Pregenerated sensors for HAND2 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000038193Ensembl transcript IDs: ENSMUST00000040104.5
Found 48 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | CTTCACATATGCACTAGTGTCCACTTTGTTTTATCTGGAAAGAGTTaGGTAAGGAGGCGGGGGACAACGCTGGTGTCTACACAGCCAAGA | + |
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Preference number: 1 (lower is better) Translates to: LHICTSVHFVLSGKS*VRRRGTTLVSTQPR Trigger: TCTTGGCTGTGTAGACACCAGCGTTGTCCCCCGCCTCCTTACCCAACTCTTTCCAGATAAAACAAAGTGGACACTAGTGCATATGTGAAG 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000040104.5 |
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| 3UTR TCA 90 bp | ACAAGAAGCTGGTGGAAACATCTTCGACTAGGGGACAATGACATTTaGAATGTGACAGCACTAGATAACCGACCCGACAGAAATGTTAGC | + |
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Preference number: 1 (lower is better) Translates to: TRSWWKHLRLGDNDI*NVTALDNRPDRNVS Trigger: GCTAACATTTCTGTCGGGTCGGTTATCTAGTGCTGTCACATTTCAAATGTCATTGTCCCCTAGTCGAAGATGTTTCCACCAGCTTCTTGT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040104.5 |
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| 3UTR-3UTR GCA 90 bp | GAAAGAAGGGGAAGGAAATTGCACATAAATAAACCGGATGATCCAACTGCAAGAGGGGAGTCCTGGGTCTaGATCTGGCGCCTTGGCCCC | + |
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Preference number: 2 (lower is better) Translates to: ERRGRKLHINKPDDPTARGESWV*IWRLGP Trigger: GGGGCCAAGGCGCCAGATGCAGACCCAGGACTCCCC...TCTTGCAGTTGGATCATCCGGTTTATTTATGTGCAATTTCCTTCCCCTTCTTTC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000040104.5 |
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| 3UTR-3UTR CCA 90 bp | GAAAGAAGGGGAAGGAAATTGCACATAAATAAACCGGATGATCCAACTGCAAGATCCTGGGTCTGCATCTaGCGCCTTGGCCCCCGGCTC | + |
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Preference number: 2 (lower is better) Translates to: ERRGRKLHINKPDDPTARSWVCI*RLGPRL Trigger: GAGCCGGGGGCCAAGGCGCCAGATGCAGACCCAGGA...TCTTGCAGTTGGATCATCCGGTTTATTTATGTGCAATTTCCTTCCCCTTCTTTC 52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000040104.5 |
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| 3UTR-3UTR CCA 90 bp | GATACACTTCACATATGCACTAGTGTCCACTTTGTTTTATCTGGAAAGAGTTGGGCTTTCGGGGAGTCCTaGGTCTGCATCTGGCGCCTT | + |
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Preference number: 2 (lower is better) Translates to: DTLHICTSVHFVLSGKSWAFGES*VCIWRL Trigger: AAGGCGCCAGATGCAGACCCAGGACTCCCCGAAAGC...CCAACTCTTTCCAGATAAAACAAAGTGGACACTAGTGCATATGTGAAGTGTATC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000040104.5 |
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| 3UTR-3UTR CCA 90 bp | GATACACTTCACATATGCACTAGTGTCCACTTTGTTTTATCTGGAAAGAGTTGGATGCTCAAAGGTGGGTaGGTGGGGGCGGGCAGAAAG | + |
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Preference number: 2 (lower is better) Translates to: DTLHICTSVHFVLSGKSWMLKGG*VGAGRK Trigger: CTTTCTGCCCGCCCCCACCCACCCACCTTTGAGCAT...CCAACTCTTTCCAGATAAAACAAAGTGGACACTAGTGCATATGTGAAGTGTATC 48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000040104.5 |
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| 3UTR-3UTR CCA 90 bp | ACACCTTCAATATTAATTAAATTCCACTTAGTTTTAGAGGACGGAAGCGCACAAGGCGGGGGACAACGCTaGTGTCTACACAGCCAAGAG | + |
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Preference number: 2 (lower is better) Translates to: TPSILIKFHLVLEDGSAQGGGQR*CLHSQE Trigger: CTCTTGGCTGTGTAGACACCAGCGTTGTCCCCCGCC...TTGTGCGCTTCCGTCCTCTAAAACTAAGTGGAATTTAATTAATATTGAAGGTGT 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000040104.5 |
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| 3UTR CCA 72 bp | AGCCCGAGGGCTTTCGGGGAGTCCTGGGTCTGCATCTaGCGCCTTGGCCCCCGGCTCACTGCTCTCCTCTTC | + |
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Preference number: 3 (lower is better) Translates to: SPRAFGESWVCI*RLGPRLTALLF Trigger: GAAGAGGAGAGCAGTGAGCCGGGGGCCAAGGCGCCAGATGCAGACCCAGGACTCCCCGAAAGCCCTCGGGCT 68% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000040104.5 |
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| 3UTR-3UTR CAA 90 bp | AAAGAGTTGGGTAAGGAGGCGGGGGACAACGCTGGTGTCTACACAGCCAAGAGGTCTGCATCTGGCGCCTaGGCCCCCGGCTCACTGCTC | + |
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Preference number: 3 (lower is better) Translates to: KELGKEAGDNAGVYTAKRSASGA*APGSLL Trigger: GAGCAGTGAGCCGGGGGCCAAGGCGCCAGATGCAGA...CCTCTTGGCTGTGTAGACACCAGCGTTGTCCCCCGCCTCCTTACCCAACTCTTT 62% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000040104.5 |
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| 3UTR CCA 72 bp | TGCACTAGTGTCCACTTTGTTTTATCTGGAAAGAGTTaGGTAAGGAGGCGGGGGACAACGCTGGTGTCTACA | + |
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Preference number: 3 (lower is better) Translates to: CTSVHFVLSGKS*VRRRGTTLVST Trigger: TGTAGACACCAGCGTTGTCCCCCGCCTCCTTACCCAACTCTTTCCAGATAAAACAAAGTGGACACTAGTGCA 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000040104.5 |
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| 3UTR TCA 72 bp | TGGTGGAAACATCTTCGACTAGGGGACAATGACATTTaGAATGTGACAGCACTAGATAACCGACCCGACAGA | + |
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Preference number: 3 (lower is better) Translates to: WWKHLRLGDNDI*NVTALDNRPDR Trigger: TCTGTCGGGTCGGTTATCTAGTGCTGTCACATTTCAAATGTCATTGTCCCCTAGTCGAAGATGTTTCCACCA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040104.5 |
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| CDS-3UTR GCA 90 bp | AGGGCTTTCGGGGAGTCCTGGGTCTGCATCTGGCGCCTTGGCCCCCGGCTCACTTCCAGGGCCCAGACGTaGTGTGGCCAGCCTGTCCGG | + |
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Preference number: 4 (lower is better) Translates to: RAFGESWVCIWRLGPRLTSRAQT*CGQPVR Trigger: CCGGACAGGCTGGCCACAGCACGTCTGGGCCCTGGA...AGTGAGCCGGGGGCCAAGGCGCCAGATGCAGACCCAGGACTCCCCGAAAGCCCT 69% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000040104.5 |
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| CDS-3UTR CCA 90 bp | AGGGCTTTCGGGGAGTCCTGGGTCTGCATCTGGCGCCTTGGCCCCCGGCTCACTTCCGCCTCTCCGTTCTaGTCGTCCTTGGCCAGCAGA | + |
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Preference number: 4 (lower is better) Translates to: RAFGESWVCIWRLGPRLTSASPF*SSLASR Trigger: TCTGCTGGCCAAGGACGACCAGAACGGAGAGGCGGA...AGTGAGCCGGGGGCCAAGGCGCCAGATGCAGACCCAGGACTCCCCGAAAGCCCT 66% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000040104.5 |
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| CDS-3UTR CCA 90 bp | AAAGAGTTGGGTAAGGAGGCGGGGGACAACGCTGGTGTCTACACAGCCAAGAGGGGCCCGCGGCACCGCTaGCGTACTCGGGGCTGTAGG | + |
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Preference number: 4 (lower is better) Translates to: KELGKEAGDNAGVYTAKRGPRHR*RTRGCR Trigger: CCTACAGCCCCGAGTACGCCAGCGGTGCCGCGGGCC...CCTCTTGGCTGTGTAGACACCAGCGTTGTCCCCCGCCTCCTTACCCAACTCTTT 64% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000040104.5 |
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| CDS-3UTR CCA 90 bp | AAAGAGTTGGGTAAGGAGGCGGGGGACAACGCTGGTGTCTACACAGCCAAGAGGGCCGCTCCTTGCGGTTaGCGGTGCCCCGGCGCTTCA | + |
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Preference number: 4 (lower is better) Translates to: KELGKEAGDNAGVYTAKRAAPCG*RCPGAS Trigger: TGAAGCGCCGGGGCACCGCCAACCGCAAGGAGCGGC...CCTCTTGGCTGTGTAGACACCAGCGTTGTCCCCCGCCTCCTTACCCAACTCTTT 63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000040104.5 |
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| CDS-3UTR CCA 90 bp | AGGGCTTTCGGGGAGTCCTGGGTCTGCATCTGGCGCCTTGGCCCCCGGCTCACTAGCCTGTCCGGCCTTTaGTTTTCTTGTCGTTGCTGC | + |
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Preference number: 4 (lower is better) Translates to: RAFGESWVCIWRLGPRLTSLSGL*FSCRCC Trigger: GCAGCAACGACAAGAAAACCAAAGGCCGGACAGGCT...AGTGAGCCGGGGGCCAAGGCGCCAGATGCAGACCCAGGACTCCCCGAAAGCCCT 62% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000040104.5 |
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| CDS-3UTR TCA 90 bp | AAAGAGTTGGGTAAGGAGGCGGGGGACAACGCTGGTGTCTACACAGCCAAGAGGCCAGGCGCAGTGTCTTaGTCTTGGAGAGTTTGGTGT | + |
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Preference number: 4 (lower is better) Translates to: KELGKEAGDNAGVYTAKRPGAVS*SWRVWC Trigger: ACACCAAACTCTCCAAGATCAAGACACTGCGCCTGG...CCTCTTGGCTGTGTAGACACCAGCGTTGTCCCCCGCCTCCTTACCCAACTCTTT 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000040104.5 |
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| CDS-3UTR GCA 90 bp | GAAAGAAGGGGAAGGAAATTGCACATAAATAAACCGGATGATCCAACTGCAAGACCTTGCGGTTGGCGGTaGCCCGGCGCTTCACCGGGC | + |
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Preference number: 4 (lower is better) Translates to: ERRGRKLHINKPDDPTARPCGWR*PGASPG Trigger: GCCCGGTGAAGCGCCGGGGCACCGCCAACCGCAAGG...TCTTGCAGTTGGATCATCCGGTTTATTTATGTGCAATTTCCTTCCCCTTCTTTC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040104.5 |
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| CDS-3UTR GCA 90 bp | CCCCCAGGAATATTTATATCCGAAGGCCGAGTATTAAAAAGATACACTTCACATGGTTCTCCTCGTGGCTaGAGCGGCTGGCGGCGGCGG | + |
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Preference number: 4 (lower is better) Translates to: PPGIFISEGRVLKRYTSHGSPRG*SGWRRR Trigger: CCGCCGCCGCCAGCCGCTGCAGCCACGAGGAGAACC...ATGTGAAGTGTATCTTTTTAATACTCGGCCTTCGGATATAAATATTCCTGGGGG 53% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000040104.5 |
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| CDS-3UTR GCA 90 bp | CCCCCAGGAATATTTATATCCGAAGGCCGAGTATTAAAAAGATACACTTCACATTCCTGCGCCGCTCCTTaGGGTTGGCGGTGCCCCGGC | + |
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Preference number: 4 (lower is better) Translates to: PPGIFISEGRVLKRYTSHSCAAP*GWRCPG Trigger: GCCGGGGCACCGCCAACCGCAAGGAGCGGCGCAGGA...ATGTGAAGTGTATCTTTTTAATACTCGGCCTTCGGATATAAATATTCCTGGGGG 53% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENSMUST00000040104.5 |
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| CDS-3UTR TCA 90 bp | GAAAGAAGGGGAAGGAAATTGCACATAAATAAACCGGATGATCCAACTGCAAGACGGCGAAGGCGCTGTTaGTGCTCTGAGTCCTGCGCC | + |
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Preference number: 4 (lower is better) Translates to: ERRGRKLHINKPDDPTARRRRRC*CSESCA Trigger: GGCGCAGGACTCAGAGCATCAACAGCGCCTTCGCCG...TCTTGCAGTTGGATCATCCGGTTTATTTATGTGCAATTTCCTTCCCCTTCTTTC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040104.5 |
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| CDS-3UTR TCA 90 bp | GATACACTTCACATATGCACTAGTGTCCACTTTGTTTTATCTGGAAAGAGTTGGGCGCTGTTGATGCTCTaGGTCCTGCGCCGCTCCTTG | + |
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Preference number: 4 (lower is better) Translates to: DTLHICTSVHFVLSGKSWALLML*VLRRSL Trigger: CAAGGAGCGGCGCAGGACTCAGAGCATCAACAGCGC...CCAACTCTTTCCAGATAAAACAAAGTGGACACTAGTGCATATGTGAAGTGTATC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040104.5 |
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| CDS-3UTR CCA 90 bp | GATACACTTCACATATGCACTAGTGTCCACTTTGTTTTATCTGGAAAGAGTTGGGGCGACATCTCCGGGTaGCCAATAAGCCAGCCGTGG | + |
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Preference number: 4 (lower is better) Translates to: DTLHICTSVHFVLSGKSWGDISG*PISQPW Trigger: CCACGGCTGGCTTATTGGCCACCCGGAGATGTCGCC...CCAACTCTTTCCAGATAAAACAAAGTGGACACTAGTGCATATGTGAAGTGTATC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000040104.5 |
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| CDS-3UTR CCA 90 bp | ACACCTTCAATATTAATTAAATTCCACTTAGTTTTAGAGGACGGAAGCGCACAAGGCCCAGACGTGCTGTaGCCAGCCTGTCCGGCCTTT | + |
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Preference number: 4 (lower is better) Translates to: TPSILIKFHLVLEDGSAQGPDVL*PACPAF Trigger: AAAGGCCGGACAGGCTGGCCACAGCACGTCTGGGCC...TTGTGCGCTTCCGTCCTCTAAAACTAAGTGGAATTTAATTAATATTGAAGGTGT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040104.5 |
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| CDS-3UTR GCA 90 bp | GATACACTTCACATATGCACTAGTGTCCACTTTGTTTTATCTGGAAAGAGTTGGTTTTCTTGTCGTTGCTaGTCACTGTGCTTTTCAAGA | + |
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Preference number: 4 (lower is better) Translates to: DTLHICTSVHFVLSGKSWFSCRC*SLCFSR Trigger: TCTTGAAAAGCACAGTGAGCAGCAACGACAAGAAAA...CCAACTCTTTCCAGATAAAACAAAGTGGACACTAGTGCATATGTGAAGTGTATC 39% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000040104.5 |
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| CDS-3UTR GCA 90 bp | ACACCTTCAATATTAATTAAATTCCACTTAGTTTTAGAGGACGGAAGCGCACAATGGTTTTCTTGTCGTTaGTGCTCACTGTGCTTTTCA | + |
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Preference number: 4 (lower is better) Translates to: TPSILIKFHLVLEDGSAQWFSCR*CSLCFS Trigger: TGAAAAGCACAGTGAGCAGCAACGACAAGAAAACCA...TTGTGCGCTTCCGTCCTCTAAAACTAAGTGGAATTTAATTAATATTGAAGGTGT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000040104.5 |
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| CDS GCA 90 bp | GTGGCTGCAGCGGCTGGCGGCGGCGGCGGCAGCGGCGGCGGCGGCTaGGGCGAATGGGTAGCCCTCATGGTGCACCACGGGGTGGTGGGG | + |
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Preference number: 5 (lower is better) Translates to: VAAAAGGGGGSGGGG*GEWVALMVHHGVVG Trigger: CCCCACCACCCCGTGGTGCACCATGAGGGCTACCCATTCGCCGCAGCCGCCGCCGCCGCTGCCGCCGCCGCCGCCAGCCGCTGCAGCCAC 79% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040104.5 |
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| CDS CCA 90 bp | GCGGCTGGCGGCGGCGGCGGCAGCGGCGGCGGCGGCTGCGGCGAATaGGTAGCCCTCATGGTGCACCACGGGGTGGTGGGGAAAGCCCCC | + |
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Preference number: 5 (lower is better) Translates to: AAGGGGGSGGGGCGE*VALMVHHGVVGKAP Trigger: GGGGGCTTTCCCCACCACCCCGTGGTGCACCATGAGGGCTACCCATTCGCCGCAGCCGCCGCCGCCGCTGCCGCCGCCGCCGCCAGCCGC 79% GC, longest homopolymer 5 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000040104.5 |
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| CDS CCA 90 bp | GCGGCACTCCCCCATAATGGGAGTGGTCCAGGCCCGCGGCACCGCTaGCGTACTCGGGGCTGTAGGACAGGGCCATACTGTAGTCGGGGG | + |
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Preference number: 5 (lower is better) Translates to: AALPHNGSGPGPRHR*RTRGCRTGPYCSRG Trigger: CCCCCGACTACAGTATGGCCCTGTCCTACAGCCCCGAGTACGCCAGCGGTGCCGCGGGCCTGGACCACTCCCATTATGGGGGAGTGCCGC 69% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000040104.5 |
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| CDS-3UTR CAA 90 bp | AGGGCTTTCGGGGAGTCCTGGGTCTGCATCTGGCGCCTTGGCCCCCGGCTCACTCAGCCTGTCCGGCCTTaGGTTTTCTTGTCGTTGCTG | + |
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Preference number: 5 (lower is better) Translates to: RAFGESWVCIWRLGPRLTQPVRP*VFLSLL Trigger: CAGCAACGACAAGAAAACCAAAGGCCGGACAGGCTG...AGTGAGCCGGGGGCCAAGGCGCCAGATGCAGACCCAGGACTCCCCGAAAGCCCT 63% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000040104.5 |
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| CDS-3UTR CAA 90 bp | AAAGAGTTGGGTAAGGAGGCGGGGGACAACGCTGGTGTCTACACAGCCAAGAGGTTCTTGATCTCCGCCTaGAAGGCCTCCGCCTCTCCG | + |
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Preference number: 5 (lower is better) Translates to: KELGKEAGDNAGVYTAKRFLISA*KASASP Trigger: CGGAGAGGCGGAGGCCTTCAAGGCGGAGATCAAGAA...CCTCTTGGCTGTGTAGACACCAGCGTTGTCCCCCGCCTCCTTACCCAACTCTTT 59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000040104.5 |
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| CDS-3UTR CAA 90 bp | AGGGCTTTCGGGGAGTCCTGGGTCTGCATCTGGCGCCTTGGCCCCCGGCTCACTTTGGTTTTCTTGTCGTaGCTGCTCACTGTGCTTTTC | + |
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Preference number: 5 (lower is better) Translates to: RAFGESWVCIWRLGPRLTLVFLS*LLTVLF Trigger: GAAAAGCACAGTGAGCAGCAACGACAAGAAAACCAA...AGTGAGCCGGGGGCCAAGGCGCCAGATGCAGACCCAGGACTCCCCGAAAGCCCT 59% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt. Matches the following 1 transcripts: ENSMUST00000040104.5 |
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| CDS-3UTR CAA 90 bp | CCCCCAGGAATATTTATATCCGAAGGCCGAGTATTAAAAAGATACACTTCACATGTCCTGCGCCGCTCCTaGCGGTTGGCGGTGCCCCGG | + |
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Preference number: 5 (lower is better) Translates to: PPGIFISEGRVLKRYTSHVLRRS*RLAVPR Trigger: CCGGGGCACCGCCAACCGCAAGGAGCGGCGCAGGAC...ATGTGAAGTGTATCTTTTTAATACTCGGCCTTCGGATATAAATATTCCTGGGGG 54% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENSMUST00000040104.5 |
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| CDS GCA 90 bp | CGTGCTGTGGCCAGCCTGTCCGGCCTTTGGTTTTCTTGTCGTTGCTaGTCACTGTGCTTTTCAAGATCTCATTCAGCTCTTTCTTCCTCT | + |
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Preference number: 5 (lower is better) Translates to: RAVASLSGLWFSCRC*SLCFSRSHSALSSS Trigger: AGAGGAAGAAAGAGCTGAATGAGATCTTGAAAAGCACAGTGAGCAGCAACGACAAGAAAACCAAAGGCCGGACAGGCTGGCCACAGCACG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000040104.5 |
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| CDS GCA 90 bp | AGACGTGCTGTGGCCAGCCTGTCCGGCCTTTGGTTTTCTTGTCGTTaGTGCTCACTGTGCTTTTCAAGATCTCATTCAGCTCTTTCTTCC | + |
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Preference number: 5 (lower is better) Translates to: RRAVASLSGLWFSCR*CSLCFSRSHSALSS Trigger: GGAAGAAAGAGCTGAATGAGATCTTGAAAAGCACAGTGAGCAGCAACGACAAGAAAACCAAAGGCCGGACAGGCTGGCCACAGCACGTCT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000040104.5 |
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| CDS-3UTR CAA 90 bp | GAAAGAAGGGGAAGGAAATTGCACATAAATAAACCGGATGATCCAACTGCAAGACCGTTCTGGTCGTCCTaGGCCAGCAGATCCATGAGG | + |
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Preference number: 5 (lower is better) Translates to: ERRGRKLHINKPDDPTARPFWSS*ASRSMR Trigger: CCTCATGGATCTGCTGGCCAAGGACGACCAGAACGG...TCTTGCAGTTGGATCATCCGGTTTATTTATGTGCAATTTCCTTCCCCTTCTTTC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040104.5 |
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| CDS-3UTR CAA 90 bp | CCCCCAGGAATATTTATATCCGAAGGCCGAGTATTAAAAAGATACACTTCACATCGGCCTTTGGTTTTCTaGTCGTTGCTGCTCACTGTG | + |
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Preference number: 5 (lower is better) Translates to: PPGIFISEGRVLKRYTSHRPLVF*SLLLTV Trigger: CACAGTGAGCAGCAACGACAAGAAAACCAAAGGCCG...ATGTGAAGTGTATCTTTTTAATACTCGGCCTTCGGATATAAATATTCCTGGGGG 44% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENSMUST00000040104.5 |
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| CDS-3UTR CAA 90 bp | ACACCTTCAATATTAATTAAATTCCACTTAGTTTTAGAGGACGGAAGCGCACAATTCACGTCGGTCTTCTaGATCTCCGCCTTGAAGGCC | + |
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Preference number: 5 (lower is better) Translates to: TPSILIKFHLVLEDGSAQFTSVF*ISALKA Trigger: GGCCTTCAAGGCGGAGATCAAGAAGACCGACGTGAA...TTGTGCGCTTCCGTCCTCTAAAACTAAGTGGAATTTAATTAATATTGAAGGTGT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040104.5 |
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| CDS CCA 72 bp | GGCGGCGGCGGCAGCGGCGGCGGCGGCTGCGGCGAATaGGTAGCCCTCATGGTGCACCACGGGGTGGTGGGG | + |
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Preference number: 6 (lower is better) Translates to: GGGGSGGGGCGE*VALMVHHGVVG Trigger: CCCCACCACCCCGTGGTGCACCATGAGGGCTACCCATTCGCCGCAGCCGCCGCCGCCGCTGCCGCCGCCGCC 79% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040104.5 |
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| CDS CCA 72 bp | CGTGGAAGTAGGGGTTCTCCTCGTGGCTGCAGCGGCTaGCGGCGGCGGCGGCAGCGGCGGCGGCGGCTGCGG | + |
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Preference number: 6 (lower is better) Translates to: RGSRGSPRGCSG*RRRRQRRRRLR Trigger: CCGCAGCCGCCGCCGCCGCTGCCGCCGCCGCCGCCAGCCGCTGCAGCCACGAGGAGAACCCCTACTTCCACG 79% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040104.5 |
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| CDS CCA 72 bp | CCCCATAATGGGAGTGGTCCAGGCCCGCGGCACCGCTaGCGTACTCGGGGCTGTAGGACAGGGCCATACTGT | + |
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Preference number: 6 (lower is better) Translates to: PHNGSGPGPRHR*RTRGCRTGPYC Trigger: ACAGTATGGCCCTGTCCTACAGCCCCGAGTACGCCAGCGGTGCCGCGGGCCTGGACCACTCCCATTATGGGG 67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000040104.5 |
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| CDS CAA 72 bp | AGGGCCCAGACGTGCTGTGGCCAGCCTGTCCGGCCTTaGGTTTTCTTGTCGTTGCTGCTCACTGTGCTTTTC | + |
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Preference number: 6 (lower is better) Translates to: RAQTCCGQPVRP*VFLSLLLTVLF Trigger: GAAAAGCACAGTGAGCAGCAACGACAAGAAAACCAAAGGCCGGACAGGCTGGCCACAGCACGTCTGGGCCCT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000040104.5 |
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| CDS CAA 72 bp | TTCTCCTCTTTCACGTCGGTCTTCTTGATCTCCGCCTaGAAGGCCTCCGCCTCTCCGTTCTGGTCGTCCTTG | + |
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Preference number: 6 (lower is better) Translates to: FSSFTSVFLISA*KASASPFWSSL Trigger: CAAGGACGACCAGAACGGAGAGGCGGAGGCCTTCAAGGCGGAGATCAAGAAGACCGACGTGAAAGAGGAGAA 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040104.5 |
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| CDS CAA 90 bp | TTGAGCTCCAGGGCCCAGACGTGCTGTGGCCAGCCTGTCCGGCCTTaGGTTTTCTTGTCGTTGCTGCTCACTGTGCTTTTCAAGATCTCA | + |
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Preference number: 6 (lower is better) Translates to: LSSRAQTCCGQPVRP*VFLSLLLTVLFKIS Trigger: TGAGATCTTGAAAAGCACAGTGAGCAGCAACGACAAGAAAACCAAAGGCCGGACAGGCTGGCCACAGCACGTCTGGGCCCTGGAGCTCAA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000040104.5 |
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| CDS CAA 90 bp | AGGGCCCAGACGTGCTGTGGCCAGCCTGTCCGGCCTTTGGTTTTCTaGTCGTTGCTGCTCACTGTGCTTTTCAAGATCTCATTCAGCTCT | + |
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Preference number: 6 (lower is better) Translates to: RAQTCCGQPVRPLVF*SLLLTVLFKISFSS Trigger: AGAGCTGAATGAGATCTTGAAAAGCACAGTGAGCAGCAACGACAAGAAAACCAAAGGCCGGACAGGCTGGCCACAGCACGTCTGGGCCCT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000040104.5 |
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| CDS CAA 90 bp | CAGACGTGCTGTGGCCAGCCTGTCCGGCCTTTGGTTTTCTTGTCGTaGCTGCTCACTGTGCTTTTCAAGATCTCATTCAGCTCTTTCTTC | + |
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Preference number: 6 (lower is better) Translates to: QTCCGQPVRPLVFLS*LLTVLFKISFSSFF Trigger: GAAGAAAGAGCTGAATGAGATCTTGAAAAGCACAGTGAGCAGCAACGACAAGAAAACCAAAGGCCGGACAGGCTGGCCACAGCACGTCTG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000040104.5 |
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| CDS GCA 72 bp | GTGGCCAGCCTGTCCGGCCTTTGGTTTTCTTGTCGTTaGTGCTCACTGTGCTTTTCAAGATCTCATTCAGCT | + |
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Preference number: 6 (lower is better) Translates to: VASLSGLWFSCR*CSLCFSRSHSA Trigger: AGCTGAATGAGATCTTGAAAAGCACAGTGAGCAGCAACGACAAGAAAACCAAAGGCCGGACAGGCTGGCCAC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000040104.5 |
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| CDS CAA 72 bp | TGTGGCCAGCCTGTCCGGCCTTTGGTTTTCTTGTCGTaGCTGCTCACTGTGCTTTTCAAGATCTCATTCAGC | + |
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Preference number: 6 (lower is better) Translates to: CGQPVRPLVFLS*LLTVLFKISFS Trigger: GCTGAATGAGATCTTGAAAAGCACAGTGAGCAGCAACGACAAGAAAACCAAAGGCCGGACAGGCTGGCCACA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000040104.5 |
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