Pregenerated sensors for HAGH (Mus musculus)
Ensembl gene IDs: ENSMUSG00000024158Ensembl transcript IDs: ENSMUST00000024974.16, ENSMUST00000118788.8, ENSMUST00000130989.8, ENSMUST00000149716.4, ENSMUST00000154363.8, ENSMUST00000164251.8, ENSMUST00000169200.8
Found 31 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS CCA 90 bp | GAGATAGTCCCAGCAGGGCCTGACCCAGACCACGGCGCGCGCAGGTaGCTCCCAGCGCTGACAGGCTCCGGAGACACAGCGACCCGCGAC | + |
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Preference number: 5 (lower is better) Translates to: EIVPAGPDPDHGARR*LPALTGSGDTATRD Trigger: GTCGCGGGTCGCTGTGTCTCCGGAGCCTGTCAGCGCTGGGAGCCACCTGCGCGCGCCGTGGTCTGGGTCAGGCCCTGCTGGGACTATCTC 71% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000118788.8 ENSMUST00000154363.8 ENSMUST00000169200.8 |
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| CDS CCA 90 bp | CACTCTCATGAAGGGGTTGTAGGTGAACTCTTCTGCCAGGGTGGATaGCACCGTGGGCTCCCCGATGGCATACTTCTCCTTGGCCCAGGC | + |
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Preference number: 5 (lower is better) Translates to: HSHEGVVGELFCQGG*HRGLPDGILLLGPG Trigger: GCCTGGGCCAAGGAGAAGTATGCCATCGGGGAGCCCACGGTGCCATCCACCCTGGCAGAAGAGTTCACCTACAACCCCTTCATGAGAGTG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000024974.16 ENSMUST00000118788.8 ENSMUST00000169200.8 |
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| CDS TCA 90 bp | CCAGCTTCTCGTTCCCACCAGCGTGGTCCCAGTGGTGGTGAGTGGTaGGCACTGTGGTCAGTTTCACACGGTGCTTTTTCGCAGCTTCTA | + |
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Preference number: 5 (lower is better) Translates to: PASRSHQRGPSGGEW*ALWSVSHGAFSQLL Trigger: TAGAAGCTGCGAAAAAGCACCGTGTGAAACTGACCACAGTGCTCACCACTCACCACCACTGGGACCACGCTGGTGGGAACGAGAAGCTGG 57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 5 transcripts: ENSMUST00000024974.16 ENSMUST00000118788.8 ENSMUST00000130989.8 ENSMUST00000149716.4 ENSMUST00000164251.8 |
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| CDS TCA 90 bp | AGCTTCACCAGCTTCTCGTTCCCACCAGCGTGGTCCCAGTGGTGGTaGGTGGTGAGCACTGTGGTCAGTTTCACACGGTGCTTTTTCGCA | + |
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Preference number: 5 (lower is better) Translates to: SFTSFSFPPAWSQWW*VVSTVVSFTRCFFA Trigger: TGCGAAAAAGCACCGTGTGAAACTGACCACAGTGCTCACCACTCACCACCACTGGGACCACGCTGGTGGGAACGAGAAGCTGGTGAAGCT 57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 5 transcripts: ENSMUST00000024974.16 ENSMUST00000118788.8 ENSMUST00000130989.8 ENSMUST00000149716.4 ENSMUST00000164251.8 |
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| CDS TCA 90 bp | GGCTCCCCGATGGCATACTTCTCCTTGGCCCAGGCTAGTTTCTCTTaGATGGCAGCATTGCCGGGCTCCACATGGCGTGCAAACTTAAGG | + |
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Preference number: 5 (lower is better) Translates to: GSPMAYFSLAQASFS*MAALPGSTWRANLR Trigger: CCTTAAGTTTGCACGCCATGTGGAGCCCGGCAATGCTGCCATTCAAGAGAAACTAGCCTGGGCCAAGGAGAAGTATGCCATCGGGGAGCC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000024974.16 ENSMUST00000118788.8 ENSMUST00000164251.8 ENSMUST00000169200.8 |
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| CDS GCA 90 bp | AGTCTTCTCCTTCACTCTCATGAAGGGGTTGTAGGTGAACTCTTCTaGCAGGGTGGATGGCACCGTGGGCTCCCCGATGGCATACTTCTC | + |
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Preference number: 5 (lower is better) Translates to: SLLLHSHEGVVGELF*QGGWHRGLPDGILL Trigger: GAGAAGTATGCCATCGGGGAGCCCACGGTGCCATCCACCCTGGCAGAAGAGTTCACCTACAACCCCTTCATGAGAGTGAAGGAGAAGACT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000024974.16 ENSMUST00000118788.8 ENSMUST00000169200.8 |
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| CDS CCA 90 bp | GGTCAGTTTCACACGGTGCTTTTTCGCAGCTTCTATAACCTTCTGTaGTTGCACTGGGTCCACGATGGCGGCCTCCTGGGTGTCCTCATC | + |
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Preference number: 5 (lower is better) Translates to: GQFHTVLFRSFYNLL*LHWVHDGGLLGVLI Trigger: GATGAGGACACCCAGGAGGCCGCCATCGTGGACCCAGTGCAACCACAGAAGGTTATAGAAGCTGCGAAAAAGCACCGTGTGAAACTGACC 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 6 transcripts: ENSMUST00000024974.16 ENSMUST00000118788.8 ENSMUST00000130989.8 ENSMUST00000149716.4 ENSMUST00000154363.8 ENSMUST00000164251.8 |
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| CDS TCA 90 bp | GTTGCACTGGGTCCACGATGGCGGCCTCCTGGGTGTCCTCATCAATaGTCAGGTACATGTAGTTGTCAGTCAGGGCAGGCAGTAGTTCAA | + |
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Preference number: 5 (lower is better) Translates to: VALGPRWRPPGCPHQ*SGTCSCQSGQAVVQ Trigger: TTGAACTACTGCCTGCCCTGACTGACAACTACATGTACCTGATCATTGATGAGGACACCCAGGAGGCCGCCATCGTGGACCCAGTGCAAC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 6 transcripts: ENSMUST00000024974.16 ENSMUST00000118788.8 ENSMUST00000130989.8 ENSMUST00000149716.4 ENSMUST00000154363.8 ENSMUST00000164251.8 |
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| CDS CCA 90 bp | CACACGGTGCTTTTTCGCAGCTTCTATAACCTTCTGTGGTTGCACTaGGTCCACGATGGCGGCCTCCTGGGTGTCCTCATCAATGATCAG | + |
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Preference number: 5 (lower is better) Translates to: HTVLFRSFYNLLWLH*VHDGGLLGVLINDQ Trigger: CTGATCATTGATGAGGACACCCAGGAGGCCGCCATCGTGGACCCAGTGCAACCACAGAAGGTTATAGAAGCTGCGAAAAAGCACCGTGTG 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 6 transcripts: ENSMUST00000024974.16 ENSMUST00000118788.8 ENSMUST00000130989.8 ENSMUST00000149716.4 ENSMUST00000154363.8 ENSMUST00000164251.8 |
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| CDS GCA 90 bp | AGTTTCACACGGTGCTTTTTCGCAGCTTCTATAACCTTCTGTGGTTaGACTGGGTCCACGATGGCGGCCTCCTGGGTGTCCTCATCAATG | + |
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Preference number: 5 (lower is better) Translates to: SFTRCFFAASITFCG*TGSTMAASWVSSSM Trigger: CATTGATGAGGACACCCAGGAGGCCGCCATCGTGGACCCAGTGCAACCACAGAAGGTTATAGAAGCTGCGAAAAAGCACCGTGTGAAACT 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 6 transcripts: ENSMUST00000024974.16 ENSMUST00000118788.8 ENSMUST00000130989.8 ENSMUST00000149716.4 ENSMUST00000154363.8 ENSMUST00000164251.8 |
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| CDS TCA 90 bp | CTTGCTCACAAAGTAACAGATGTGTCCCGAAGTATGGCAGGGTGTTaGCAGGCATTTGACACTGAGAGACCCCACCTGCAGTGTGGAGAG | + |
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Preference number: 5 (lower is better) Translates to: LAHKVTDVSRSMAGC*QAFDTERPHLQCGE Trigger: CTCTCCACACTGCAGGTGGGGTCTCTCAGTGTCAAATGCCTGTCAACACCCTGCCATACTTCGGGACACATCTGTTACTTTGTGAGCAAG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 6 transcripts: ENSMUST00000024974.16 ENSMUST00000118788.8 ENSMUST00000130989.8 ENSMUST00000149716.4 ENSMUST00000164251.8 ENSMUST00000169200.8 |
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| CDS TCA 90 bp | GCCAGCAACAAACAATGTGTCACCTGTGAACACAGCAGAAGGCTCTaGGCTCCCAGGCTTGCTCACAAAGTAACAGATGTGTCCCGAAGT | + |
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Preference number: 5 (lower is better) Translates to: ASNKQCVTCEHSRRL*APRLAHKVTDVSRS Trigger: ACTTCGGGACACATCTGTTACTTTGTGAGCAAGCCTGGGAGCTCAGAGCCTTCTGCTGTGTTCACAGGTGACACATTGTTTGTTGCTGGC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 5 transcripts: ENSMUST00000024974.16 ENSMUST00000118788.8 ENSMUST00000130989.8 ENSMUST00000164251.8 ENSMUST00000169200.8 |
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| CDS GCA 90 bp | AGGAAGCCGGCCCAAGACTTCAAGCAGCGCCTTGTACATCTCATCTaGAGTTCCCTCATAGAACTTCCCACAGCCAGCAACAAACAATGT | + |
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Preference number: 5 (lower is better) Translates to: RKPAQDFKQRLVHLI*SSLIELPTASNKQC Trigger: ACATTGTTTGTTGCTGGCTGTGGGAAGTTCTATGAGGGAACTGCAGATGAGATGTACAAGGCGCTGCTTGAAGTCTTGGGCCGGCTTCCT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 5 transcripts: ENSMUST00000024974.16 ENSMUST00000118788.8 ENSMUST00000130989.8 ENSMUST00000164251.8 ENSMUST00000169200.8 |
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| CDS TCA 90 bp | GTAGTTCAACCTTCATTATGTCTTGCTGCACAGTCAGATTCTTCCTaGAGTCTGAGTGACACAGAGATAGTCCCAGCAGGGCCTGACCCA | + |
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Preference number: 5 (lower is better) Translates to: VVQPSLCLAAQSDSS*SLSDTEIVPAGPDP Trigger: TGGGTCAGGCCCTGCTGGGACTATCTCTGTGTCACTCAGACTTCAGGAAGAATCTGACTGTGCAGCAAGACATAATGAAGGTTGAACTAC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000118788.8 ENSMUST00000154363.8 |
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| CDS TCA 90 bp | CTCCATAAACCTTCATTATGTCTTGCTGCACAGTCAGATTCTTCCTaGAGTCTGAGTGACACAGAGATAGTCCCAGCAGGGCCTGACCCA | + |
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Preference number: 5 (lower is better) Translates to: LHKPSLCLAAQSDSS*SLSDTEIVPAGPDP Trigger: TGGGTCAGGCCCTGCTGGGACTATCTCTGTGTCACTCAGACTTCAGGAAGAATCTGACTGTGCAGCAAGACATAATGAAGGTTTATGGAG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000169200.8 |
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| CDS TCA 72 bp | ACCCAGACCACGGCGCGCGCAGGTGGCTCCCAGCGCTaGCAGGCTCCGGAGACACAGCGACCCGCGACCCAG | + |
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Preference number: 6 (lower is better) Translates to: TQTTARAGGSQR*QAPETQRPATQ Trigger: CTGGGTCGCGGGTCGCTGTGTCTCCGGAGCCTGTCAGCGCTGGGAGCCACCTGCGCGCGCCGTGGTCTGGGT 74% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000118788.8 ENSMUST00000154363.8 ENSMUST00000169200.8 |
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| CDS CCA 72 bp | CCAGCAGGGCCTGACCCAGACCACGGCGCGCGCAGGTaGCTCCCAGCGCTGACAGGCTCCGGAGACACAGCG | + |
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Preference number: 6 (lower is better) Translates to: PAGPDPDHGARR*LPALTGSGDTA Trigger: CGCTGTGTCTCCGGAGCCTGTCAGCGCTGGGAGCCACCTGCGCGCGCCGTGGTCTGGGTCAGGCCCTGCTGG 74% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000118788.8 ENSMUST00000154363.8 ENSMUST00000169200.8 |
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| CDS TCA 72 bp | CGTTCCCACCAGCGTGGTCCCAGTGGTGGTGAGTGGTaGGCACTGTGGTCAGTTTCACACGGTGCTTTTTCG | + |
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Preference number: 6 (lower is better) Translates to: RSHQRGPSGGEW*ALWSVSHGAFS Trigger: CGAAAAAGCACCGTGTGAAACTGACCACAGTGCTCACCACTCACCACCACTGGGACCACGCTGGTGGGAACG 58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 5 transcripts: ENSMUST00000024974.16 ENSMUST00000118788.8 ENSMUST00000130989.8 ENSMUST00000149716.4 ENSMUST00000164251.8 |
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| CDS CCA 72 bp | GAAGGGGTTGTAGGTGAACTCTTCTGCCAGGGTGGATaGCACCGTGGGCTCCCCGATGGCATACTTCTCCTT | + |
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Preference number: 6 (lower is better) Translates to: EGVVGELFCQGG*HRGLPDGILLL Trigger: AAGGAGAAGTATGCCATCGGGGAGCCCACGGTGCCATCCACCCTGGCAGAAGAGTTCACCTACAACCCCTTC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000024974.16 ENSMUST00000118788.8 ENSMUST00000169200.8 |
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| CDS CCA 72 bp | ATGGCACCGTGGGCTCCCCGATGGCATACTTCTCCTTaGCCCAGGCTAGTTTCTCTTGAATGGCAGCATTGC | + |
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Preference number: 6 (lower is better) Translates to: MAPWAPRWHTSP*PRLVSLEWQHC Trigger: GCAATGCTGCCATTCAAGAGAAACTAGCCTGGGCCAAGGAGAAGTATGCCATCGGGGAGCCCACGGTGCCAT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000024974.16 ENSMUST00000118788.8 ENSMUST00000164251.8 ENSMUST00000169200.8 |
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| CDS CAA 72 bp | ACGGTGCTTTTTCGCAGCTTCTATAACCTTCTGTGGTaGCACTGGGTCCACGATGGCGGCCTCCTGGGTGTC | + |
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Preference number: 6 (lower is better) Translates to: TVLFRSFYNLLW*HWVHDGGLLGV Trigger: GACACCCAGGAGGCCGCCATCGTGGACCCAGTGCAACCACAGAAGGTTATAGAAGCTGCGAAAAAGCACCGT 57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 6 transcripts: ENSMUST00000024974.16 ENSMUST00000118788.8 ENSMUST00000130989.8 ENSMUST00000149716.4 ENSMUST00000154363.8 ENSMUST00000164251.8 |
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| CDS TCA 72 bp | ATGGCATACTTCTCCTTGGCCCAGGCTAGTTTCTCTTaGATGGCAGCATTGCCGGGCTCCACATGGCGTGCA | + |
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Preference number: 6 (lower is better) Translates to: MAYFSLAQASFS*MAALPGSTWRA Trigger: TGCACGCCATGTGGAGCCCGGCAATGCTGCCATTCAAGAGAAACTAGCCTGGGCCAAGGAGAAGTATGCCAT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000024974.16 ENSMUST00000118788.8 ENSMUST00000164251.8 ENSMUST00000169200.8 |
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| CDS TCA 72 bp | TCTGAGCCATCTCTCCAGCCCAGTGGTGGTGAGTGGTaGGCACTGTGGTCAGTTTCACACGGTGCTTTTTCG | + |
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Preference number: 6 (lower is better) Translates to: SEPSLQPSGGEW*ALWSVSHGAFS Trigger: CGAAAAAGCACCGTGTGAAACTGACCACAGTGCTCACCACTCACCACCACTGGGCTGGAGAGATGGCTCAGA 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000154363.8 |
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| CDS CCA 72 bp | CTTTTTCGCAGCTTCTATAACCTTCTGTGGTTGCACTaGGTCCACGATGGCGGCCTCCTGGGTGTCCTCATC | + |
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Preference number: 6 (lower is better) Translates to: LFRSFYNLLWLH*VHDGGLLGVLI Trigger: GATGAGGACACCCAGGAGGCCGCCATCGTGGACCCAGTGCAACCACAGAAGGTTATAGAAGCTGCGAAAAAG 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 6 transcripts: ENSMUST00000024974.16 ENSMUST00000118788.8 ENSMUST00000130989.8 ENSMUST00000149716.4 ENSMUST00000154363.8 ENSMUST00000164251.8 |
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| CDS TCA 72 bp | ACTTCCCACAGCCAGCAACAAACAATGTGTCACCTGTaGACACAGCAGAAGGCTCTGAGCTCCCAGGCTTGC | + |
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Preference number: 6 (lower is better) Translates to: TSHSQQQTMCHL*TQQKALSSQAC Trigger: GCAAGCCTGGGAGCTCAGAGCCTTCTGCTGTGTTCACAGGTGACACATTGTTTGTTGCTGGCTGTGGGAAGT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 5 transcripts: ENSMUST00000024974.16 ENSMUST00000118788.8 ENSMUST00000130989.8 ENSMUST00000164251.8 ENSMUST00000169200.8 |
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| CDS GCA 72 bp | ATGGTGGTCACAGGGTCTGTCTCGCCAGCATGCTGTTaGACAGTCTTCTCCTTCACTCTCATGAAGGGGTTG | + |
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Preference number: 6 (lower is better) Translates to: MVVTGSVSPACC*TVFSFTLMKGL Trigger: CAACCCCTTCATGAGAGTGAAGGAGAAGACTGTGCAACAGCATGCTGGCGAGACAGACCCTGTGACCACCAT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000024974.16 ENSMUST00000118788.8 ENSMUST00000169200.8 |
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| CDS CAA 90 bp | CAGTTTCACACGGTGCTTTTTCGCAGCTTCTATAACCTTCTGTGGTaGCACTGGGTCCACGATGGCGGCCTCCTGGGTGTCCTCATCAAT | + |
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Preference number: 6 (lower is better) Translates to: QFHTVLFRSFYNLLW*HWVHDGGLLGVLIN Trigger: ATTGATGAGGACACCCAGGAGGCCGCCATCGTGGACCCAGTGCAACCACAGAAGGTTATAGAAGCTGCGAAAAAGCACCGTGTGAAACTG 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 6 transcripts: ENSMUST00000024974.16 ENSMUST00000118788.8 ENSMUST00000130989.8 ENSMUST00000149716.4 ENSMUST00000154363.8 ENSMUST00000164251.8 |
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| CDS GCA 72 bp | GCCCAAGACTTCAAGCAGCGCCTTGTACATCTCATCTaGAGTTCCCTCATAGAACTTCCCACAGCCAGCAAC | + |
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Preference number: 6 (lower is better) Translates to: AQDFKQRLVHLI*SSLIELPTASN Trigger: GTTGCTGGCTGTGGGAAGTTCTATGAGGGAACTGCAGATGAGATGTACAAGGCGCTGCTTGAAGTCTTGGGC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 5 transcripts: ENSMUST00000024974.16 ENSMUST00000118788.8 ENSMUST00000130989.8 ENSMUST00000164251.8 ENSMUST00000169200.8 |
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| CDS TCA 72 bp | AAAGTAACAGATGTGTCCCGAAGTATGGCAGGGTGTTaGCAGGCATTTGACACTGAGAGACCCCACCTGCAG | + |
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Preference number: 6 (lower is better) Translates to: KVTDVSRSMAGC*QAFDTERPHLQ Trigger: CTGCAGGTGGGGTCTCTCAGTGTCAAATGCCTGTCAACACCCTGCCATACTTCGGGACACATCTGTTACTTT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 6 transcripts: ENSMUST00000024974.16 ENSMUST00000118788.8 ENSMUST00000130989.8 ENSMUST00000149716.4 ENSMUST00000164251.8 ENSMUST00000169200.8 |
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| CDS CCA 72 bp | TACGGTGTATTCATGACCACAGTAGACTTTTGTGTCTaGAGGAAGCCGGCCCAAGACTTCAAGCAGCGCCTT | + |
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Preference number: 6 (lower is better) Translates to: YGVFMTTVDFCV*RKPAQDFKQRL Trigger: AAGGCGCTGCTTGAAGTCTTGGGCCGGCTTCCTCCAGACACAAAAGTCTACTGTGGTCATGAATACACCGTA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000024974.16 ENSMUST00000118788.8 ENSMUST00000164251.8 ENSMUST00000169200.8 |
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| CDS GCA 72 bp | CTCTTGAATGGCAGCATTGCCGGGCTCCACATGGCGTaGAAACTTAAGGTTGTTTACGGTGTATTCATGACC | + |
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Preference number: 6 (lower is better) Translates to: LLNGSIAGLHMA*KLKVVYGVFMT Trigger: GGTCATGAATACACCGTAAACAACCTTAAGTTTGCACGCCATGTGGAGCCCGGCAATGCTGCCATTCAAGAG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000024974.16 ENSMUST00000118788.8 ENSMUST00000164251.8 ENSMUST00000169200.8 |
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