Pregenerated sensors for HAO1 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000027261Ensembl transcript IDs: ENSMUST00000028704.3
Found 67 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | TTACCACCATCCATTTCAATTCTACCTGGTGCTATTTTCTCAACATaGCAAATCCAAACCTCATGTTTCTCTGGGCATTTCCAGCATTTC | + |
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Preference number: 1 (lower is better) Translates to: LPPSISILPGAIFST*QIQTSCFSGHFQHF Trigger: GAAATGCTGGAAATGCCCAGAGAAACATGAGGTTTGGATTTGCCATGTTGAGAAAATAGCACCAGGTAGAATTGAAATGGATGGTGGTAA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028704.3 |
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| 3UTR CAA 90 bp | CTTTCACTTCAGCATGCTACCTGCAATCTCACCAGAGGATATCTTTaGTTCCCCAGCACTTTAGCCTGCCAGGGGATGACGTTGCCCAAA | + |
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Preference number: 2 (lower is better) Translates to: LSLQHATCNLTRGYL*FPSTLACQGMTLPK Trigger: TTTGGGCAACGTCATCCCCTGGCAGGCTAAAGTGCTGGGGAACAAAAGATATCCTCTGGTGAGATTGCAGGTAGCATGCTGAAGTGAAAG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000028704.3 |
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| 3UTR-3UTR GCA 90 bp | AAATCACAAATTACCACCATCCATTTCAATTCTACCTGGTGCTATTTTCTCAACCCCAGCACTTTAGCCTaGCAGGGGATGACGTTGCCC | + |
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Preference number: 2 (lower is better) Translates to: KSQITTIHFNSTWCYFLNPSTLA*QGMTLP Trigger: GGGCAACGTCATCCCCTGGCAGGCTAAAGTGCTGGG...GTTGAGAAAATAGCACCAGGTAGAATTGAAATGGATGGTGGTAATTTGTGATTT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000028704.3 |
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| 3UTR-3UTR GCA 90 bp | TCATCACGGACCCCACAAAATATGTACTTTACACTGAATGTGACTATAAATGAGTCTGTGGTCACCCTCTaGACAGTGTCTCTTTGTCAA | + |
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Preference number: 2 (lower is better) Translates to: SSRTPQNMYFTLNVTINESVVTL*TVSLCQ Trigger: TTGACAAAGAGACACTGTGCAGAGGGTGACCACAGA...CTCATTTATAGTCACATTCAGTGTAAAGTACATATTTTGTGGGGTCCGTGATGA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000028704.3 |
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| 3UTR-3UTR GCA 90 bp | AATCACAAATTACCACCATCCATTTCAATTCTACCTGGTGCTATTTTCTCAACACTTCAGCATGCTACCTaGAATCTCACCAGAGGATAT | + |
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Preference number: 2 (lower is better) Translates to: NHKLPPSISILPGAIFSTLQHAT*NLTRGY Trigger: ATATCCTCTGGTGAGATTGCAGGTAGCATGCTGAAG...TGTTGAGAAAATAGCACCAGGTAGAATTGAAATGGATGGTGGTAATTTGTGATT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028704.3 |
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| 3UTR-3UTR CCA 90 bp | AATCACAAATTACCACCATCCATTTCAATTCTACCTGGTGCTATTTTCTCAACAGGGTGGCTATTTTGTTaGAAAAGAACGACACCCTTT | + |
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Preference number: 2 (lower is better) Translates to: NHKLPPSISILPGAIFSTGWLFC*KRTTPF Trigger: AAAGGGTGTCGTTCTTTTCCAACAAAATAGCCACCC...TGTTGAGAAAATAGCACCAGGTAGAATTGAAATGGATGGTGGTAATTTGTGATT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000028704.3 |
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| 3UTR-3UTR CAA 90 bp | ATGAACAGTGAGGTCAGTATCTTTCACTTCAGCATGCTACCTGCAATCTCACCACTGCACAGTGTCTCTTaGTCAAGTAATCCACGCTGG | + |
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Preference number: 3 (lower is better) Translates to: MNSEVSIFHFSMLPAISPLHSVS*SSNPRW Trigger: CCAGCGTGGATTACTTGACAAAGAGACACTGTGCAG...TGGTGAGATTGCAGGTAGCATGCTGAAGTGAAAGATACTGACCTCACTGTTCAT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028704.3 |
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| 3UTR-3UTR CAA 90 bp | CTATTTTCTCAACATGGCAAATCCAAACCTCATGTTTCTCTGGGCATTTCCAGCTGCCAGGGGATGACGTaGCCCAAACACATTTTCAAT | + |
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Preference number: 3 (lower is better) Translates to: LFSQHGKSKPHVSLGISSCQGMT*PKHIFN Trigger: ATTGAAAATGTGTTTGGGCAACGTCATCCCCTGGCA...GCTGGAAATGCCCAGAGAAACATGAGGTTTGGATTTGCCATGTTGAGAAAATAG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000028704.3 |
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| 3UTR GCA 72 bp | TGTGGTCCCAACTGGACTAGACACATCCCTTTCAAATaGAATGAGTGCCACAAAACATCCAGACATATTCAG | + |
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Preference number: 3 (lower is better) Translates to: CGPNWTRHIPFK*NECHKTSRHIQ Trigger: CTGAATATGTCTGGATGTTTTGTGGCACTCATTGCATTTGAAAGGGATGTGTCTAGTCCAGTTGGGACCACA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028704.3 |
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| 3UTR CCA 72 bp | AGTTCAAAAGTAAAAATAGCTCCATGTGGTCCCAACTaGACTAGACACATCCCTTTCAAATGCAATGAGTGC | + |
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Preference number: 3 (lower is better) Translates to: SSKVKIAPCGPN*TRHIPFKCNEC Trigger: GCACTCATTGCATTTGAAAGGGATGTGTCTAGTCCAGTTGGGACCACATGGAGCTATTTTTACTTTTGAACT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000028704.3 |
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| 3UTR-3UTR CAA 90 bp | CATTTCAATTCTACCTGGTGCTATTTTCTCAACATGGCAAATCCAAACCTCATGAAAGAACGACACCCTTaGTATAGAAGTGGGGAGTTA | + |
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Preference number: 3 (lower is better) Translates to: HFNSTWCYFLNMANPNLMKERHP*YRSGEL Trigger: TAACTCCCCACTTCTATACAAAGGGTGTCGTTCTTT...CATGAGGTTTGGATTTGCCATGTTGAGAAAATAGCACCAGGTAGAATTGAAATG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000028704.3 |
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| 3UTR-3UTR CAA 90 bp | AATCACAAATTACCACCATCCATTTCAATTCTACCTGGTGCTATTTTCTCAACAAAAGGGGTGGCTATTTaGTTGGAAAAGAACGACACC | + |
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Preference number: 3 (lower is better) Translates to: NHKLPPSISILPGAIFSTKGVAI*LEKNDT Trigger: GGTGTCGTTCTTTTCCAACAAAATAGCCACCCCTTT...TGTTGAGAAAATAGCACCAGGTAGAATTGAAATGGATGGTGGTAATTTGTGATT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt. Matches the following 1 transcripts: ENSMUST00000028704.3 |
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| 3UTR GCA 72 bp | TCACAAATTACCACCATCCATTTCAATTCTACCTGGTaGTATTTTCTCAACATGGCAAATCCAAACCTCATG | + |
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Preference number: 3 (lower is better) Translates to: SQITTIHFNSTW*YFLNMANPNLM Trigger: CATGAGGTTTGGATTTGCCATGTTGAGAAAATAGCACCAGGTAGAATTGAAATGGATGGTGGTAATTTGTGA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028704.3 |
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| 3UTR CAA 72 bp | CAGCATGCTACCTGCAATCTCACCAGAGGATATCTTTaGTTCCCCAGCACTTTAGCCTGCCAGGGGATGACG | + |
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Preference number: 4 (lower is better) Translates to: QHATCNLTRGYL*FPSTLACQGMT Trigger: CGTCATCCCCTGGCAGGCTAAAGTGCTGGGGAACAAAAGATATCCTCTGGTGAGATTGCAGGTAGCATGCTG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000028704.3 |
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| CDS-3UTR CCA 90 bp | GTCTGTGGTCACCCTCTGCACAGTGTCTCTTTGTCAAGTAATCCACGCTGGAAAACCCACTCAGAGCCATaGCCAGTCGGAATTCTTCCT | + |
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Preference number: 4 (lower is better) Translates to: VCGHPLHSVSLSSNPRWKTHSEP*PVGILP Trigger: AGGAAGAATTCCGACTGGCCATGGCTCTGAGTGGGT...TTTCCAGCGTGGATTACTTGACAAAGAGACACTGTGCAGAGGGTGACCACAGAC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028704.3 |
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| CDS-3UTR TCA 90 bp | GTCTGTGGTCACCCTCTGCACAGTGTCTCTTTGTCAAGTAATCCACGCTGGAAATGCCACTTCTTCTATTaGGGAGGTAGCCCAAGAACT | + |
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Preference number: 4 (lower is better) Translates to: VCGHPLHSVSLSSNPRWKCHFFY*GGSPRT Trigger: AGTTCTTGGGCTACCTCCTCAATAGAAGAAGTGGCA...TTTCCAGCGTGGATTACTTGACAAAGAGACACTGTGCAGAGGGTGACCACAGAC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028704.3 |
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| CDS-3UTR TCA 90 bp | ATGAACAGTGAGGTCAGTATCTTTCACTTCAGCATGCTACCTGCAATCTCACCAGTTGTGGTGGCAGCTTaGACCTGTTCCGCACGTCAT | + |
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Preference number: 4 (lower is better) Translates to: MNSEVSIFHFSMLPAISPVVVAA*TCSARH Trigger: ATGACGTGCGGAACAGGTTCAAGCTGCCACCACAAC...TGGTGAGATTGCAGGTAGCATGCTGAAGTGAAAGATACTGACCTCACTGTTCAT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028704.3 |
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| CDS-3UTR GCA 90 bp | GTCTGTGGTCACCCTCTGCACAGTGTCTCTTTGTCAAGTAATCCACGCTGGAAAAAGAACTCAGCATCATaGCAGTTCCCATGGTCTGAC | + |
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Preference number: 4 (lower is better) Translates to: VCGHPLHSVSLSSNPRWKKNSAS*QFPWSD Trigger: GTCAGACCATGGGAACTGGCATGATGCTGAGTTCTT...TTTCCAGCGTGGATTACTTGACAAAGAGACACTGTGCAGAGGGTGACCACAGAC 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000028704.3 |
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| CDS-3UTR CCA 90 bp | TTGTTGGAAAAGAACGACACCCTTTGTATAGAAGTGGGGAGTTACAGTCTGTGGACACCTTTCTCCCCCTaGAAAGCCAAGCCCCAGATG | + |
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Preference number: 4 (lower is better) Translates to: LLEKNDTLCIEVGSYSLWTPFSP*KAKPQM Trigger: CATCTGGGGCTTGGCTTTCCAGGGGGAGAAAGGTGT...CCACAGACTGTAACTCCCCACTTCTATACAAAGGGTGTCGTTCTTTTCCAACAA 49% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt. Matches the following 1 transcripts: ENSMUST00000028704.3 |
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| CDS-3UTR TCA 90 bp | TTGTTGGAAAAGAACGACACCCTTTGTATAGAAGTGGGGAGTTACAGTCTGTGGTCAGCTAACGTCTCCTaGTCATTTGCCCCAGACCTG | + |
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Preference number: 4 (lower is better) Translates to: LLEKNDTLCIEVGSYSLWSANVS*SFAPDL Trigger: CAGGTCTGGGGCAAATGATCAGGAGACGTTAGCTGA...CCACAGACTGTAACTCCCCACTTCTATACAAAGGGTGTCGTTCTTTTCCAACAA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000028704.3 |
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| CDS-3UTR CCA 90 bp | CATCCATTTCAATTCTACCTGGTGCTATTTTCTCAACATGGCAAATCCAAACCTCCAGCGAAGTGCCTCTaGGCCAGCTTCTGCCACTTC | + |
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Preference number: 4 (lower is better) Translates to: HPFQFYLVLFSQHGKSKPPAKCL*ASFCHF Trigger: GAAGTGGCAGAAGCTGGCCCAGAGGCACTTCGCTGG...AGGTTTGGATTTGCCATGTTGAGAAAATAGCACCAGGTAGAATTGAAATGGATG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028704.3 |
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| CDS-3UTR TCA 90 bp | CTATTTTCTCAACATGGCAAATCCAAACCTCATGTTTCTCTGGGCATTTCCAGCATCTCGAGGACATCTTaGACACCTTTCTCCCCCTGG | + |
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Preference number: 4 (lower is better) Translates to: LFSQHGKSKPHVSLGISSISRTS*TPFSPW Trigger: CCAGGGGGAGAAAGGTGTTCAAGATGTCCTCGAGAT...GCTGGAAATGCCCAGAGAAACATGAGGTTTGGATTTGCCATGTTGAGAAAATAG 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000028704.3 |
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| CDS-3UTR GCA 90 bp | ATTTCAATTCTACCTGGTGCTATTTTCTCAACATGGCAAATCCAAACCTCATGTTCCGCACGTCATCAATaGGGTTGCCCAGGTAAGGGG | + |
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Preference number: 4 (lower is better) Translates to: ISILPGAIFSTWQIQTSCSARHQ*GCPGKG Trigger: CCCCTTACCTGGGCAACCGCATTGATGACGTGCGGA...ACATGAGGTTTGGATTTGCCATGTTGAGAAAATAGCACCAGGTAGAATTGAAAT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028704.3 |
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| CDS-3UTR TCA 90 bp | ATTTCAATTCTACCTGGTGCTATTTTCTCAACATGGCAAATCCAAACCTCATGTAGTTGTCGCGCCCCATaGTTCGACACCAAGATCCCA | + |
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Preference number: 4 (lower is better) Translates to: ISILPGAIFSTWQIQTSCSCRAP*FDTKIP Trigger: TGGGATCTTGGTGTCGAATCATGGGGCGCGACAACT...ACATGAGGTTTGGATTTGCCATGTTGAGAAAATAGCACCAGGTAGAATTGAAAT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000028704.3 |
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| CDS-3UTR TCA 90 bp | CTATTTTCTCAACATGGCAAATCCAAACCTCATGTTTCTCTGGGCATTTCCAGCCACATATTGGCATGCTaGCTCTCTGTCCTAAAACAG | + |
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Preference number: 4 (lower is better) Translates to: LFSQHGKSKPHVSLGISSHILAC*LSVLKQ Trigger: CTGTTTTAGGACAGAGAGTCAGCATGCCAATATGTG...GCTGGAAATGCCCAGAGAAACATGAGGTTTGGATTTGCCATGTTGAGAAAATAG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000028704.3 |
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| CDS-3UTR CCA 90 bp | TCATCACGGACCCCACAAAATATGTACTTTACACTGAATGTGACTATAAATGAGCATCCTGAGTTGTGGTaGCAGCTTGAACCTGTTCCG | + |
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Preference number: 4 (lower is better) Translates to: SSRTPQNMYFTLNVTINEHPELW*QLEPVP Trigger: CGGAACAGGTTCAAGCTGCCACCACAACTCAGGATG...CTCATTTATAGTCACATTCAGTGTAAAGTACATATTTTGTGGGGTCCGTGATGA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000028704.3 |
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| CDS-3UTR CCA 90 bp | AAATCACAAATTACCACCATCCATTTCAATTCTACCTGGTGCTATTTTCTCAACCCACAAAAACGGCCTTaGCTCCTAGGGCCAGAGCTT | + |
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Preference number: 4 (lower is better) Translates to: KSQITTIHFNSTWCYFLNPQKRP*LLGPEL Trigger: AAGCTCTGGCCCTAGGAGCCAAGGCCGTTTTTGTGG...GTTGAGAAAATAGCACCAGGTAGAATTGAAATGGATGGTGGTAATTTGTGATTT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000028704.3 |
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| CDS-3UTR TCA 90 bp | TCATCACGGACCCCACAAAATATGTACTTTACACTGAATGTGACTATAAATGAGCTAGGGCCAGAGCTTTaGGAACATCAGTACCTTTCC | + |
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Preference number: 4 (lower is better) Translates to: SSRTPQNMYFTLNVTINELGPEL*EHQYLS Trigger: GGAAAGGTACTGATGTTCTCAAAGCTCTGGCCCTAG...CTCATTTATAGTCACATTCAGTGTAAAGTACATATTTTGTGGGGTCCGTGATGA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000028704.3 |
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| CDS-3UTR TCA 90 bp | CATCCATTTCAATTCTACCTGGTGCTATTTTCTCAACATGGCAAATCCAAACCTCCAATGTCTTGTCGATaGCTTTCACATTCTGGCACC | + |
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Preference number: 4 (lower is better) Translates to: HPFQFYLVLFSQHGKSKPPMSCR*LSHSGT Trigger: GGTGCCAGAATGTGAAAGTCATCGACAAGACATTGG...AGGTTTGGATTTGCCATGTTGAGAAAATAGCACCAGGTAGAATTGAAATGGATG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028704.3 |
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| CDS-3UTR GCA 90 bp | CATTTCAATTCTACCTGGTGCTATTTTCTCAACATGGCAAATCCAAACCTCATGCGTCTCCTGATCATTTaGCCCAGACCTGTAATAGTC | + |
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Preference number: 4 (lower is better) Translates to: HFNSTWCYFLNMANPNLMRLLII*PRPVIV Trigger: GACTATTACAGGTCTGGGGCAAATGATCAGGAGACG...CATGAGGTTTGGATTTGCCATGTTGAGAAAATAGCACCAGGTAGAATTGAAATG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028704.3 |
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| CDS-3UTR CCA 90 bp | ATCCATTTCAATTCTACCTGGTGCTATTTTCTCAACATGGCAAATCCAAACCTCGTTGCGAAGCATCCGTaGATAGAGCTTCCATCTAGA | + |
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Preference number: 4 (lower is better) Translates to: IHFNSTWCYFLNMANPNLVAKHP*IELPSR Trigger: TCTAGATGGAAGCTCTATCCACGGATGCTTCGCAAC...GAGGTTTGGATTTGCCATGTTGAGAAAATAGCACCAGGTAGAATTGAAATGGAT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028704.3 |
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| CDS-3UTR CCA 90 bp | ATCCATTTCAATTCTACCTGGTGCTATTTTCTCAACATGGCAAATCCAAACCTCAGCCTCAACAATCTCTaGCAGGACATCAATAGTAGC | + |
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Preference number: 4 (lower is better) Translates to: IHFNSTWCYFLNMANPNLSLNNL*QDINSS Trigger: GCTACTATTGATGTCCTGCCAGAGATTGTTGAGGCT...GAGGTTTGGATTTGCCATGTTGAGAAAATAGCACCAGGTAGAATTGAAATGGAT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028704.3 |
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| CDS-3UTR CCA 90 bp | AAATCACAAATTACCACCATCCATTTCAATTCTACCTGGTGCTATTTTCTCAACATGACTTTCACATTCTaGCACCCACTCAGAGCCATG | + |
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Preference number: 4 (lower is better) Translates to: KSQITTIHFNSTWCYFLNMTFTF*HPLRAM Trigger: CATGGCTCTGAGTGGGTGCCAGAATGTGAAAGTCAT...GTTGAGAAAATAGCACCAGGTAGAATTGAAATGGATGGTGGTAATTTGTGATTT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028704.3 |
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| CDS-3UTR CCA 90 bp | CATCCATTTCAATTCTACCTGGTGCTATTTTCTCAACATGGCAAATCCAAACCTCATCTAGAAAATGCTTaGATGTTATCAGCTAACGTC | + |
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Preference number: 4 (lower is better) Translates to: HPFQFYLVLFSQHGKSKPHLENA*MLSANV Trigger: GACGTTAGCTGATAACATCCAAGCATTTTCTAGATG...AGGTTTGGATTTGCCATGTTGAGAAAATAGCACCAGGTAGAATTGAAATGGATG 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000028704.3 |
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| CDS TCA 90 bp | CATCCAGCGAAGTGCCTCTGGGCCAGCTTCTGCCACTTCTTCTATTaGGGAGGTAGCCCAAGAACTCAGCATCATGCCAGTTCCCATGGT | + |
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Preference number: 5 (lower is better) Translates to: HPAKCLWASFCHFFY*GGSPRTQHHASSHG Trigger: ACCATGGGAACTGGCATGATGCTGAGTTCTTGGGCTACCTCCTCAATAGAAGAAGTGGCAGAAGCTGGCCCAGAGGCACTTCGCTGGATG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028704.3 |
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| CDS TCA 90 bp | AGGACATCAATAGTAGCTGGCACCCCATCCAGTTGTCGCGCCCCATaGTTCGACACCAAGATCCCATCCACACCATGTTTAACAGCTTCC | + |
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Preference number: 5 (lower is better) Translates to: RTSIVAGTPSSCRAP*FDTKIPSTPCLTAS Trigger: GGAAGCTGTTAAACATGGTGTGGATGGGATCTTGGTGTCGAATCATGGGGCGCGACAACTGGATGGGGTGCCAGCTACTATTGATGTCCT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000028704.3 |
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| CDS TCA 90 bp | TCTTGGAAACAGCCAAAGGATTTTTCCTCACCAATGTCTTGTCGATaGCTTTCACATTCTGGCACCCACTCAGAGCCATGGCCAGTCGGA | + |
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Preference number: 5 (lower is better) Translates to: SWKQPKDFSSPMSCR*LSHSGTHSEPWPVG Trigger: TCCGACTGGCCATGGCTCTGAGTGGGTGCCAGAATGTGAAAGTCATCGACAAGACATTGGTGAGGAAAAATCCTTTGGCTGTTTCCAAGA 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000028704.3 |
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| CDS-3UTR CAA 90 bp | ATCCATTTCAATTCTACCTGGTGCTATTTTCTCAACATGGCAAATCCAAACCTCTGGCACCCCATCCAGTaGTCGCGCCCCATGATTCGA | + |
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Preference number: 5 (lower is better) Translates to: IHFNSTWCYFLNMANPNLWHPIQ*SRPMIR Trigger: TCGAATCATGGGGCGCGACAACTGGATGGGGTGCCA...GAGGTTTGGATTTGCCATGTTGAGAAAATAGCACCAGGTAGAATTGAAATGGAT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000028704.3 |
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| CDS-3UTR CAA 90 bp | ATGAACAGTGAGGTCAGTATCTTTCACTTCAGCATGCTACCTGCAATCTCACCAGTTTTTCATCCTGAGTaGTGGTGGCAGCTTGAACCT | + |
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Preference number: 5 (lower is better) Translates to: MNSEVSIFHFSMLPAISPVFHPE*WWQLEP Trigger: AGGTTCAAGCTGCCACCACAACTCAGGATGAAAAAC...TGGTGAGATTGCAGGTAGCATGCTGAAGTGAAAGATACTGACCTCACTGTTCAT 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000028704.3 |
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| CDS TCA 90 bp | CTTGGCATCATCACCTCTCAAAATGCCCTTTACAACAATAGGCAGTaGTGTCAATCGTCTGAGCCATGTAATATCATCCCAGCTGAGAGA | + |
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Preference number: 5 (lower is better) Translates to: LGIITSQNALYNNRQ*CQSSEPCNIIPAER Trigger: TCTCTCAGCTGGGATGATATTACATGGCTCAGACGATTGACATCACTGCCTATTGTTGTAAAGGGCATTTTGAGAGGTGATGATGCCAAG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028704.3 |
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| CDS GCA 90 bp | GAGCCATGTAATATCATCCCAGCTGAGAGATGGGTCTATAGCTTGTaGCACATATTCAGCAAGTCCACTGTTGTCTCCAAAATTTCCCTT | + |
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Preference number: 5 (lower is better) Translates to: EPCNIIPAERWVYSL*HIFSKSTVVSKISL Trigger: AAGGGAAATTTTGGAGACAACAGTGGACTTGCTGAATATGTGGCACAAGCTATAGACCCATCTCTCAGCTGGGATGATATTACATGGCTC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028704.3 |
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| CDS-3UTR CAA 90 bp | ATCCATTTCAATTCTACCTGGTGCTATTTTCTCAACATGGCAAATCCAAACCTCCCTAGGGCCAGAGCTTaGAGAACATCAGTACCTTTC | + |
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Preference number: 5 (lower is better) Translates to: IHFNSTWCYFLNMANPNLPRARA*RTSVPF Trigger: GAAAGGTACTGATGTTCTCAAAGCTCTGGCCCTAGG...GAGGTTTGGATTTGCCATGTTGAGAAAATAGCACCAGGTAGAATTGAAATGGAT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028704.3 |
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| CDS-3UTR CAA 90 bp | ACAGAAGACAGGTTAATGAACAGTGAGGTCAGTATCTTTCACTTCAGCATGCTAAGATGGGTCTATAGCTaGTGCCACATATTCAGCAAG | + |
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Preference number: 5 (lower is better) Translates to: TEDRLMNSEVSIFHFSMLRWVYS*CHIFSK Trigger: CTTGCTGAATATGTGGCACAAGCTATAGACCCATCT...TAGCATGCTGAAGTGAAAGATACTGACCTCACTGTTCATTAACCTGTCTTCTGT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028704.3 |
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| CDS-3UTR CAA 90 bp | ATTTCAATTCTACCTGGTGCTATTTTCTCAACATGGCAAATCCAAACCTCATGTTATCTCGAGGACATCTaGAACACCTTTCTCCCCCTG | + |
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Preference number: 5 (lower is better) Translates to: ISILPGAIFSTWQIQTSCYLEDI*NTFLPL Trigger: CAGGGGGAGAAAGGTGTTCAAGATGTCCTCGAGATA...ACATGAGGTTTGGATTTGCCATGTTGAGAAAATAGCACCAGGTAGAATTGAAAT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000028704.3 |
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| CDS-3UTR CAA 90 bp | AAATCACAAATTACCACCATCCATTTCAATTCTACCTGGTGCTATTTTCTCAACACGTCTCCTGATCATTaGCCCCAGACCTGTAATAGT | + |
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Preference number: 5 (lower is better) Translates to: KSQITTIHFNSTWCYFLNTSPDH*PQTCNS Trigger: ACTATTACAGGTCTGGGGCAAATGATCAGGAGACGT...GTTGAGAAAATAGCACCAGGTAGAATTGAAATGGATGGTGGTAATTTGTGATTT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000028704.3 |
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| CDS-3UTR CAA 90 bp | AATCACAAATTACCACCATCCATTTCAATTCTACCTGGTGCTATTTTCTCAACATTTGTAGATGTACAGTaGCATCCAGCGAAGTGCCTC | + |
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Preference number: 5 (lower is better) Translates to: NHKLPPSISILPGAIFSTFVDVQ*HPAKCL Trigger: GAGGCACTTCGCTGGATGCAACTGTACATCTACAAA...TGTTGAGAAAATAGCACCAGGTAGAATTGAAATGGATGGTGGTAATTTGTGATT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028704.3 |
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| CDS-3UTR CAA 90 bp | TCATCACGGACCCCACAAAATATGTACTTTACACTGAATGTGACTATAAATGAGTTCCTCACCAATGTCTaGTCGATGACTTTCACATTC | + |
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Preference number: 5 (lower is better) Translates to: SSRTPQNMYFTLNVTINEFLTNV*SMTFTF Trigger: GAATGTGAAAGTCATCGACAAGACATTGGTGAGGAA...CTCATTTATAGTCACATTCAGTGTAAAGTACATATTTTGTGGGGTCCGTGATGA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000028704.3 |
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| CDS-3UTR CAA 90 bp | AAATCACAAATTACCACCATCCATTTCAATTCTACCTGGTGCTATTTTCTCAACGTCCTAAAACAGAAGTaGACAGATCGATATCAGCAA | + |
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Preference number: 5 (lower is better) Translates to: KSQITTIHFNSTWCYFLNVLKQK*TDRYQQ Trigger: TTGCTGATATCGATCTGTCAACTTCTGTTTTAGGAC...GTTGAGAAAATAGCACCAGGTAGAATTGAAATGGATGGTGGTAATTTGTGATTT 37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000028704.3 |
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| CDS CCA 72 bp | TCATGCCAGTTCCCATGGTCTGACAGGCTCGCACAGTaGCCAGCTCCCCGTCCACGTGAGCCATGCACTGCA | + |
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Preference number: 6 (lower is better) Translates to: SCQFPWSDRLAQ*PAPRPREPCTA Trigger: TGCAGTGCATGGCTCACGTGGACGGGGAGCTGGCCACTGTGCGAGCCTGTCAGACCATGGGAACTGGCATGA 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028704.3 |
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| CDS CAA 72 bp | TGGCAGGACATCAATAGTAGCTGGCACCCCATCCAGTaGTCGCGCCCCATGATTCGACACCAAGATCCCATC | + |
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Preference number: 6 (lower is better) Translates to: WQDINSSWHPIQ*SRPMIRHQDPI Trigger: GATGGGATCTTGGTGTCGAATCATGGGGCGCGACAACTGGATGGGGTGCCAGCTACTATTGATGTCCTGCCA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000028704.3 |
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| CDS CCA 72 bp | AGCCTCAACAATCTCTGGCAGGACATCAATAGTAGCTaGCACCCCATCCAGTTGTCGCGCCCCATGATTCGA | + |
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Preference number: 6 (lower is better) Translates to: SLNNLWQDINSS*HPIQLSRPMIR Trigger: TCGAATCATGGGGCGCGACAACTGGATGGGGTGCCAGCTACTATTGATGTCCTGCCAGAGATTGTTGAGGCT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000028704.3 |
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| CDS CAA 72 bp | CTGTCTGCTGATCTCACGGTCTTTGTAGATGTACAGTaGCATCCAGCGAAGTGCCTCTGGGCCAGCTTCTGC | + |
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Preference number: 6 (lower is better) Translates to: LSADLTVFVDVQ*HPAKCLWASFC Trigger: GCAGAAGCTGGCCCAGAGGCACTTCGCTGGATGCAACTGTACATCTACAAAGACCGTGAGATCAGCAGACAG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028704.3 |
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| CDS CAA 90 bp | AACAATCTCTGGCAGGACATCAATAGTAGCTGGCACCCCATCCAGTaGTCGCGCCCCATGATTCGACACCAAGATCCCATCCACACCATG | + |
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Preference number: 6 (lower is better) Translates to: NNLWQDINSSWHPIQ*SRPMIRHQDPIHTM Trigger: CATGGTGTGGATGGGATCTTGGTGTCGAATCATGGGGCGCGACAACTGGATGGGGTGCCAGCTACTATTGATGTCCTGCCAGAGATTGTT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000028704.3 |
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| CDS TCA 72 bp | AAGTGCCTCTGGGCCAGCTTCTGCCACTTCTTCTATTaGGGAGGTAGCCCAAGAACTCAGCATCATGCCAGT | + |
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Preference number: 6 (lower is better) Translates to: KCLWASFCHFFY*GGSPRTQHHAS Trigger: ACTGGCATGATGCTGAGTTCTTGGGCTACCTCCTCAATAGAAGAAGTGGCAGAAGCTGGCCCAGAGGCACTT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028704.3 |
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| CDS TCA 72 bp | ATAGTAGCTGGCACCCCATCCAGTTGTCGCGCCCCATaGTTCGACACCAAGATCCCATCCACACCATGTTTA | + |
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Preference number: 6 (lower is better) Translates to: IVAGTPSSCRAP*FDTKIPSTPCL Trigger: TAAACATGGTGTGGATGGGATCTTGGTGTCGAATCATGGGGCGCGACAACTGGATGGGGTGCCAGCTACTAT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000028704.3 |
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| CDS CCA 72 bp | GACTTCTACCTTCCCTTCCACAGCCTCAACAATCTCTaGCAGGACATCAATAGTAGCTGGCACCCCATCCAG | + |
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Preference number: 6 (lower is better) Translates to: DFYLPFHSLNNL*QDINSSWHPIQ Trigger: CTGGATGGGGTGCCAGCTACTATTGATGTCCTGCCAGAGATTGTTGAGGCTGTGGAAGGGAAGGTAGAAGTC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028704.3 |
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| CDS CAA 90 bp | CTTCACTATCTGTCTGCTGATCTCACGGTCTTTGTAGATGTACAGTaGCATCCAGCGAAGTGCCTCTGGGCCAGCTTCTGCCACTTCTTC | + |
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Preference number: 6 (lower is better) Translates to: LHYLSADLTVFVDVQ*HPAKCLWASFCHFF Trigger: GAAGAAGTGGCAGAAGCTGGCCCAGAGGCACTTCGCTGGATGCAACTGTACATCTACAAAGACCGTGAGATCAGCAGACAGATAGTGAAG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028704.3 |
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| CDS CAA 72 bp | GTTTCAAAGTTTTTCATCCTGAGTTGTGGTGGCAGCTaGAACCTGTTCCGCACGTCATCAATGCGGTTGCCC | + |
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Preference number: 6 (lower is better) Translates to: VSKFFILSCGGS*NLFRTSSMRLP Trigger: GGGCAACCGCATTGATGACGTGCGGAACAGGTTCAAGCTGCCACCACAACTCAGGATGAAAAACTTTGAAAC 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000028704.3 |
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| CDS CCA 72 bp | TCGTCTGAGCCATGTAATATCATCCCAGCTGAGAGATaGGTCTATAGCTTGTGCCACATATTCAGCAAGTCC | + |
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Preference number: 6 (lower is better) Translates to: SSEPCNIIPAER*VYSLCHIFSKS Trigger: GGACTTGCTGAATATGTGGCACAAGCTATAGACCCATCTCTCAGCTGGGATGATATTACATGGCTCAGACGA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028704.3 |
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| CDS CCA 72 bp | ATCATTGGTTTCAAAGTTTTTCATCCTGAGTTGTGGTaGCAGCTTGAACCTGTTCCGCACGTCATCAATGCG | + |
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Preference number: 6 (lower is better) Translates to: IIGFKVFHPELW*QLEPVPHVINA Trigger: CGCATTGATGACGTGCGGAACAGGTTCAAGCTGCCACCACAACTCAGGATGAAAAACTTTGAAACCAATGAT 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000028704.3 |
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| CDS CAA 72 bp | TGTAATATCATCCCAGCTGAGAGATGGGTCTATAGCTaGTGCCACATATTCAGCAAGTCCACTGTTGTCTCC | + |
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Preference number: 6 (lower is better) Translates to: CNIIPAERWVYS*CHIFSKSTVVS Trigger: GGAGACAACAGTGGACTTGCTGAATATGTGGCACAAGCTATAGACCCATCTCTCAGCTGGGATGATATTACA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028704.3 |
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| CDS CAA 90 bp | TCTGAGCCATGTAATATCATCCCAGCTGAGAGATGGGTCTATAGCTaGTGCCACATATTCAGCAAGTCCACTGTTGTCTCCAAAATTTCC | + |
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Preference number: 6 (lower is better) Translates to: SEPCNIIPAERWVYS*CHIFSKSTVVSKIS Trigger: GGAAATTTTGGAGACAACAGTGGACTTGCTGAATATGTGGCACAAGCTATAGACCCATCTCTCAGCTGGGATGATATTACATGGCTCAGA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028704.3 |
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| CDS GCA 72 bp | AATATCATCCCAGCTGAGAGATGGGTCTATAGCTTGTaGCACATATTCAGCAAGTCCACTGTTGTCTCCAAA | + |
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Preference number: 6 (lower is better) Translates to: NIIPAERWVYSL*HIFSKSTVVSK Trigger: TTTGGAGACAACAGTGGACTTGCTGAATATGTGGCACAAGCTATAGACCCATCTCTCAGCTGGGATGATATT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028704.3 |
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| CDS CAA 72 bp | TTGGAAACAGCCAAAGGATTTTTCCTCACCAATGTCTaGTCGATGACTTTCACATTCTGGCACCCACTCAGA | + |
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Preference number: 6 (lower is better) Translates to: LETAKGFFLTNV*SMTFTFWHPLR Trigger: TCTGAGTGGGTGCCAGAATGTGAAAGTCATCGACAAGACATTGGTGAGGAAAAATCCTTTGGCTGTTTCCAA 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000028704.3 |
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| CDS CCA 72 bp | CAAATCATTGGTTTCAAAGTTTTTCATCCTGAGTTGTaGTGGCAGCTTGAACCTGTTCCGCACGTCATCAAT | + |
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Preference number: 6 (lower is better) Translates to: QIIGFKVFHPEL*WQLEPVPHVIN Trigger: ATTGATGACGTGCGGAACAGGTTCAAGCTGCCACCACAACTCAGGATGAAAAACTTTGAAACCAATGATTTG 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000028704.3 |
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| CDS CAA 72 bp | ATGCTTGGATGTTATCAGCTAACGTCTCCTGATCATTaGCCCCAGACCTGTAATAGTCATACACTGACTTCT | + |
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Preference number: 6 (lower is better) Translates to: MLGCYQLTSPDH*PQTCNSHTLTS Trigger: AGAAGTCAGTGTATGACTATTACAGGTCTGGGGCAAATGATCAGGAGACGTTAGCTGATAACATCCAAGCAT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028704.3 |
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| CDS TCA 72 bp | ATCACCTCTCAAAATGCCCTTTACAACAATAGGCAGTaGTGTCAATCGTCTGAGCCATGTAATATCATCCCA | + |
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Preference number: 6 (lower is better) Translates to: ITSQNALYNNRQ*CQSSEPCNIIP Trigger: TGGGATGATATTACATGGCTCAGACGATTGACATCACTGCCTATTGTTGTAAAGGGCATTTTGAGAGGTGAT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028704.3 |
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