Pregenerated sensors for HAND1 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000037335Ensembl transcript IDs: ENSMUST00000036917.3, ENSMUST00000160392.9
Found 65 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | ACTGGGCGAAACGCGCGCGGGCACCGGGAGACCCGCCGTAGCCGCTaGGTCCTTTCCTCTCCTCTCCACGTAGCCAGGTGGGCCAGCCTC | + |
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Preference number: 1 (lower is better) Translates to: TGRNARGHRETRRSR*VLSSPLHVARWASL Trigger: GAGGCTGGCCCACCTGGCTACGTGGAGAGGAGAGGAAAGGACGCAGCGGCTACGGCGGGTCTCCCGGTGCCCGCGCGCGTTTCGCCCAGT 71% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000036917.3 ENSMUST00000160392.9 |
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| 3UTR GCA 90 bp | TTAACAAATTCAAATGACATTGCACGTGCGATCCTAGTGGGTAGTTaGAACCGCCGACCCTCCGGTGCTCCGCAGAGACTGGGCGAAACG | + |
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Preference number: 1 (lower is better) Translates to: LTNSNDIARAILVGS*NRRPSGAPQRLGET Trigger: CGTTTCGCCCAGTCTCTGCGGAGCACCGGAGGGTCGGCGGTTGCAACTACCCACTAGGATCGCACGTGCAATGTCATTTGAATTTGTTAA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000036917.3 ENSMUST00000160392.9 |
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| 3UTR CAA 90 bp | GAAGGGGACGAGAGAGCGAGCCAGAGAGCGGCGCGACCATGGCTTTaGGGGTTGAGTTCCACCCAGATGGGTTGGAAGGGTGTGTCTTCG | + |
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Preference number: 2 (lower is better) Translates to: EGDERASQRAARPWL*GLSSTQMGWKGVSS Trigger: CGAAGACACACCCTTCCAACCCATCTGGGTGGAACTCAACCCCAAAAGCCATGGTCGCGCCGCTCTCTGGCTCGCTCTCTCGTCCCCTTC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000036917.3 ENSMUST00000160392.9 |
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| 3UTR CAA 90 bp | TTGGAAGGGTGTGTCTTCGGGGGCTTGGTCTTCTCCAGTCCCATCTaGAGTCGAGCCTTCAAGAGCCGCCCTCGGCGGGAAGTGAACATA | + |
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Preference number: 2 (lower is better) Translates to: LEGCVFGGLVFSSPI*SRAFKSRPRREVNI Trigger: TATGTTCACTTCCCGCCGAGGGCGGCTCTTGAAGGCTCGACTCAAGATGGGACTGGAGAAGACCAAGCCCCCGAAGACACACCCTTCCAA 58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000036917.3 ENSMUST00000160392.9 |
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| 3UTR-3UTR TCA 90 bp | GACGCAGAGCCAAGAAGGGGACGAGAGAGCGAGCCAGAGAGCGGCGCGACCATGGCCCTCGGCGGGAAGTaGACATATATAAAAATTTCT | + |
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Preference number: 2 (lower is better) Translates to: DAEPRRGRESEPESGATMALGGK*TYIKIS Trigger: AGAAATTTTTATATATGTTCACTTCCCGCCGAGGGC...CATGGTCGCGCCGCTCTCTGGCTCGCTCTCTCGTCCCCTTCTTGGCTCTGCGTC 57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000036917.3 ENSMUST00000160392.9 |
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| 3UTR-3UTR TCA 90 bp | CGCAGAGCCAAGAAGGGGACGAGAGAGCGAGCCAGAGAGCGGCGCGACCATGGCATTAACAAATTCAAATaGCATTGCACGTGCGATCCT | + |
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Preference number: 2 (lower is better) Translates to: RRAKKGTRERARERRDHGINKFK*HCTCDP Trigger: AGGATCGCACGTGCAATGTCATTTGAATTTGTTAAT...GCCATGGTCGCGCCGCTCTCTGGCTCGCTCTCTCGTCCCCTTCTTGGCTCTGCG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000036917.3 ENSMUST00000160392.9 |
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| 3UTR-3UTR TCA 90 bp | TTAGAAACTACCAATTACTCTTATTGCATTTTAACTCGAGAAGGCATCAGGGTATCTCCAGTCCCATCTTaGGTCGAGCCTTCAAGAGCC | + |
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Preference number: 2 (lower is better) Translates to: LETTNYSYCILTREGIRVSPVPS*VEPSRA Trigger: GGCTCTTGAAGGCTCGACTCAAGATGGGACTGGAGA...TACCCTGATGCCTTCTCGAGTTAAAATGCAATAAGAGTAATTGGTAGTTTCTAA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000036917.3 ENSMUST00000160392.9 |
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| 3UTR-3UTR TCA 90 bp | CAGTCTTCCTGGTTAGAAACTACCAATTACTCTTATTGCATTTTAACTCGAGAACATGGCTTTTGGGGTTaGGTTCCACCCAGATGGGTT | + |
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Preference number: 2 (lower is better) Translates to: QSSWLETTNYSYCILTREHGFWG*VPPRWV Trigger: AACCCATCTGGGTGGAACTCAACCCCAAAAGCCATG...TTCTCGAGTTAAAATGCAATAAGAGTAATTGGTAGTTTCTAACCAGGAAGACTG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000036917.3 ENSMUST00000160392.9 |
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| 3UTR-3UTR TCA 90 bp | GGAGATGTATACCTGAGAGCAACAGGCATGATAGGTAGTTTAAATACGTTACAAATTAACAAATTCAAATaGCATTGCACGTGCGATCCT | + |
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Preference number: 2 (lower is better) Translates to: GDVYLRATGMIGSLNTLQINKFK*HCTCDP Trigger: AGGATCGCACGTGCAATGTCATTTGAATTTGTTAAT...TTGTAACGTATTTAAACTACCTATCATGCCTGTTGCTCTCAGGTATACATCTCC 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000036917.3 ENSMUST00000160392.9 |
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| 3UTR GCA 72 bp | AACGCGCGCGGGCACCGGGAGACCCGCCGTAGCCGCTaGGTCCTTTCCTCTCCTCTCCACGTAGCCAGGTGG | + |
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Preference number: 3 (lower is better) Translates to: NARGHRETRRSR*VLSSPLHVARW Trigger: CCACCTGGCTACGTGGAGAGGAGAGGAAAGGACGCAGCGGCTACGGCGGGTCTCCCGGTGCCCGCGCGCGTT 71% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000036917.3 ENSMUST00000160392.9 |
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| 3UTR CCA 72 bp | CGCTGCGTCCTTTCCTCTCCTCTCCACGTAGCCAGGTaGGCCAGCCTCGGCCGGGTTCTCCGGCGGCGTTGG | + |
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Preference number: 3 (lower is better) Translates to: RCVLSSPLHVAR*ASLGRVLRRRW Trigger: CCAACGCCGCCGGAGAACCCGGCCGAGGCTGGCCCACCTGGCTACGTGGAGAGGAGAGGAAAGGACGCAGCG 71% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000036917.3 ENSMUST00000160392.9 |
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| 3UTR TCA 72 bp | GTGTCTTCGGGGGCTTGGTCTTCTCCAGTCCCATCTTaGGTCGAGCCTTCAAGAGCCGCCCTCGGCGGGAAG | + |
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Preference number: 3 (lower is better) Translates to: VSSGAWSSPVPS*VEPSRAALGGK Trigger: CTTCCCGCCGAGGGCGGCTCTTGAAGGCTCGACTCAAGATGGGACTGGAGAAGACCAAGCCCCCGAAGACAC 62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000036917.3 ENSMUST00000160392.9 |
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| 3UTR TCA 72 bp | CGAGCCAGAGAGCGGCGCGACCATGGCTTTTGGGGTTaGGTTCCACCCAGATGGGTTGGAAGGGTGTGTCTT | + |
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Preference number: 3 (lower is better) Translates to: RARERRDHGFWG*VPPRWVGRVCL Trigger: AAGACACACCCTTCCAACCCATCTGGGTGGAACTCAACCCCAAAAGCCATGGTCGCGCCGCTCTCTGGCTCG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000036917.3 ENSMUST00000160392.9 |
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| 3UTR-3UTR CAA 90 bp | GAGCCAGAGAGCGGCGCGACCATGGCTTTTGGGGTTGAGTTCCACCCAGATGGGTTCTCCAGTCCCATCTaGAGTCGAGCCTTCAAGAGC | + |
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Preference number: 3 (lower is better) Translates to: EPESGATMAFGVEFHPDGFSSPI*SRAFKS Trigger: GCTCTTGAAGGCTCGACTCAAGATGGGACTGGAGAA...CCCATCTGGGTGGAACTCAACCCCAAAAGCCATGGTCGCGCCGCTCTCTGGCTC 59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000036917.3 ENSMUST00000160392.9 |
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| 3UTR GCA 72 bp | TCAAATGACATTGCACGTGCGATCCTAGTGGGTAGTTaGAACCGCCGACCCTCCGGTGCTCCGCAGAGACTG | + |
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Preference number: 3 (lower is better) Translates to: SNDIARAILVGS*NRRPSGAPQRL Trigger: CAGTCTCTGCGGAGCACCGGAGGGTCGGCGGTTGCAACTACCCACTAGGATCGCACGTGCAATGTCATTTGA 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000036917.3 ENSMUST00000160392.9 |
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| 3UTR-3UTR CAA 90 bp | GGAGATGTATACCTGAGAGCAACAGGCATGATAGGTAGTTTAAATACGTTACAAAGGGAAAGATTTCCCTaGGAAAGCAGAGGTGCTGCG | + |
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Preference number: 3 (lower is better) Translates to: GDVYLRATGMIGSLNTLQRERFP*ESRGAA Trigger: CGCAGCACCTCTGCTTTCCAAGGGAAATCTTTCCCT...TTGTAACGTATTTAAACTACCTATCATGCCTGTTGCTCTCAGGTATACATCTCC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000036917.3 ENSMUST00000160392.9 |
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| 3UTR CCA 72 bp | CTCAGGAGAGGTCAACCCAGGCAGCGTCAGTCTTCCTaGTTAGAAACTACCAATTACTCTTATTGCATTTTA | + |
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Preference number: 3 (lower is better) Translates to: LRRGQPRQRQSS*LETTNYSYCIL Trigger: TAAAATGCAATAAGAGTAATTGGTAGTTTCTAACCAGGAAGACTGACGCTGCCTGGGTTGACCTCTCCTGAG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000036917.3 ENSMUST00000160392.9 |
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| 3UTR GCA 72 bp | CAGTCTTCCTGGTTAGAAACTACCAATTACTCTTATTaGATTTTAACTCGAGAAGGCATCAGGGTACTGACG | + |
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Preference number: 3 (lower is better) Translates to: QSSWLETTNYSY*ILTREGIRVLT Trigger: CGTCAGTACCCTGATGCCTTCTCGAGTTAAAATGCAATAAGAGTAATTGGTAGTTTCTAACCAGGAAGACTG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000036917.3 ENSMUST00000160392.9 |
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| CDS-3UTR TCA 90 bp | CGTCCTTTCCTCTCCTCTCCACGTAGCCAGGTGGGCCAGCCTCGGCCGGGTTCTAGCGCCCAGACTTGCTaGGGCCAGCCGGTGCGCCCT | + |
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Preference number: 4 (lower is better) Translates to: RPFLSSPRSQVGQPRPGSSAQTC*GQPVRP Trigger: AGGGCGCACCGGCTGGCCTCAGCAAGTCTGGGCGCT...AGAACCCGGCCGAGGCTGGCCCACCTGGCTACGTGGAGAGGAGAGGAAAGGACG 69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000036917.3 ENSMUST00000160392.9 |
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| CDS-3UTR GCA 90 bp | CCGACCCTCCGGTGCTCCGCAGAGACTGGGCGAAACGCGCGCGGGCACCGGGAGACTCCCTTTTCCGCTTaGTTTCGCGACCACCATCCG | + |
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Preference number: 4 (lower is better) Translates to: PTLRCSAETGRNARGHRETPFSA*FRDHHP Trigger: CGGATGGTGGTCGCGAAAGCAAGCGGAAAAGGGAGT...CTCCCGGTGCCCGCGCGCGTTTCGCCCAGTCTCTGCGGAGCACCGGAGGGTCGG 68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000036917.3 ENSMUST00000160392.9 |
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| CDS-3UTR CCA 90 bp | GACGCAGAGCCAAGAAGGGGACGAGAGAGCGAGCCAGAGAGCGGCGCGACCATGAGCCTCCAGCCGACCTaGGCTCTGACTCGGCCTGGC | + |
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Preference number: 4 (lower is better) Translates to: DAEPRRGRESEPESGATMSLQPT*ALTRPG Trigger: GCCAGGCCGAGTCAGAGCCCAGGTCGGCTGGAGGCT...CATGGTCGCGCCGCTCTCTGGCTCGCTCTCTCGTCCCCTTCTTGGCTCTGCGTC 68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000036917.3 ENSMUST00000160392.9 |
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| CDS-3UTR CCA 90 bp | CGCAGAGCCAAGAAGGGGACGAGAGAGCGAGCCAGAGAGCGGCGCGACCATGGCAGGGTTCGTGGAGCATaGGGTGCGGCGGGTGTGAGT | + |
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Preference number: 4 (lower is better) Translates to: RRAKKGTRERARERRDHGRVRGA*GAAGVS Trigger: ACTCACACCCGCCGCACCCCATGCTCCACGAACCCT...GCCATGGTCGCGCCGCTCTCTGGCTCGCTCTCTCGTCCCCTTCTTGGCTCTGCG 67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000036917.3 ENSMUST00000160392.9 |
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| CDS-3UTR CCA 90 bp | CCCTCCGGTGCTCCGCAGAGACTGGGCGAAACGCGCGCGGGCACCGGGAGACCCCTGCTTGTGCATCCTTaGCCAGCACGTCCATCAAGT | + |
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Preference number: 4 (lower is better) Translates to: PSGAPQRLGETRAGTGRPLLVHP*PARPSS Trigger: ACTTGATGGACGTGCTGGCCAAGGATGCACAAGCAG...GGGTCTCCCGGTGCCCGCGCGCGTTTCGCCCAGTCTCTGCGGAGCACCGGAGGG 67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000036917.3 ENSMUST00000160392.9 |
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| CDS-3UTR TCA 90 bp | GAGCCAAGAAGGGGACGAGAGAGCGAGCCAGAGAGCGGCGCGACCATGGCTTTTAGCCGACCTGGGCTCTaGCTCGGCCTGGCATCGGGA | + |
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Preference number: 4 (lower is better) Translates to: EPRRGRESEPESGATMAFSRPGL*LGLASG Trigger: TCCCGATGCCAGGCCGAGTCAGAGCCCAGGTCGGCT...AAAAGCCATGGTCGCGCCGCTCTCTGGCTCGCTCTCTCGTCCCCTTCTTGGCTC 66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000036917.3 ENSMUST00000160392.9 |
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| CDS-3UTR TCA 90 bp | GAGCCAGAGAGCGGCGCGACCATGGCTTTTGGGGTTGAGTTCCACCCAGATGGGAGCCGACCTGGGCTCTaGCTCGGCCTGGCATCGGGA | + |
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Preference number: 4 (lower is better) Translates to: EPESGATMAFGVEFHPDGSRPGL*LGLASG Trigger: TCCCGATGCCAGGCCGAGTCAGAGCCCAGGTCGGCT...CCCATCTGGGTGGAACTCAACCCCAAAAGCCATGGTCGCGCCGCTCTCTGGCTC 66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000036917.3 ENSMUST00000160392.9 |
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| CDS-3UTR GCA 90 bp | GAGCCAGAGAGCGGCGCGACCATGGCTTTTGGGGTTGAGTTCCACCCAGATGGGGGCAGCCGCTGCTACTaGGGTGGTAGGTGGTGGCCC | + |
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Preference number: 4 (lower is better) Translates to: EPESGATMAFGVEFHPDGGSRCY*GGRWWP Trigger: GGGCCACCACCTACCACCGCAGTAGCAGCGGCTGCC...CCCATCTGGGTGGAACTCAACCCCAAAAGCCATGGTCGCGCCGCTCTCTGGCTC 66% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 2 transcripts: ENSMUST00000036917.3 ENSMUST00000160392.9 |
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| CDS-3UTR CCA 90 bp | GAGCCAAGAAGGGGACGAGAGAGCGAGCCAGAGAGCGGCGCGACCATGGCTTTTAACAGGAAGGGTTCGTaGAGCATGGGGTGCGGCGGG | + |
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Preference number: 4 (lower is better) Translates to: EPRRGRESEPESGATMAFNRKGS*SMGCGG Trigger: CCCGCCGCACCCCATGCTCCACGAACCCTTCCTGTT...AAAAGCCATGGTCGCGCCGCTCTCTGGCTCGCTCTCTCGTCCCCTTCTTGGCTC 63% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000036917.3 ENSMUST00000160392.9 |
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| CDS-3UTR TCA 90 bp | CGTCCTTTCCTCTCCTCTCCACGTAGCCAGGTGGGCCAGCCTCGGCCGGGTTCTCTCCTTCTTGGGTCCTaGGCCTTTTCGTTTGGGCAG | + |
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Preference number: 4 (lower is better) Translates to: RPFLSSPRSQVGQPRPGSLLLGS*AFSFGQ Trigger: CTGCCCAAACGAAAAGGCTCAGGACCCAAGAAGGAG...AGAACCCGGCCGAGGCTGGCCCACCTGGCTACGTGGAGAGGAGAGGAAAGGACG 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000036917.3 ENSMUST00000160392.9 |
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| 3UTR CAA 72 bp | TGTGTCTTCGGGGGCTTGGTCTTCTCCAGTCCCATCTaGAGTCGAGCCTTCAAGAGCCGCCCTCGGCGGGAA | + |
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Preference number: 4 (lower is better) Translates to: CVFGGLVFSSPI*SRAFKSRPRRE Trigger: TTCCCGCCGAGGGCGGCTCTTGAAGGCTCGACTCAAGATGGGACTGGAGAAGACCAAGCCCCCGAAGACACA 61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000036917.3 ENSMUST00000160392.9 |
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| 3UTR CAA 72 bp | GCGAGCCAGAGAGCGGCGCGACCATGGCTTTTGGGGTaGAGTTCCACCCAGATGGGTTGGAAGGGTGTGTCT | + |
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Preference number: 4 (lower is better) Translates to: ASQRAARPWLLG*SSTQMGWKGVS Trigger: AGACACACCCTTCCAACCCATCTGGGTGGAACTCAACCCCAAAAGCCATGGTCGCGCCGCTCTCTGGCTCGC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000036917.3 ENSMUST00000160392.9 |
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| 3UTR CAA 72 bp | GAGAGAGCGAGCCAGAGAGCGGCGCGACCATGGCTTTaGGGGTTGAGTTCCACCCAGATGGGTTGGAAGGGT | + |
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Preference number: 4 (lower is better) Translates to: ERASQRAARPWL*GLSSTQMGWKG Trigger: ACCCTTCCAACCCATCTGGGTGGAACTCAACCCCAAAAGCCATGGTCGCGCCGCTCTCTGGCTCGCTCTCTC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000036917.3 ENSMUST00000160392.9 |
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| CDS-3UTR GCA 90 bp | GAGCCAAGAAGGGGACGAGAGAGCGAGCCAGAGAGCGGCGCGACCATGGCTTTTACTCCCTTTTCCGCTTaGTTTCGCGACCACCATCCG | + |
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Preference number: 4 (lower is better) Translates to: EPRRGRESEPESGATMAFTPFSA*FRDHHP Trigger: CGGATGGTGGTCGCGAAAGCAAGCGGAAAAGGGAGT...AAAAGCCATGGTCGCGCCGCTCTCTGGCTCGCTCTCTCGTCCCCTTCTTGGCTC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000036917.3 ENSMUST00000160392.9 |
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| CDS-3UTR GCA 90 bp | GAGCCAAGAAGGGGACGAGAGAGCGAGCCAGAGAGCGGCGCGACCATGGCTTTTATGATGGTGATGATGTaGGTAGCTGCCCACGAGGTT | + |
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Preference number: 4 (lower is better) Translates to: EPRRGRESEPESGATMAFMMVMM*VAAHEV Trigger: AACCTCGTGGGCAGCTACGCACATCATCACCATCAT...AAAAGCCATGGTCGCGCCGCTCTCTGGCTCGCTCTCTCGTCCCCTTCTTGGCTC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000036917.3 ENSMUST00000160392.9 |
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| CDS-3UTR GCA 90 bp | GGGGAGGGAAGGGAAGGGAAAGGAAGGGAAAGATTTCCCTTGGAAAGCAGAGGTGGCCTCGGGGTCACCTaGTTGTGCATCCTTGGCCAG | + |
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Preference number: 4 (lower is better) Translates to: GEGREGKGRERFPLESRGGLGVT*LCILGQ Trigger: CTGGCCAAGGATGCACAAGCAGGTGACCCCGAGGCC...ACCTCTGCTTTCCAAGGGAAATCTTTCCCTTCCTTTCCCTTCCCTTCCCTCCCC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000036917.3 ENSMUST00000160392.9 |
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| CDS-3UTR CCA 90 bp | GGGGAGGGAAGGGAAGGGAAAGGAAGGGAAAGATTTCCCTTGGAAAGCAGAGGTAACAGGAAGGGTTCGTaGAGCATGGGGTGCGGCGGG | + |
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Preference number: 4 (lower is better) Translates to: GEGREGKGRERFPLESRGNRKGS*SMGCGG Trigger: CCCGCCGCACCCCATGCTCCACGAACCCTTCCTGTT...ACCTCTGCTTTCCAAGGGAAATCTTTCCCTTCCTTTCCCTTCCCTTCCCTCCCC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000036917.3 ENSMUST00000160392.9 |
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| CDS-3UTR TCA 90 bp | GGGGAGGGAAGGGAAGGGAAAGGAAGGGAAAGATTTCCCTTGGAAAGCAGAGGTCTCCTTCTTGGGTCCTaGGCCTTTTCGTTTGGGCAG | + |
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Preference number: 4 (lower is better) Translates to: GEGREGKGRERFPLESRGLLLGS*AFSFGQ Trigger: CTGCCCAAACGAAAAGGCTCAGGACCCAAGAAGGAG...ACCTCTGCTTTCCAAGGGAAATCTTTCCCTTCCTTTCCCTTCCCTTCCCTCCCC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000036917.3 ENSMUST00000160392.9 |
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| CDS-3UTR GCA 90 bp | TTAGAAACTACCAATTACTCTTATTGCATTTTAACTCGAGAAGGCATCAGGGTAGGCAGCCGCTGCTACTaGGGTGGTAGGTGGTGGCCC | + |
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Preference number: 4 (lower is better) Translates to: LETTNYSYCILTREGIRVGSRCY*GGRWWP Trigger: GGGCCACCACCTACCACCGCAGTAGCAGCGGCTGCC...TACCCTGATGCCTTCTCGAGTTAAAATGCAATAAGAGTAATTGGTAGTTTCTAA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000036917.3 ENSMUST00000160392.9 |
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| CDS-3UTR CCA 90 bp | CAGTCTTCCTGGTTAGAAACTACCAATTACTCTTATTGCATTTTAACTCGAGAAAGCCTCCAGCCGACCTaGGCTCTGACTCGGCCTGGC | + |
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Preference number: 4 (lower is better) Translates to: QSSWLETTNYSYCILTRESLQPT*ALTRPG Trigger: GCCAGGCCGAGTCAGAGCCCAGGTCGGCTGGAGGCT...TTCTCGAGTTAAAATGCAATAAGAGTAATTGGTAGTTTCTAACCAGGAAGACTG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000036917.3 ENSMUST00000160392.9 |
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| CDS-3UTR CCA 90 bp | TTAGAAACTACCAATTACTCTTATTGCATTTTAACTCGAGAAGGCATCAGGGTATGCGGTGGTAGGTGGTaGCCCGCCGGCAGGGAAATC | + |
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Preference number: 4 (lower is better) Translates to: LETTNYSYCILTREGIRVCGGRW*PAGREI Trigger: GATTTCCCTGCCGGCGGGCCACCACCTACCACCGCA...TACCCTGATGCCTTCTCGAGTTAAAATGCAATAAGAGTAATTGGTAGTTTCTAA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000036917.3 ENSMUST00000160392.9 |
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| CDS-3UTR CCA 90 bp | TTAGAAACTACCAATTACTCTTATTGCATTTTAACTCGAGAAGGCATCAGGGTAAGGGTTCGTGGAGCATaGGGTGCGGCGGGTGTGAGT | + |
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Preference number: 4 (lower is better) Translates to: LETTNYSYCILTREGIRVRVRGA*GAAGVS Trigger: ACTCACACCCGCCGCACCCCATGCTCCACGAACCCT...TACCCTGATGCCTTCTCGAGTTAAAATGCAATAAGAGTAATTGGTAGTTTCTAA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000036917.3 ENSMUST00000160392.9 |
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| CDS-3UTR GCA 90 bp | TTAGAAACTACCAATTACTCTTATTGCATTTTAACTCGAGAAGGCATCAGGGTAATGATGGTGATGATGTaGGTAGCTGCCCACGAGGTT | + |
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Preference number: 4 (lower is better) Translates to: LETTNYSYCILTREGIRVMMVMM*VAAHEV Trigger: AACCTCGTGGGCAGCTACGCACATCATCACCATCAT...TACCCTGATGCCTTCTCGAGTTAAAATGCAATAAGAGTAATTGGTAGTTTCTAA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000036917.3 ENSMUST00000160392.9 |
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| 3UTR CAA 72 bp | TCAGTCTTCCTGGTTAGAAACTACCAATTACTCTTATaGCATTTTAACTCGAGAAGGCATCAGGGTACTGAC | + |
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Preference number: 4 (lower is better) Translates to: SVFLVRNYQLLL*HFNSRRHQGTD Trigger: GTCAGTACCCTGATGCCTTCTCGAGTTAAAATGCAATAAGAGTAATTGGTAGTTTCTAACCAGGAAGACTGA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000036917.3 ENSMUST00000160392.9 |
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| CDS GCA 90 bp | GCTCTGACTCGGCCTGGCATCGGGACCATAGGCAGCCGCTGCTACTaGGGTGGTAGGTGGTGGCCCGCCGGCAGGGAAATCTGGGGCAGC | + |
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Preference number: 5 (lower is better) Translates to: ALTRPGIGTIGSRCY*GGRWWPAGREIWGS Trigger: GCTGCCCCAGATTTCCCTGCCGGCGGGCCACCACCTACCACCGCAGTAGCAGCGGCTGCCTATGGTCCCGATGCCAGGCCGAGTCAGAGC 69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000036917.3 ENSMUST00000160392.9 |
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| CDS CCA 90 bp | CCTGGCATCGGGACCATAGGCAGCCGCTGCTACTGCGGTGGTAGGTaGTGGCCCGCCGGCAGGGAAATCTGGGGCAGCATCAGCCGGGCT | + |
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Preference number: 5 (lower is better) Translates to: PGIGTIGSRCYCGGR*WPAGREIWGSISRA Trigger: AGCCCGGCTGATGCTGCCCCAGATTTCCCTGCCGGCGGGCCACCACCTACCACCGCAGTAGCAGCGGCTGCCTATGGTCCCGATGCCAGG 69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000036917.3 ENSMUST00000160392.9 |
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| CDS-3UTR CAA 90 bp | CCGACCCTCCGGTGCTCCGCAGAGACTGGGCGAAACGCGCGCGGGCACCGGGAGCCTGCTTGTGCATCCTaGGCCAGCACGTCCATCAAG | + |
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Preference number: 5 (lower is better) Translates to: PTLRCSAETGRNARGHREPACAS*ASTSIK Trigger: CTTGATGGACGTGCTGGCCAAGGATGCACAAGCAGG...CTCCCGGTGCCCGCGCGCGTTTCGCCCAGTCTCTGCGGAGCACCGGAGGGTCGG 69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000036917.3 ENSMUST00000160392.9 |
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| CDS GCA 90 bp | ACCTGGGCTCTGACTCGGCCTGGCATCGGGACCATAGGCAGCCGCTaGTACTGCGGTGGTAGGTGGTGGCCCGCCGGCAGGGAAATCTGG | + |
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Preference number: 5 (lower is better) Translates to: TWALTRPGIGTIGSR*YCGGRWWPAGREIW Trigger: CCAGATTTCCCTGCCGGCGGGCCACCACCTACCACCGCAGTAGCAGCGGCTGCCTATGGTCCCGATGCCAGGCCGAGTCAGAGCCCAGGT 68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000036917.3 ENSMUST00000160392.9 |
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| CDS-3UTR CAA 90 bp | CCCTCCGGTGCTCCGCAGAGACTGGGCGAAACGCGCGCGGGCACCGGGAGACCCAACTCCCTTTTCCGCTaGCTTTCGCGACCACCATCC | + |
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Preference number: 5 (lower is better) Translates to: PSGAPQRLGETRAGTGRPNSLFR*LSRPPS Trigger: GGATGGTGGTCGCGAAAGCAAGCGGAAAAGGGAGTT...GGGTCTCCCGGTGCCCGCGCGCGTTTCGCCCAGTCTCTGCGGAGCACCGGAGGG 68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000036917.3 ENSMUST00000160392.9 |
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| CDS CCA 90 bp | GCCTTTTCGTTTGGGCAGGCGGCTTCCAAGAGCCTCCAGCCGACCTaGGCTCTGACTCGGCCTGGCATCGGGACCATAGGCAGCCGCTGC | + |
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Preference number: 5 (lower is better) Translates to: AFSFGQAASKSLQPT*ALTRPGIGTIGSRC Trigger: GCAGCGGCTGCCTATGGTCCCGATGCCAGGCCGAGTCAGAGCCCAGGTCGGCTGGAGGCTCTTGGAAGCCGCCTGCCCAAACGAAAAGGC 67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000036917.3 ENSMUST00000160392.9 |
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| CDS-3UTR CAA 90 bp | CGCAGAGCCAAGAAGGGGACGAGAGAGCGAGCCAGAGAGCGGCGCGACCATGGCCTCGGGGTCACCTGCTaGTGCATCCTTGGCCAGCAC | + |
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Preference number: 5 (lower is better) Translates to: RRAKKGTRERARERRDHGLGVTC*CILGQH Trigger: GTGCTGGCCAAGGATGCACAAGCAGGTGACCCCGAG...GCCATGGTCGCGCCGCTCTCTGGCTCGCTCTCTCGTCCCCTTCTTGGCTCTGCG 67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000036917.3 ENSMUST00000160392.9 |
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| CDS TCA 90 bp | CTCTTCTCGCCGGGCCCCGAGGCAGGAGGGAAGCTTTCGGGCTGCTaGGGCAACTCCCTTTTCCGCTTGCTTTCGCGACCACCATCCGTC | + |
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Preference number: 5 (lower is better) Translates to: LFSPGPEAGGKLSGC*GNSLFRLLSRPPSV Trigger: GACGGATGGTGGTCGCGAAAGCAAGCGGAAAAGGGAGTTGCCTCAGCAGCCCGAAAGCTTCCCTCCTGCCTCGGGGCCCGGCGAGAAGAG 64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000036917.3 ENSMUST00000160392.9 |
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| CDS-3UTR CAA 90 bp | GAGCCAAGAAGGGGACGAGAGAGCGAGCCAGAGAGCGGCGCGACCATGGCTTTTCTCGGGGTCACCTGCTaGTGCATCCTTGGCCAGCAC | + |
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Preference number: 5 (lower is better) Translates to: EPRRGRESEPESGATMAFLGVTC*CILGQH Trigger: GTGCTGGCCAAGGATGCACAAGCAGGTGACCCCGAG...AAAAGCCATGGTCGCGCCGCTCTCTGGCTCGCTCTCTCGTCCCCTTCTTGGCTC 63% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000036917.3 ENSMUST00000160392.9 |
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| CDS-3UTR CAA 90 bp | CGCCGTAGCCGCTGCGTCCTTTCCTCTCCTCTCCACGTAGCCAGGTGGGCCAGCTTTTTGAGTTCAGCCTaGAAGGCCTCGGGGTCACCT | + |
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Preference number: 5 (lower is better) Translates to: RRSRCVLSSPLHVARWASFLSSA*KASGSP Trigger: AGGTGACCCCGAGGCCTTCAAGGCTGAACTCAAAAA...GCTGGCCCACCTGGCTACGTGGAGAGGAGAGGAAAGGACGCAGCGGCTACGGCG 62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000036917.3 ENSMUST00000160392.9 |
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| CDS-3UTR CAA 90 bp | CGTCCTTTCCTCTCCTCTCCACGTAGCCAGGTGGGCCAGCCTCGGCCGGGTTCTCCACCATCCGTCTTTTaGAGTTCAGCCTTGAAGGCC | + |
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Preference number: 5 (lower is better) Translates to: RPFLSSPRSQVGQPRPGSPPSVF*SSALKA Trigger: GGCCTTCAAGGCTGAACTCAAAAAGACGGATGGTGG...AGAACCCGGCCGAGGCTGGCCCACCTGGCTACGTGGAGAGGAGAGGAAAGGACG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000036917.3 ENSMUST00000160392.9 |
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| CDS TCA 90 bp | CGCGCTGTTAATGCTCTCTGTGCGTCTCCTCTCCTTCTTGGGTCCTaGGCCTTTTCGTTTGGGCAGGCGGCTTCCAAGAGCCTCCAGCCG | + |
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Preference number: 5 (lower is better) Translates to: RAVNALCASPLLLGS*AFSFGQAASKSLQP Trigger: CGGCTGGAGGCTCTTGGAAGCCGCCTGCCCAAACGAAAAGGCTCAGGACCCAAGAAGGAGAGGAGACGCACAGAGAGCATTAACAGCGCG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000036917.3 ENSMUST00000160392.9 |
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| CDS-3UTR CAA 90 bp | GAGCCAAGAAGGGGACGAGAGAGCGAGCCAGAGAGCGGCGCGACCATGGCTTTTCCACCATCCGTCTTTTaGAGTTCAGCCTTGAAGGCC | + |
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Preference number: 5 (lower is better) Translates to: EPRRGRESEPESGATMAFPPSVF*SSALKA Trigger: GGCCTTCAAGGCTGAACTCAAAAAGACGGATGGTGG...AAAAGCCATGGTCGCGCCGCTCTCTGGCTCGCTCTCTCGTCCCCTTCTTGGCTC 59% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000036917.3 ENSMUST00000160392.9 |
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| CDS-3UTR CAA 90 bp | GGAGATGTATACCTGAGAGCAACAGGCATGATAGGTAGTTTAAATACGTTACAACCTGCTTGTGCATCCTaGGCCAGCACGTCCATCAAG | + |
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Preference number: 5 (lower is better) Translates to: GDVYLRATGMIGSLNTLQPACAS*ASTSIK Trigger: CTTGATGGACGTGCTGGCCAAGGATGCACAAGCAGG...TTGTAACGTATTTAAACTACCTATCATGCCTGTTGCTCTCAGGTATACATCTCC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000036917.3 ENSMUST00000160392.9 |
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| CDS-3UTR CAA 90 bp | GGAGATGTATACCTGAGAGCAACAGGCATGATAGGTAGTTTAAATACGTTACAAAACTCCCTTTTCCGCTaGCTTTCGCGACCACCATCC | + |
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Preference number: 5 (lower is better) Translates to: GDVYLRATGMIGSLNTLQNSLFR*LSRPPS Trigger: GGATGGTGGTCGCGAAAGCAAGCGGAAAAGGGAGTT...TTGTAACGTATTTAAACTACCTATCATGCCTGTTGCTCTCAGGTATACATCTCC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000036917.3 ENSMUST00000160392.9 |
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| CDS CCA 72 bp | GGGACCATAGGCAGCCGCTGCTACTGCGGTGGTAGGTaGTGGCCCGCCGGCAGGGAAATCTGGGGCAGCATC | + |
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Preference number: 6 (lower is better) Translates to: GTIGSRCYCGGR*WPAGREIWGSI Trigger: GATGCTGCCCCAGATTTCCCTGCCGGCGGGCCACCACCTACCACCGCAGTAGCAGCGGCTGCCTATGGTCCC 68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000036917.3 ENSMUST00000160392.9 |
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| CDS CCA 72 bp | CAAGAGCCTCCAGCCGACCTGGGCTCTGACTCGGCCTaGCATCGGGACCATAGGCAGCCGCTGCTACTGCGG | + |
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Preference number: 6 (lower is better) Translates to: QEPPADLGSDSA*HRDHRQPLLLR Trigger: CCGCAGTAGCAGCGGCTGCCTATGGTCCCGATGCCAGGCCGAGTCAGAGCCCAGGTCGGCTGGAGGCTCTTG 68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000036917.3 ENSMUST00000160392.9 |
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| CDS CCA 72 bp | ACCATAGGCAGCCGCTGCTACTGCGGTGGTAGGTGGTaGCCCGCCGGCAGGGAAATCTGGGGCAGCATCAGC | + |
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Preference number: 6 (lower is better) Translates to: TIGSRCYCGGRW*PAGREIWGSIS Trigger: GCTGATGCTGCCCCAGATTTCCCTGCCGGCGGGCCACCACCTACCACCGCAGTAGCAGCGGCTGCCTATGGT 67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000036917.3 ENSMUST00000160392.9 |
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| CDS CCA 72 bp | TTTGGGCAGGCGGCTTCCAAGAGCCTCCAGCCGACCTaGGCTCTGACTCGGCCTGGCATCGGGACCATAGGC | + |
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Preference number: 6 (lower is better) Translates to: FGQAASKSLQPT*ALTRPGIGTIG Trigger: GCCTATGGTCCCGATGCCAGGCCGAGTCAGAGCCCAGGTCGGCTGGAGGCTCTTGGAAGCCGCCTGCCCAAA 67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000036917.3 ENSMUST00000160392.9 |
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| CDS TCA 72 bp | CCGGGCCCCGAGGCAGGAGGGAAGCTTTCGGGCTGCTaGGGCAACTCCCTTTTCCGCTTGCTTTCGCGACCA | + |
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Preference number: 6 (lower is better) Translates to: PGPEAGGKLSGC*GNSLFRLLSRP Trigger: TGGTCGCGAAAGCAAGCGGAAAAGGGAGTTGCCTCAGCAGCCCGAAAGCTTCCCTCCTGCCTCGGGGCCCGG 65% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000036917.3 ENSMUST00000160392.9 |
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| CDS CCA 72 bp | GCGAGGCCGGGCCAAACAGGAAGGGTTCGTGGAGCATaGGGTGCGGCGGGTGTGAGTGGTGATGATGGTGAT | + |
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Preference number: 6 (lower is better) Translates to: ARPGQTGRVRGA*GAAGVSGDDGD Trigger: ATCACCATCATCACCACTCACACCCGCCGCACCCCATGCTCCACGAACCCTTCCTGTTTGGCCCGGCCTCGC 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000036917.3 ENSMUST00000160392.9 |
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| CDS CAA 90 bp | TCCGCGAACGCGCTGTTAATGCTCTCTGTGCGTCTCCTCTCCTTCTaGGGTCCTGAGCCTTTTCGTTTGGGCAGGCGGCTTCCAAGAGCC | + |
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Preference number: 6 (lower is better) Translates to: SANALLMLSVRLLSF*GPEPFRLGRRLPRA Trigger: GGCTCTTGGAAGCCGCCTGCCCAAACGAAAAGGCTCAGGACCCAAGAAGGAGAGGAGACGCACAGAGAGCATTAACAGCGCGTTCGCGGA 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000036917.3 ENSMUST00000160392.9 |
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| CDS CAA 72 bp | CTTTCGCGACCACCATCCGTCTTTTTGAGTTCAGCCTaGAAGGCCTCGGGGTCACCTGCTTGTGCATCCTTG | + |
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Preference number: 6 (lower is better) Translates to: LSRPPSVFLSSA*KASGSPACASL Trigger: CAAGGATGCACAAGCAGGTGACCCCGAGGCCTTCAAGGCTGAACTCAAAAAGACGGATGGTGGTCGCGAAAG 56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000036917.3 ENSMUST00000160392.9 |
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