Pregenerated sensors for HAMP2 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000056978Ensembl transcript IDs: ENSMUST00000074671.9, ENSMUST00000205641.2, ENSMUST00000217812.2
Found 28 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS-3UTR GCA 90 bp | AGGTCATTGCTGGAGAGGGCAGGAATGAATACTGGGGTTGAGGGGCTGCAGGGGGGAGATAGGTGGTGCTaGTCAGGCTGGCAAGGAGGA | + |
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Preference number: 4 (lower is better) Translates to: RSLLERAGMNTGVEGLQGGDRWC*SGWQGG Trigger: TCCTCCTTGCCAGCCTGAGCAGCACCACCTATCTCC...CCCCTGCAGCCCCTCAACCCCAGTATTCATTCCTGCCCTCTCCAGCAATGACCT 59% GC, longest homopolymer 6 nt, total homopolymer stretches 14 nt. Matches the following 2 transcripts: ENSMUST00000074671.9 ENSMUST00000217812.2 |
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| CDS-3UTR GCA 90 bp | TCAAGGTCATTGCTGGAGAGGGCAGGAATGAATACTGGGGTTGAGGGGCTGCAGGGAGATAGGTGGTGCTaGTCAGGCTGGCAAGGAGGA | + |
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Preference number: 4 (lower is better) Translates to: SRSLLERAGMNTGVEGLQGDRWC*SGWQGG Trigger: TCCTCCTTGCCAGCCTGAGCAGCACCACCTATCTCC...CTGCAGCCCCTCAACCCCAGTATTCATTCCTGCCCTCTCCAGCAATGACCTTGA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000074671.9 ENSMUST00000217812.2 |
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| CDS-3UTR GCA 90 bp | TCAAGGTCATTGCTGGAGAGGGCAGGAATGAATACTGGGGTTGAGGGGCTGCAGTCCCCGTGCAAAGGCTaGAGCTCTGTAGTCTGTCTC | + |
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Preference number: 4 (lower is better) Translates to: SRSLLERAGMNTGVEGLQSPCKG*SSVVCL Trigger: GAGACAGACTACAGAGCTGCAGCCTTTGCACGGGGA...CTGCAGCCCCTCAACCCCAGTATTCATTCCTGCCCTCTCCAGCAATGACCTTGA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 3 transcripts: ENSMUST00000074671.9 ENSMUST00000205641.2 ENSMUST00000217812.2 |
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| CDS-3UTR CCA 90 bp | AGGTCATTGCTGGAGAGGGCAGGAATGAATACTGGGGTTGAGGGGCTGCAGGGGTGTAGTCTGTCTCATTaGGTTTCTCAGAAGGACCCA | + |
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Preference number: 4 (lower is better) Translates to: RSLLERAGMNTGVEGLQGCSLSH*VSQKDP Trigger: TGGGTCCTTCTGAGAAACCCAATGAGACAGACTACA...CCCCTGCAGCCCCTCAACCCCAGTATTCATTCCTGCCCTCTCCAGCAATGACCT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000205641.2 |
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| CDS-3UTR GCA 90 bp | TTTATTTCAAGGTCATTGCTGGAGAGGGCAGGAATGAATACTGGGGTTGAGGGGGCTGGAGATAGGTGGTaGTGCTCAGGCTGGCAAGGA | + |
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Preference number: 4 (lower is better) Translates to: FISRSLLERAGMNTGVEGAGDRW*CSGWQG Trigger: TCCTTGCCAGCCTGAGCAGCACCACCTATCTCCAGC...CCCCTCAACCCCAGTATTCATTCCTGCCCTCTCCAGCAATGACCTTGAAATAAA 52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000074671.9 ENSMUST00000217812.2 |
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| CDS-3UTR GCA 90 bp | ATCCTCTTTATTTCAAGGTCATTGCTGGAGAGGGCAGGAATGAATACTGGGGTTGCTGGAGATAGGTGGTaGTGCTCAGGCTGGCAAGGA | + |
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Preference number: 4 (lower is better) Translates to: ILFISRSLLERAGMNTGVAGDRW*CSGWQG Trigger: TCCTTGCCAGCCTGAGCAGCACCACCTATCTCCAGC...AACCCCAGTATTCATTCCTGCCCTCTCCAGCAATGACCTTGAAATAAAGAGGAT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000074671.9 ENSMUST00000217812.2 |
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| CDS-3UTR GCA 90 bp | TTTATTTCAAGGTCATTGCTGGAGAGGGCAGGAATGAATACTGGGGTTGAGGGGCTGCTTTCTTCCCCGTaGAAAGGCTGCAGCTCTGTA | + |
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Preference number: 4 (lower is better) Translates to: FISRSLLERAGMNTGVEGLLSSP*KGCSSV Trigger: TACAGAGCTGCAGCCTTTGCACGGGGAAGAAAGCAG...CCCCTCAACCCCAGTATTCATTCCTGCCCTCTCCAGCAATGACCTTGAAATAAA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 3 transcripts: ENSMUST00000074671.9 ENSMUST00000205641.2 ENSMUST00000217812.2 |
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| CDS-3UTR GCA 90 bp | GTCATCCTCTTTATTTCAAGGTCATTGCTGGAGAGGGCAGGAATGAATACTGGGTCGCAATGTCTGCCCTaGTTTCTTCCCCGTGCAAAG | + |
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Preference number: 4 (lower is better) Translates to: VILFISRSLLERAGMNTGSQCLP*FLPRAK Trigger: CTTTGCACGGGGAAGAAAGCAGGGCAGACATTGCGA...CCCAGTATTCATTCCTGCCCTCTCCAGCAATGACCTTGAAATAAAGAGGATGAC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000074671.9 ENSMUST00000205641.2 ENSMUST00000217812.2 |
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| CDS-3UTR GCA 90 bp | ATTTCAAGGTCATTGCTGGAGAGGGCAGGAATGAATACTGGGGTTGAGGGGCTGCTCTTCCTTCTCTTCTaGATTGGGATCGCAATGTCT | + |
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Preference number: 4 (lower is better) Translates to: ISRSLLERAGMNTGVEGLLFLLF*IGIAMS Trigger: AGACATTGCGATCCCAATGCAGAAGAGAAGGAAGAG...CAGCCCCTCAACCCCAGTATTCATTCCTGCCCTCTCCAGCAATGACCTTGAAAT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000074671.9 ENSMUST00000205641.2 ENSMUST00000217812.2 |
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| CDS-3UTR GCA 90 bp | ATCCTCTTTATTTCAAGGTCATTGCTGGAGAGGGCAGGAATGAATACTGGGGTTCTGCTTTCTTCCCCGTaGAAAGGCTGCAGCTCTGTA | + |
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Preference number: 4 (lower is better) Translates to: ILFISRSLLERAGMNTGVLLSSP*KGCSSV Trigger: TACAGAGCTGCAGCCTTTGCACGGGGAAGAAAGCAG...AACCCCAGTATTCATTCCTGCCCTCTCCAGCAATGACCTTGAAATAAAGAGGAT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000074671.9 ENSMUST00000205641.2 ENSMUST00000217812.2 |
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| CDS-3UTR GCA 90 bp | ATCCTCTTTATTTCAAGGTCATTGCTGGAGAGGGCAGGAATGAATACTGGGGTTTCGCAATGTCTGCCCTaGTTTCTTCCCCGTGCAAAG | + |
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Preference number: 4 (lower is better) Translates to: ILFISRSLLERAGMNTGVSQCLP*FLPRAK Trigger: CTTTGCACGGGGAAGAAAGCAGGGCAGACATTGCGA...AACCCCAGTATTCATTCCTGCCCTCTCCAGCAATGACCTTGAAATAAAGAGGAT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000074671.9 ENSMUST00000205641.2 ENSMUST00000217812.2 |
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| CDS-3UTR CCA 90 bp | CTCTTTATTTCAAGGTCATTGCTGGAGAGGGCAGGAATGAATACTGGGGTTGAGCCTTCTCTTCTGCATTaGGATCGCAATGTCTGCCCT | + |
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Preference number: 4 (lower is better) Translates to: LFISRSLLERAGMNTGVEPSLLH*DRNVCP Trigger: AGGGCAGACATTGCGATCCCAATGCAGAAGAGAAGG...CTCAACCCCAGTATTCATTCCTGCCCTCTCCAGCAATGACCTTGAAATAAAGAG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000074671.9 ENSMUST00000205641.2 ENSMUST00000217812.2 |
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| CDS-3UTR CCA 90 bp | CATCCTCTTTATTTCAAGGTCATTGCTGGAGAGGGCAGGAATGAATACTGGGGTCCTTCTCTTCTGCATTaGGATCGCAATGTCTGCCCT | + |
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Preference number: 4 (lower is better) Translates to: HPLYFKVIAGEGRNEYWGPSLLH*DRNVCP Trigger: AGGGCAGACATTGCGATCCCAATGCAGAAGAGAAGG...ACCCCAGTATTCATTCCTGCCCTCTCCAGCAATGACCTTGAAATAAAGAGGATG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000074671.9 ENSMUST00000205641.2 ENSMUST00000217812.2 |
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| CDS-3UTR TCA 90 bp | GTCATCCTCTTTATTTCAAGGTCATTGCTGGAGAGGGCAGGAATGAATACTGGGTGCAGATGGGGAAGTTaGTGTCTCTCTTCCTTCTCT | + |
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Preference number: 4 (lower is better) Translates to: VILFISRSLLERAGMNTGCRWGS*CLSSFS Trigger: AGAGAAGGAAGAGAGACATCAACTTCCCCATCTGCA...CCCAGTATTCATTCCTGCCCTCTCCAGCAATGACCTTGAAATAAAGAGGATGAC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000074671.9 ENSMUST00000205641.2 ENSMUST00000217812.2 |
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| CDS-3UTR GCA 90 bp | AAAGTCATCCTCTTTATTTCAAGGTCATTGCTGGAGAGGGCAGGAATGAATACTCTGCTTTCTTCCCCGTaGAAAGGCTGCAGCTCTGTA | + |
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Preference number: 4 (lower is better) Translates to: KVILFISRSLLERAGMNTLLSSP*KGCSSV Trigger: TACAGAGCTGCAGCCTTTGCACGGGGAAGAAAGCAG...AGTATTCATTCCTGCCCTCTCCAGCAATGACCTTGAAATAAAGAGGATGACTTT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000074671.9 ENSMUST00000205641.2 ENSMUST00000217812.2 |
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| CDS-3UTR GCA 90 bp | AAAGTCATCCTCTTTATTTCAAGGTCATTGCTGGAGAGGGCAGGAATGAATACTTCGCAATGTCTGCCCTaGTTTCTTCCCCGTGCAAAG | + |
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Preference number: 4 (lower is better) Translates to: KVILFISRSLLERAGMNTSQCLP*FLPRAK Trigger: CTTTGCACGGGGAAGAAAGCAGGGCAGACATTGCGA...AGTATTCATTCCTGCCCTCTCCAGCAATGACCTTGAAATAAAGAGGATGACTTT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000074671.9 ENSMUST00000205641.2 ENSMUST00000217812.2 |
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| CDS-3UTR GCA 90 bp | CTCTTTATTTCAAGGTCATTGCTGGAGAGGGCAGGAATGAATACTGGGGTTGAGCTCTTCCTTCTCTTCTaGATTGGGATCGCAATGTCT | + |
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Preference number: 4 (lower is better) Translates to: LFISRSLLERAGMNTGVELFLLF*IGIAMS Trigger: AGACATTGCGATCCCAATGCAGAAGAGAAGGAAGAG...CTCAACCCCAGTATTCATTCCTGCCCTCTCCAGCAATGACCTTGAAATAAAGAG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000074671.9 ENSMUST00000205641.2 ENSMUST00000217812.2 |
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| CDS-3UTR GCA 90 bp | ATCCTCTTTATTTCAAGGTCATTGCTGGAGAGGGCAGGAATGAATACTGGGGTTCTCTTCCTTCTCTTCTaGATTGGGATCGCAATGTCT | + |
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Preference number: 4 (lower is better) Translates to: ILFISRSLLERAGMNTGVLFLLF*IGIAMS Trigger: AGACATTGCGATCCCAATGCAGAAGAGAAGGAAGAG...AACCCCAGTATTCATTCCTGCCCTCTCCAGCAATGACCTTGAAATAAAGAGGAT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000074671.9 ENSMUST00000205641.2 ENSMUST00000217812.2 |
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| CDS-3UTR CCA 90 bp | AAAGTCATCCTCTTTATTTCAAGGTCATTGCTGGAGAGGGCAGGAATGAATACTCCTTCTCTTCTGCATTaGGATCGCAATGTCTGCCCT | + |
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Preference number: 4 (lower is better) Translates to: KVILFISRSLLERAGMNTPSLLH*DRNVCP Trigger: AGGGCAGACATTGCGATCCCAATGCAGAAGAGAAGG...AGTATTCATTCCTGCCCTCTCCAGCAATGACCTTGAAATAAAGAGGATGACTTT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000074671.9 ENSMUST00000205641.2 ENSMUST00000217812.2 |
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| CDS-3UTR TCA 90 bp | AAAGTCATCCTCTTTATTTCAAGGTCATTGCTGGAGAGGGCAGGAATGAATACTTGCAGATGGGGAAGTTaGTGTCTCTCTTCCTTCTCT | + |
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Preference number: 4 (lower is better) Translates to: KVILFISRSLLERAGMNTCRWGS*CLSSFS Trigger: AGAGAAGGAAGAGAGACATCAACTTCCCCATCTGCA...AGTATTCATTCCTGCCCTCTCCAGCAATGACCTTGAAATAAAGAGGATGACTTT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000074671.9 ENSMUST00000205641.2 ENSMUST00000217812.2 |
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| CDS GCA 90 bp | CTCTTCTGCATTGGGATCGCAATGTCTGCCCTGCTTTCTTCCCCGTaGAAAGGCTGCAGCTCTGTAGTCTGTCTCATCTGTTGCTGGAGA | + |
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Preference number: 5 (lower is better) Translates to: LFCIGIAMSALLSSP*KGCSSVVCLICCWR Trigger: TCTCCAGCAACAGATGAGACAGACTACAGAGCTGCAGCCTTTGCACGGGGAAGAAAGCAGGGCAGACATTGCGATCCCAATGCAGAAGAG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000074671.9 ENSMUST00000217812.2 |
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| CDS GCA 90 bp | CTCTTCTGCATTGGGATCGCAATGTCTGCCCTGCTTTCTTCCCCGTaGAAAGGCTGCAGCTCTGTAGTCTGTCTCATTGGGTTTCTCAGA | + |
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Preference number: 5 (lower is better) Translates to: LFCIGIAMSALLSSP*KGCSSVVCLIGFLR Trigger: TCTGAGAAACCCAATGAGACAGACTACAGAGCTGCAGCCTTTGCACGGGGAAGAAAGCAGGGCAGACATTGCGATCCCAATGCAGAAGAG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000205641.2 |
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| CDS-3UTR CAA 90 bp | CTCTTTATTTCAAGGTCATTGCTGGAGAGGGCAGGAATGAATACTGGGGTTGAGAGTCTGTCTCATCTGTaGCTGGAGATAGGTGGTGCT | + |
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Preference number: 5 (lower is better) Translates to: LFISRSLLERAGMNTGVESLSHL*LEIGGA Trigger: AGCACCACCTATCTCCAGCAACAGATGAGACAGACT...CTCAACCCCAGTATTCATTCCTGCCCTCTCCAGCAATGACCTTGAAATAAAGAG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000074671.9 ENSMUST00000217812.2 |
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| CDS-3UTR CAA 90 bp | ATCCTCTTTATTTCAAGGTCATTGCTGGAGAGGGCAGGAATGAATACTGGGGTTAGTCTGTCTCATCTGTaGCTGGAGATAGGTGGTGCT | + |
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Preference number: 5 (lower is better) Translates to: ILFISRSLLERAGMNTGVSLSHL*LEIGGA Trigger: AGCACCACCTATCTCCAGCAACAGATGAGACAGACT...AACCCCAGTATTCATTCCTGCCCTCTCCAGCAATGACCTTGAAATAAAGAGGAT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000074671.9 ENSMUST00000217812.2 |
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| CDS GCA 72 bp | GCAATGTCTGCCCTGCTTTCTTCCCCGTGCAAAGGCTaGAGCTCTGTAGTCTGTCTCATCTGTTGCTGGAGA | + |
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Preference number: 6 (lower is better) Translates to: AMSALLSSPCKG*SSVVCLICCWR Trigger: TCTCCAGCAACAGATGAGACAGACTACAGAGCTGCAGCCTTTGCACGGGGAAGAAAGCAGGGCAGACATTGC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000074671.9 ENSMUST00000217812.2 |
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| CDS GCA 72 bp | ATTGGGATCGCAATGTCTGCCCTGCTTTCTTCCCCGTaGAAAGGCTGCAGCTCTGTAGTCTGTCTCATTGGG | + |
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Preference number: 6 (lower is better) Translates to: IGIAMSALLSSP*KGCSSVVCLIG Trigger: CCCAATGAGACAGACTACAGAGCTGCAGCCTTTGCACGGGGAAGAAAGCAGGGCAGACATTGCGATCCCAAT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000205641.2 |
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| CDS GCA 72 bp | ATTGGGATCGCAATGTCTGCCCTGCTTTCTTCCCCGTaGAAAGGCTGCAGCTCTGTAGTCTGTCTCATCTGT | + |
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Preference number: 6 (lower is better) Translates to: IGIAMSALLSSP*KGCSSVVCLIC Trigger: ACAGATGAGACAGACTACAGAGCTGCAGCCTTTGCACGGGGAAGAAAGCAGGGCAGACATTGCGATCCCAAT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000074671.9 ENSMUST00000217812.2 |
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| CDS GCA 72 bp | GCAATGTCTGCCCTGCTTTCTTCCCCGTGCAAAGGCTaGAGCTCTGTAGTCTGTCTCATTGGGTTTCTCAGA | + |
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Preference number: 6 (lower is better) Translates to: AMSALLSSPCKG*SSVVCLIGFLR Trigger: TCTGAGAAACCCAATGAGACAGACTACAGAGCTGCAGCCTTTGCACGGGGAAGAAAGCAGGGCAGACATTGC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000205641.2 |
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