTTCCATGGGCTATCACAAGAAGACCTATGGAGGCTATCAAGGTCGAGTGTTTCTGAAGGGAGGCAGTGATAATGATGCCTCCCTG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022108.9 |
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| CDS CAA 72 bp | ATCATTATCACTGCCTCCCTTCAGAAACACTCGACCTaGATAGCCTCCATAGGTCTTCTTGTGATAGCCCAT | + |
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Preference number: 6 (lower is better) Translates to: IIITASLQKHST*IASIGLLVIAH Trigger: ATGGGCTATCACAAGAAGACCTATGGAGGCTATCAAGGTCGAGTGTTTCTGAAGGGAGGCAGTGATAATGAT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022108.9 |
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