Pregenerated sensors for HAMP (Mus musculus)
Ensembl gene IDs: ENSMUSG00000050440Ensembl transcript IDs: ENSMUST00000062620.9
Found 17 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS-3UTR GCA 90 bp | TTTATTTCAAGGTCATTGGTGGGGAGGGCAGGAATAAATAATGGGGTTGAGGGGGATGGAGATAGGTGGTaGTGCTCAGGCTGGCAAGGA | + |
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Preference number: 4 (lower is better) Translates to: FISRSLVGRAGINNGVEGDGDRW*CSGWQG Trigger: TCCTTGCCAGCCTGAGCAGCACCACCTATCTCCATC...CCCCTCAACCCCATTATTTATTCCTGCCCTCCCCACCAATGACCTTGAAATAAA 50% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000062620.9 |
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| CDS-3UTR CCA 90 bp | AAAATCGTCTTTATTTCAAGGTCATTGGTGGGGAGGGCAGGAATAAATAATGGGAGGAGACAGGCAGCCTaGGTCCGAGTGCTGAGTGCC | + |
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Preference number: 4 (lower is better) Translates to: KIVFISRSLVGRAGINNGRRQAA*VRVLSA Trigger: GGCACTCAGCACTCGGACCCAGGCTGCCTGTCTCCT...CCCATTATTTATTCCTGCCCTCCCCACCAATGACCTTGAAATAAAGACGATTTT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000062620.9 |
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| CDS-3UTR CCA 90 bp | AATAAAATCGTCTTTATTTCAAGGTCATTGGTGGGGAGGGCAGGAATAAATAATTGGTGCTGCTCAGGCTaGCAAGGAGGAGAAGCAGGA | + |
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Preference number: 4 (lower is better) Translates to: NKIVFISRSLVGRAGINNWCCSG*QGGEAG Trigger: TCCTGCTTCTCCTCCTTGCCAGCCTGAGCAGCACCA...ATTATTTATTCCTGCCCTCCCCACCAATGACCTTGAAATAAAGACGATTTTATT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000062620.9 |
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| CDS-3UTR CCA 90 bp | ATCGTCTTTATTTCAAGGTCATTGGTGGGGAGGGCAGGAATAAATAATGGGGTTTGCAGATGGGGAAGTTaGTGTCTCTCTTCCTTCTCT | + |
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Preference number: 4 (lower is better) Translates to: IVFISRSLVGRAGINNGVCRWGS*CLSSFS Trigger: AGAGAAGGAAGAGAGACACCAACTTCCCCATCTGCA...AACCCCATTATTTATTCCTGCCCTCCCCACCAATGACCTTGAAATAAAGACGAT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000062620.9 |
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| CDS-3UTR CCA 90 bp | TTTATTTCAAGGTCATTGGTGGGGAGGGCAGGAATAAATAATGGGGTTGAGGGGCAACAGATACCACACTaGGAATTGTTACAGCATTTA | + |
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Preference number: 4 (lower is better) Translates to: FISRSLVGRAGINNGVEGQQIPH*ELLQHL Trigger: TAAATGCTGTAACAATTCCCAGTGTGGTATCTGTTG...CCCCTCAACCCCATTATTTATTCCTGCCCTCCCCACCAATGACCTTGAAATAAA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000062620.9 |
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| CDS-3UTR GCA 90 bp | AAAATCGTCTTTATTTCAAGGTCATTGGTGGGGAGGGCAGGAATAAATAATGGGCTCTTCCTTCTCTTCTaGATTGGTATCGCAATGTCT | + |
|
Preference number: 4 (lower is better) Translates to: KIVFISRSLVGRAGINNGLFLLF*IGIAMS Trigger: AGACATTGCGATACCAATGCAGAAGAGAAGGAAGAG...CCCATTATTTATTCCTGCCCTCCCCACCAATGACCTTGAAATAAAGACGATTTT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000062620.9 |
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| CDS-3UTR CAA 90 bp | TTTATTTCAAGGTCATTGGTGGGGAGGGCAGGAATAAATAATGGGGTTGAGGGGATGCAGATGGGGAAGTaGGTGTCTCTCTTCCTTCTC | + |
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Preference number: 5 (lower is better) Translates to: FISRSLVGRAGINNGVEGMQMGK*VSLFLL Trigger: GAGAAGGAAGAGAGACACCAACTTCCCCATCTGCAT...CCCCTCAACCCCATTATTTATTCCTGCCCTCCCCACCAATGACCTTGAAATAAA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt. Matches the following 1 transcripts: ENSMUST00000062620.9 |
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| CDS CCA 90 bp | GGGAATTGTTACAGCATTTACAGCAGAAGATGCAGATGGGGAAGTTaGTGTCTCTCTTCCTTCTCTTCTGCATTGGTATCGCAATGTCTG | + |
|
Preference number: 5 (lower is better) Translates to: GNCYSIYSRRCRWGS*CLSSFSSALVSQCL Trigger: CAGACATTGCGATACCAATGCAGAAGAGAAGGAAGAGAGACACCAACTTCCCCATCTGCATCTTCTGCTGTAAATGCTGTAACAATTCCC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000062620.9 |
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| CDS CCA 90 bp | TACCACACTGGGAATTGTTACAGCATTTACAGCAGAAGATGCAGATaGGGAAGTTGGTGTCTCTCTTCCTTCTCTTCTGCATTGGTATCG | + |
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Preference number: 5 (lower is better) Translates to: YHTGNCYSIYSRRCR*GSWCLSSFSSALVS Trigger: CGATACCAATGCAGAAGAGAAGGAAGAGAGACACCAACTTCCCCATCTGCATCTTCTGCTGTAAATGCTGTAACAATTCCCAGTGTGGTA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000062620.9 |
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| CDS-3UTR CAA 90 bp | AATAAAATCGTCTTTATTTCAAGGTCATTGGTGGGGAGGGCAGGAATAAATAATAGTCTGTCTCATCTGTaGATGGAGATAGGTGGTGCT | + |
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Preference number: 5 (lower is better) Translates to: NKIVFISRSLVGRAGINNSLSHL*MEIGGA Trigger: AGCACCACCTATCTCCATCAACAGATGAGACAGACT...ATTATTTATTCCTGCCCTCCCCACCAATGACCTTGAAATAAAGACGATTTTATT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000062620.9 |
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| CDS CAA 90 bp | TTCTTCCCCGTGCAAAGGCTGCAGCTCTGTAGTCTGTCTCATCTGTaGATGGAGATAGGTGGTGCTGCTCAGGCTGGCAAGGAGGAGAAG | + |
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Preference number: 6 (lower is better) Translates to: FFPVQRLQLCSLSHL*MEIGGAAQAGKEEK Trigger: CTTCTCCTCCTTGCCAGCCTGAGCAGCACCACCTATCTCCATCAACAGATGAGACAGACTACAGAGCTGCAGCCTTTGCACGGGGAAGAA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000062620.9 |
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| CDS CAA 72 bp | GTGCAAAGGCTGCAGCTCTGTAGTCTGTCTCATCTGTaGATGGAGATAGGTGGTGCTGCTCAGGCTGGCAAG | + |
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Preference number: 6 (lower is better) Translates to: VQRLQLCSLSHL*MEIGGAAQAGK Trigger: CTTGCCAGCCTGAGCAGCACCACCTATCTCCATCAACAGATGAGACAGACTACAGAGCTGCAGCCTTTGCAC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000062620.9 |
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| CDS CCA 72 bp | GGGGAAGTTGGTGTCTCTCTTCCTTCTCTTCTGCATTaGTATCGCAATGTCTGCCCTGCTTTCTTCCCCGTG | + |
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Preference number: 6 (lower is better) Translates to: GEVGVSLPSLLH*YRNVCPAFFPV Trigger: CACGGGGAAGAAAGCAGGGCAGACATTGCGATACCAATGCAGAAGAGAAGGAAGAGAGACACCAACTTCCCC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000062620.9 |
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| CDS GCA 72 bp | ATTGGTATCGCAATGTCTGCCCTGCTTTCTTCCCCGTaGAAAGGCTGCAGCTCTGTAGTCTGTCTCATCTGT | + |
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Preference number: 6 (lower is better) Translates to: IGIAMSALLSSP*KGCSSVVCLIC Trigger: ACAGATGAGACAGACTACAGAGCTGCAGCCTTTGCACGGGGAAGAAAGCAGGGCAGACATTGCGATACCAAT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000062620.9 |
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| CDS CAA 72 bp | TGGGGAAGTTGGTGTCTCTCTTCCTTCTCTTCTGCATaGGTATCGCAATGTCTGCCCTGCTTTCTTCCCCGT | + |
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Preference number: 6 (lower is better) Translates to: WGSWCLSSFSSA*VSQCLPCFLPR Trigger: ACGGGGAAGAAAGCAGGGCAGACATTGCGATACCAATGCAGAAGAGAAGGAAGAGAGACACCAACTTCCCCA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000062620.9 |
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| CDS GCA 72 bp | CAGATGGGGAAGTTGGTGTCTCTCTTCCTTCTCTTCTaGATTGGTATCGCAATGTCTGCCCTGCTTTCTTCC | + |
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Preference number: 6 (lower is better) Translates to: QMGKLVSLFLLF*IGIAMSALLSS Trigger: GGAAGAAAGCAGGGCAGACATTGCGATACCAATGCAGAAGAGAAGGAAGAGAGACACCAACTTCCCCATCTG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000062620.9 |
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| CDS CCA 72 bp | TACAGCATTTACAGCAGAAGATGCAGATGGGGAAGTTaGTGTCTCTCTTCCTTCTCTTCTGCATTGGTATCG | + |
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Preference number: 6 (lower is better) Translates to: YSIYSRRCRWGS*CLSSFSSALVS Trigger: CGATACCAATGCAGAAGAGAAGGAAGAGAGACACCAACTTCCCCATCTGCATCTTCTGCTGTAAATGCTGTA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000062620.9 |
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