Pregenerated sensors for HACD3 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000033629Ensembl transcript IDs: ENSMUST00000036615.7
Found 64 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | CTCCTGCATCTCTGTTCCCTTCTGACCCCTGCAGCCATTCACATTTaGACTTCTAATCTCTGTTGCGCAGTACTTCTCCCTTTCTCCAGT | + |
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Preference number: 1 (lower is better) Translates to: LLHLCSLLTPAAIHI*TSNLCCAVLLPFSS Trigger: ACTGGAGAAAGGGAGAAGTACTGCGCAACAGAGATTAGAAGTCCAAATGTGAATGGCTGCAGGGGTCAGAAGGGAACAGAGATGCAGGAG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000036615.7 |
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| 3UTR CCA 90 bp | AGGAGGCAGAGGCAGATGAATCTCTTTCTGTGTTCAAGGCCAGCCTaGTCTACAGAGCAAGTTCTAGGAGAGCCAAAGCTACACAGAACA | + |
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Preference number: 1 (lower is better) Translates to: RRQRQMNLFLCSRPA*STEQVLGEPKLHRT Trigger: TGTTCTGTGTAGCTTTGGCTCTCCTAGAACTTGCTCTGTAGACCAGGCTGGCCTTGAACACAGAAAGAGATTCATCTGCCTCTGCCTCCT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000036615.7 |
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| 3UTR TCA 90 bp | CACCATAGGTTTACATGGAATGTGGTAGAGAGACTGAAGCTGTCTTaGACAGTAGCCAACCTCAAGGTCTGTATTCTGCATGCACACAGT | + |
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Preference number: 1 (lower is better) Translates to: HHRFTWNVVERLKLS*TVANLKVCILHAHS Trigger: ACTGTGTGCATGCAGAATACAGACCTTGAGGTTGGCTACTGTTCAAGACAGCTTCAGTCTCTCTACCACATTCCATGTAAACCTATGGTG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000036615.7 |
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| 3UTR GCA 90 bp | ATACACAAGAATGAACTTGTCCTCAGATACCAGATATCCATGTCATaGAAGTACAACACTAAGATAAGGACAGTAGACTCAGGAATGTTA | + |
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Preference number: 1 (lower is better) Translates to: IHKNELVLRYQISMS*KYNTKIRTVDSGML Trigger: TAACATTCCTGAGTCTACTGTCCTTATCTTAGTGTTGTACTTGCATGACATGGATATCTGGTATCTGAGGACAAGTTCATTCTTGTGTAT 38% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000036615.7 |
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| 3UTR-3UTR GCA 90 bp | CAGACAGCAACAAAGGGGATGCTAACAGCAACTAGAACATGGGAGTTTGCACAGGTAGGTGTTTGTGTTTaGCACAGGCATCATTACCAC | + |
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Preference number: 2 (lower is better) Translates to: QTATKGMLTATRTWEFAQVGVCV*HRHHYH Trigger: GTGGTAATGATGCCTGTGGCAAACACAAACACCTAC...CTGTGCAAACTCCCATGTTCTAGTTGCTGTTAGCATCCCCTTTGTTGCTGTCTG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000036615.7 |
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| 3UTR-3UTR TCA 90 bp | CCTTTAATCCCAGCACTCAGGAGGCAGAGGCAGATGAATCTCTTTCTGTGTTCAAAAAGGCATCAAATATaGAGTGTTCTCCAGCCCTAC | + |
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Preference number: 2 (lower is better) Translates to: PLIPALRRQRQMNLFLCSKRHQI*SVLQPY Trigger: GTAGGGCTGGAGAACACTTCATATTTGATGCCTTTT...TGAACACAGAAAGAGATTCATCTGCCTCTGCCTCCTGAGTGCTGGGATTAAAGG 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000036615.7 |
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| 3UTR-3UTR CCA 90 bp | CCTTTAATCCCAGCACTCAGGAGGCAGAGGCAGATGAATCTCTTTCTGTGTTCAACTCAGGAATGTTACTaGGAAAGAGAGACAGCCTTA | + |
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Preference number: 2 (lower is better) Translates to: PLIPALRRQRQMNLFLCSTQECY*ERETAL Trigger: TAAGGCTGTCTCTCTTTCCCAGTAACATTCCTGAGT...TGAACACAGAAAGAGATTCATCTGCCTCTGCCTCCTGAGTGCTGGGATTAAAGG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000036615.7 |
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| 3UTR-3UTR CCA 90 bp | CCTTTAATCCCAGCACTCAGGAGGCAGAGGCAGATGAATCTCTTTCTGTGTTCAGCAGCCATTCACATTTaGACTTCTAATCTCTGTTGC | + |
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Preference number: 2 (lower is better) Translates to: PLIPALRRQRQMNLFLCSAAIHI*TSNLCC Trigger: GCAACAGAGATTAGAAGTCCAAATGTGAATGGCTGC...TGAACACAGAAAGAGATTCATCTGCCTCTGCCTCCTGAGTGCTGGGATTAAAGG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000036615.7 |
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| 3UTR-3UTR TCA 90 bp | CTTCTCCCTTTCTCCAGTGTTGAAGGCAGTTCTGATTTAGCTAGAAATGAAGTAAAAGACCAAGCCCTGTaGAGACAGACAGTGCCTGTA | + |
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Preference number: 2 (lower is better) Translates to: LLPFSSVEGSSDLARNEVKDQAL*RQTVPV Trigger: TACAGGCACTGTCTGTCTTCACAGGGCTTGGTCTTT...TACTTCATTTCTAGCTAAATCAGAACTGCCTTCAACACTGGAGAAAGGGAGAAG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000036615.7 |
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| 3UTR-3UTR TCA 90 bp | CTTCTCCCTTTCTCCAGTGTTGAAGGCAGTTCTGATTTAGCTAGAAATGAAGTAGGTGTTCCCAGGTTCTaGTTTCGTTCTCTAAATCAC | + |
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Preference number: 2 (lower is better) Translates to: LLPFSSVEGSSDLARNEVGVPRF*FRSLNH Trigger: GTGATTTAGAGAACGAAATCAGAACCTGGGAACACC...TACTTCATTTCTAGCTAAATCAGAACTGCCTTCAACACTGGAGAAAGGGAGAAG 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000036615.7 |
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| 3UTR-3UTR GCA 90 bp | CTTCTCCCTTTCTCCAGTGTTGAAGGCAGTTCTGATTTAGCTAGAAATGAAGTATTCTCTAAATCACTCTaGCTCTTCAATGCCTGGGAA | + |
|
Preference number: 2 (lower is better) Translates to: LLPFSSVEGSSDLARNEVFSKSL*LFNAWE Trigger: TTCCCAGGCATTGAAGAGGCAGAGTGATTTAGAGAA...TACTTCATTTCTAGCTAAATCAGAACTGCCTTCAACACTGGAGAAAGGGAGAAG 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000036615.7 |
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| 3UTR-3UTR GCA 90 bp | GCAGACATGAAGAGGGCCACCTTTGTTATTAAATACACAAGAATGAACTTGTCCCAGATATCCATGTCATaGAAGTACAACACTAAGATA | + |
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Preference number: 2 (lower is better) Translates to: ADMKRATFVIKYTRMNLSQISMS*KYNTKI Trigger: TATCTTAGTGTTGTACTTGCATGACATGGATATCTG...GGACAAGTTCATTCTTGTGTATTTAATAACAAAGGTGGCCCTCTTCATGTCTGC 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000036615.7 |
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| 3UTR-3UTR CAA 90 bp | CAGACAGCAACAAAGGGGATGCTAACAGCAACTAGAACATGGGAGTTTGCACAGGCTCAACTGCCAGGTTaGTCCACAATCAGTGAGGGA | + |
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Preference number: 3 (lower is better) Translates to: QTATKGMLTATRTWEFAQAQLPG*STISEG Trigger: TCCCTCACTGATTGTGGACAAACCTGGCAGTTGAGC...CTGTGCAAACTCCCATGTTCTAGTTGCTGTTAGCATCCCCTTTGTTGCTGTCTG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000036615.7 |
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| 3UTR CCA 72 bp | CTCTGTTCCCTTCTGACCCCTGCAGCCATTCACATTTaGACTTCTAATCTCTGTTGCGCAGTACTTCTCCCT | + |
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Preference number: 3 (lower is better) Translates to: LCSLLTPAAIHI*TSNLCCAVLLP Trigger: AGGGAGAAGTACTGCGCAACAGAGATTAGAAGTCCAAATGTGAATGGCTGCAGGGGTCAGAAGGGAACAGAG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000036615.7 |
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| 3UTR CCA 72 bp | GTGTGTCAAAGCAGCCAGTTTAATGCCAATCCACTCTaGGCTCACTGCAACAGCAGAAGTCTCCTTCCTTTC | + |
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Preference number: 3 (lower is better) Translates to: VCQSSQFNANPL*AHCNSRSLLPF Trigger: GAAAGGAAGGAGACTTCTGCTGTTGCAGTGAGCCCAGAGTGGATTGGCATTAAACTGGCTGCTTTGACACAC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000036615.7 |
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| 3UTR CCA 72 bp | AGGCAGATGAATCTCTTTCTGTGTTCAAGGCCAGCCTaGTCTACAGAGCAAGTTCTAGGAGAGCCAAAGCTA | + |
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Preference number: 3 (lower is better) Translates to: RQMNLFLCSRPA*STEQVLGEPKL Trigger: TAGCTTTGGCTCTCCTAGAACTTGCTCTGTAGACCAGGCTGGCCTTGAACACAGAAAGAGATTCATCTGCCT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000036615.7 |
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| 3UTR-3UTR CAA 90 bp | CAGACAGCAACAAAGGGGATGCTAACAGCAACTAGAACATGGGAGTTTGCACAGGAGACTGAAGCTGTCTaGAACAGTAGCCAACCTCAA | + |
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Preference number: 3 (lower is better) Translates to: QTATKGMLTATRTWEFAQETEAV*NSSQPQ Trigger: TTGAGGTTGGCTACTGTTCAAGACAGCTTCAGTCTC...CTGTGCAAACTCCCATGTTCTAGTTGCTGTTAGCATCCCCTTTGTTGCTGTCTG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000036615.7 |
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| 3UTR CCA 72 bp | ACAGCAACAAAGGGGATGCTAACAGCAACTAGAACATaGGAGTTTGCACAGGGATACGGCATAATTGACTGC | + |
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Preference number: 3 (lower is better) Translates to: TATKGMLTATRT*EFAQGYGIIDC Trigger: GCAGTCAATTATGCCGTATCCCTGTGCAAACTCCCATGTTCTAGTTGCTGTTAGCATCCCCTTTGTTGCTGT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000036615.7 |
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| 3UTR TCA 72 bp | GTGAAGACAGACAGTGCCTGTAGGGAGGAGCAGACATaGAGAGGGCCACCTTTGTTATTAAATACACAAGAA | + |
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Preference number: 3 (lower is better) Translates to: VKTDSACREEQT*RGPPLLLNTQE Trigger: TTCTTGTGTATTTAATAACAAAGGTGGCCCTCTTCATGTCTGCTCCTCCCTACAGGCACTGTCTGTCTTCAC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000036615.7 |
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| 3UTR-3UTR CAA 90 bp | CCTTTAATCCCAGCACTCAGGAGGCAGAGGCAGATGAATCTCTTTCTGTGTTCATACACAAGAATGAACTaGTCCTCAGATACCAGATAT | + |
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Preference number: 3 (lower is better) Translates to: PLIPALRRQRQMNLFLCSYTRMN*SSDTRY Trigger: ATATCTGGTATCTGAGGACAAGTTCATTCTTGTGTA...TGAACACAGAAAGAGATTCATCTGCCTCTGCCTCCTGAGTGCTGGGATTAAAGG 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000036615.7 |
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| 3UTR TCA 72 bp | TTTACATGGAATGTGGTAGAGAGACTGAAGCTGTCTTaGACAGTAGCCAACCTCAAGGTCTGTATTCTGCAT | + |
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Preference number: 3 (lower is better) Translates to: FTWNVVERLKLS*TVANLKVCILH Trigger: ATGCAGAATACAGACCTTGAGGTTGGCTACTGTTCAAGACAGCTTCAGTCTCTCTACCACATTCCATGTAAA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000036615.7 |
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| CDS-3UTR TCA 90 bp | CGGTTTTCACAAGTGGCAGCAGAAAGACCAAGCCCTGTGAAGACAGACAGTGCCCACTGCCACAGCTTCTaGCAAACATCCCAGGGGATA | + |
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Preference number: 4 (lower is better) Translates to: RFSQVAAERPSPVKTDSAHCHSF*QTSQGI Trigger: TATCCCCTGGGATGTTTGTCAGAAGCTGTGGCAGTG...GGCACTGTCTGTCTTCACAGGGCTTGGTCTTTCTGCTGCCACTTGTGAAAACCG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000036615.7 |
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| CDS-3UTR GCA 90 bp | CGGTTTTCACAAGTGGCAGCAGAAAGACCAAGCCCTGTGAAGACAGACAGTGCCACTGTGATGTTCACCTaGCTCTGGGTCAGCCTGTAC | + |
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Preference number: 4 (lower is better) Translates to: RFSQVAAERPSPVKTDSATVMFT*LWVSLY Trigger: GTACAGGCTGACCCAGAGGCAGGTGAACATCACAGT...GGCACTGTCTGTCTTCACAGGGCTTGGTCTTTCTGCTGCCACTTGTGAAAACCG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000036615.7 |
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| CDS-3UTR TCA 90 bp | CGGTTTTCACAAGTGGCAGCAGAAAGACCAAGCCCTGTGAAGACAGACAGTGCCCGTGTCCCTGAGCTTTaGAATGCAGCACATTGTCTG | + |
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Preference number: 4 (lower is better) Translates to: RFSQVAAERPSPVKTDSARVPEL*NAAHCL Trigger: CAGACAATGTGCTGCATTTCAAAGCTCAGGGACACG...GGCACTGTCTGTCTTCACAGGGCTTGGTCTTTCTGCTGCCACTTGTGAAAACCG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000036615.7 |
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| CDS-3UTR GCA 90 bp | CGGTTTTCACAAGTGGCAGCAGAAAGACCAAGCCCTGTGAAGACAGACAGTGCCAATGGGCGCTTCTCTTaGTTGGTGAGTCTTTCCCAC | + |
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Preference number: 4 (lower is better) Translates to: RFSQVAAERPSPVKTDSANGRFS*LVSLSH Trigger: GTGGGAAAGACTCACCAAGCAAGAGAAGCGCCCATT...GGCACTGTCTGTCTTCACAGGGCTTGGTCTTTCTGCTGCCACTTGTGAAAACCG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000036615.7 |
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| CDS-3UTR GCA 90 bp | CGGTTTTCACAAGTGGCAGCAGAAAGACCAAGCCCTGTGAAGACAGACAGTGCCGTCCATACCGCCTCCTaGGCTGTTTATAAAGGTGAC | + |
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Preference number: 4 (lower is better) Translates to: RFSQVAAERPSPVKTDSAVHTAS*AVYKGD Trigger: GTCACCTTTATAAACAGCGCAGGAGGCGGTATGGAC...GGCACTGTCTGTCTTCACAGGGCTTGGTCTTTCTGCTGCCACTTGTGAAAACCG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000036615.7 |
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| CDS-3UTR CCA 90 bp | CAGACAGCAACAAAGGGGATGCTAACAGCAACTAGAACATGGGAGTTTGCACAGGGCGTTCTTCCTCCTTaGCTCTCAGCTCCATTTCCG | + |
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Preference number: 4 (lower is better) Translates to: QTATKGMLTATRTWEFAQGVLPP*LSAPFP Trigger: CGGAAATGGAGCTGAGAGCCAAGGAGGAAGAACGCC...CTGTGCAAACTCCCATGTTCTAGTTGCTGTTAGCATCCCCTTTGTTGCTGTCTG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000036615.7 |
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| CDS-3UTR CCA 90 bp | CGGTTTTCACAAGTGGCAGCAGAAAGACCAAGCCCTGTGAAGACAGACAGTGCCTTTCTTCCAAGAAACTaGATGAGAGCAGGTAGCACC | + |
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Preference number: 4 (lower is better) Translates to: RFSQVAAERPSPVKTDSAFLPRN*MRAGST Trigger: GGTGCTACCTGCTCTCATCCAGTTTCTTGGAAGAAA...GGCACTGTCTGTCTTCACAGGGCTTGGTCTTTCTGCTGCCACTTGTGAAAACCG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000036615.7 |
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| CDS-3UTR TCA 90 bp | CCTTTAATCCCAGCACTCAGGAGGCAGAGGCAGATGAATCTCTTTCTGTGTTCAAGTCTTTCCCACCAATaGCTCCCCTTCTTCTGGACT | + |
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Preference number: 4 (lower is better) Translates to: PLIPALRRQRQMNLFLCSSLSHQ*LPFFWT Trigger: AGTCCAGAAGAAGGGGAGTCATTGGTGGGAAAGACT...TGAACACAGAAAGAGATTCATCTGCCTCTGCCTCCTGAGTGCTGGGATTAAAGG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000036615.7 |
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| CDS-3UTR TCA 90 bp | CCTTTAATCCCAGCACTCAGGAGGCAGAGGCAGATGAATCTCTTTCTGTGTTCAGCTTCTCTTGCTTGGTaGGTCTTTCCCACCAATGAC | + |
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Preference number: 4 (lower is better) Translates to: PLIPALRRQRQMNLFLCSASLAW*VFPTND Trigger: GTCATTGGTGGGAAAGACTCACCAAGCAAGAGAAGC...TGAACACAGAAAGAGATTCATCTGCCTCTGCCTCCTGAGTGCTGGGATTAAAGG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000036615.7 |
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| CDS-3UTR CCA 90 bp | GCAGACATGAAGAGGGCCACCTTTGTTATTAAATACACAAGAATGAACTTGTCCATGTTCACCTGCCTCTaGGTCAGCCTGTACGCCGGC | + |
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Preference number: 4 (lower is better) Translates to: ADMKRATFVIKYTRMNLSMFTCL*VSLYAG Trigger: GCCGGCGTACAGGCTGACCCAGAGGCAGGTGAACAT...GGACAAGTTCATTCTTGTGTATTTAATAACAAAGGTGGCCCTCTTCATGTCTGC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000036615.7 |
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| CDS-3UTR CCA 90 bp | CCTTTAATCCCAGCACTCAGGAGGCAGAGGCAGATGAATCTCTTTCTGTGTTCACGACTCGTTGAATACTaGAATGGACTGGATCACTGC | + |
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Preference number: 4 (lower is better) Translates to: PLIPALRRQRQMNLFLCSRLVEY*NGLDHC Trigger: GCAGTGATCCAGTCCATTCCAGTATTCAACGAGTCG...TGAACACAGAAAGAGATTCATCTGCCTCTGCCTCCTGAGTGCTGGGATTAAAGG 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000036615.7 |
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| CDS-3UTR CCA 90 bp | CAGACAGCAACAAAGGGGATGCTAACAGCAACTAGAACATGGGAGTTTGCACAGAATACTGGAATGGACTaGATCACTGCCACAGCTTCT | + |
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Preference number: 4 (lower is better) Translates to: QTATKGMLTATRTWEFAQNTGMD*ITATAS Trigger: AGAAGCTGTGGCAGTGATCCAGTCCATTCCAGTATT...CTGTGCAAACTCCCATGTTCTAGTTGCTGTTAGCATCCCCTTTGTTGCTGTCTG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000036615.7 |
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| CDS-3UTR TCA 90 bp | CTTCTCCCTTTCTCCAGTGTTGAAGGCAGTTCTGATTTAGCTAGAAATGAAGTATTGGCACCGTGTCCCTaGGCTTTGAAATGCAGCACA | + |
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Preference number: 4 (lower is better) Translates to: LLPFSSVEGSSDLARNEVLAPCP*ALKCST Trigger: TGTGCTGCATTTCAAAGCTCAGGGACACGGTGCCAA...TACTTCATTTCTAGCTAAATCAGAACTGCCTTCAACACTGGAGAAAGGGAGAAG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000036615.7 |
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| CDS-3UTR TCA 90 bp | AACCCTTATATCAGTACAAGAAGTAGAAGAGTAGGAATCATAGACTCTGCTCAACCTTCTTCTGGACTGTaGTGTTCACCTGCCTCTGGG | + |
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Preference number: 4 (lower is better) Translates to: NPYISTRSRRVGIIDSAQPSSGL*CSPASG Trigger: CCCAGAGGCAGGTGAACATCACAGTCCAGAAGAAGG...TTGAGCAGAGTCTATGATTCCTACTCTTCTACTTCTTGTACTGATATAAGGGTT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000036615.7 |
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| CDS-3UTR GCA 90 bp | CCTTTAATCCCAGCACTCAGGAGGCAGAGGCAGATGAATCTCTTTCTGTGTTCAGCATTTCTTCCATGGTaGCGAAAACAAGAAACAGAA | + |
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Preference number: 4 (lower is better) Translates to: PLIPALRRQRQMNLFLCSAFLPW*RKQETE Trigger: TTCTGTTTCTTGTTTTCGGCACCATGGAAGAAATGC...TGAACACAGAAAGAGATTCATCTGCCTCTGCCTCCTGAGTGCTGGGATTAAAGG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000036615.7 |
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| CDS-3UTR CCA 90 bp | CAGACAGCAACAAAGGGGATGCTAACAGCAACTAGAACATGGGAGTTTGCACAGCATCTTCACTGGATATaGCAAAGTAAAACTGAACCT | + |
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Preference number: 4 (lower is better) Translates to: QTATKGMLTATRTWEFAQHLHWI*QSKTEP Trigger: AGGTTCAGTTTTACTTTGCCATATCCAGTGAAGATG...CTGTGCAAACTCCCATGTTCTAGTTGCTGTTAGCATCCCCTTTGTTGCTGTCTG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000036615.7 |
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| CDS-3UTR CCA 90 bp | AACCCTTATATCAGTACAAGAAGTAGAAGAGTAGGAATCATAGACTCTGCTCAAAGACATTGTCTCCTTTaGCACCGTGTCCCTGAGCTT | + |
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Preference number: 4 (lower is better) Translates to: NPYISTRSRRVGIIDSAQRHCLL*HRVPEL Trigger: AAGCTCAGGGACACGGTGCCAAAGGAGACAATGTCT...TTGAGCAGAGTCTATGATTCCTACTCTTCTACTTCTTGTACTGATATAAGGGTT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000036615.7 |
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| CDS-3UTR GCA 90 bp | AACCCTTATATCAGTACAAGAAGTAGAAGAGTAGGAATCATAGACTCTGCTCAATCCAGTCCATGTCAATaGAGGAGAGCATGTAGAAGG | + |
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Preference number: 4 (lower is better) Translates to: NPYISTRSRRVGIIDSAQSSPCQ*RRACRR Trigger: CCTTCTACATGCTCTCCTGCATTGACATGGACTGGA...TTGAGCAGAGTCTATGATTCCTACTCTTCTACTTCTTGTACTGATATAAGGGTT 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000036615.7 |
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| CDS-3UTR GCA 90 bp | AACCCTTATATCAGTACAAGAAGTAGAAGAGTAGGAATCATAGACTCTGCTCAAACCACAGCTTTGTTTTaGATTTCTTCCATGGTGCCG | + |
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Preference number: 4 (lower is better) Translates to: NPYISTRSRRVGIIDSAQTTALF*ISSMVP Trigger: CGGCACCATGGAAGAAATGCAAAACAAAGCTGTGGT...TTGAGCAGAGTCTATGATTCCTACTCTTCTACTTCTTGTACTGATATAAGGGTT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000036615.7 |
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| CDS-3UTR CCA 90 bp | AACCCTTATATCAGTACAAGAAGTAGAAGAGTAGGAATCATAGACTCTGCTCAAACTAGTGCCAGCATCTaGCAGAAATACATCATGTCA | + |
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Preference number: 4 (lower is better) Translates to: NPYISTRSRRVGIIDSAQTSASI*QKYIMS Trigger: TGACATGATGTATTTCTGCCAGATGCTGGCACTAGT...TTGAGCAGAGTCTATGATTCCTACTCTTCTACTTCTTGTACTGATATAAGGGTT 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000036615.7 |
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| CDS-3UTR TCA 90 bp | AACCCTTATATCAGTACAAGAAGTAGAAGAGTAGGAATCATAGACTCTGCTCAACTTCCCTTTCTAGTCTaGGTTTATTTAGGCGTTCTT | + |
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Preference number: 4 (lower is better) Translates to: NPYISTRSRRVGIIDSAQLPFLV*VYLGVL Trigger: AAGAACGCCTAAATAAACTCAGACTAGAAAGGGAAG...TTGAGCAGAGTCTATGATTCCTACTCTTCTACTTCTTGTACTGATATAAGGGTT 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000036615.7 |
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| CDS-3UTR CCA 90 bp | CTTCTCCCTTTCTCCAGTGTTGAAGGCAGTTCTGATTTAGCTAGAAATGAAGTAGACTTTCATCTTCACTaGATATGGCAAAGTAAAACT | + |
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Preference number: 4 (lower is better) Translates to: LLPFSSVEGSSDLARNEVDFHLH*IWQSKT Trigger: AGTTTTACTTTGCCATATCCAGTGAAGATGAAAGTC...TACTTCATTTCTAGCTAAATCAGAACTGCCTTCAACACTGGAGAAAGGGAGAAG 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000036615.7 |
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| CDS-3UTR CCA 90 bp | AACCCTTATATCAGTACAAGAAGTAGAAGAGTAGGAATCATAGACTCTGCTCAATTTGCATTTCTTCCATaGTGCCGAAAACAAGAAACA | + |
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Preference number: 4 (lower is better) Translates to: NPYISTRSRRVGIIDSAQFAFLP*CRKQET Trigger: TGTTTCTTGTTTTCGGCACCATGGAAGAAATGCAAA...TTGAGCAGAGTCTATGATTCCTACTCTTCTACTTCTTGTACTGATATAAGGGTT 37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000036615.7 |
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| CDS CCA 90 bp | ATCAGATTCATCCAGCCAGCGATCAAAGTCAGGGGCCAAAAACAATaGGCGCTTCTCTTGCTTGGTGAGTCTTTCCCACCAATGACTCCC | + |
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Preference number: 5 (lower is better) Translates to: IRFIQPAIKVRGQKQ*ALLLLGESFPPMTP Trigger: GGGAGTCATTGGTGGGAAAGACTCACCAAGCAAGAGAAGCGCCCATTGTTTTTGGCCCCTGACTTTGATCGCTGGCTGGATGAATCTGAT 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000036615.7 |
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| CDS-3UTR CAA 90 bp | CCTTTAATCCCAGCACTCAGGAGGCAGAGGCAGATGAATCTCTTTCTGTGTTCAAGGCGTTCTTCCTCCTaGGCTCTCAGCTCCATTTCC | + |
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Preference number: 5 (lower is better) Translates to: PLIPALRRQRQMNLFLCSRRSSS*ALSSIS Trigger: GGAAATGGAGCTGAGAGCCAAGGAGGAAGAACGCCT...TGAACACAGAAAGAGATTCATCTGCCTCTGCCTCCTGAGTGCTGGGATTAAAGG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000036615.7 |
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| CDS-3UTR CAA 90 bp | CCTTTAATCCCAGCACTCAGGAGGCAGAGGCAGATGAATCTCTTTCTGTGTTCAAACCGCACTGTGAGGTaGACAAAGATCCAGGAGAAC | + |
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Preference number: 5 (lower is better) Translates to: PLIPALRRQRQMNLFLCSNRTVR*TKIQEN Trigger: GTTCTCCTGGATCTTTGTCAACCTCACAGTGCGGTT...TGAACACAGAAAGAGATTCATCTGCCTCTGCCTCCTGAGTGCTGGGATTAAAGG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000036615.7 |
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| CDS GCA 90 bp | AACCGCACTGTGAGGTTGACAAAGATCCAGGAGAACCCCAGGAGCTaGACAAGGTTGTACATGAACAGGTACCCTTTCTTCAAGTTTGTA | + |
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Preference number: 5 (lower is better) Translates to: NRTVRLTKIQENPRS*TRLYMNRYPFFKFV Trigger: TACAAACTTGAAGAAAGGGTACCTGTTCATGTACAACCTTGTGCAGCTCCTGGGGTTCTCCTGGATCTTTGTCAACCTCACAGTGCGGTT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000036615.7 |
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| CDS CCA 90 bp | AAAGTAAAACTGAACCTTCCCGACTCGTTGAATACTGGAATGGACTaGATCACTGCCACAGCTTCTGACAAACATCCCAGGGGATATAAC | + |
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Preference number: 5 (lower is better) Translates to: KVKLNLPDSLNTGMD*ITATASDKHPRGYN Trigger: GTTATATCCCCTGGGATGTTTGTCAGAAGCTGTGGCAGTGATCCAGTCCATTCCAGTATTCAACGAGTCGGGAAGGTTCAGTTTTACTTT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000036615.7 |
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| CDS-3UTR CAA 90 bp | CCTTTAATCCCAGCACTCAGGAGGCAGAGGCAGATGAATCTCTTTCTGTGTTCATTGAAATGCAGCACATaGTCTGTGATGCTGATAGCA | + |
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Preference number: 5 (lower is better) Translates to: PLIPALRRQRQMNLFLCSLKCST*SVMLIA Trigger: TGCTATCAGCATCACAGACAATGTGCTGCATTTCAA...TGAACACAGAAAGAGATTCATCTGCCTCTGCCTCCTGAGTGCTGGGATTAAAGG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000036615.7 |
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| CDS-3UTR CAA 90 bp | AACCCTTATATCAGTACAAGAAGTAGAAGAGTAGGAATCATAGACTCTGCTCAAACCCCAATCGCAGCATaGAGGGTTTCCACTAGTGCC | + |
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Preference number: 5 (lower is better) Translates to: NPYISTRSRRVGIIDSAQTPIAA*RVSTSA Trigger: GGCACTAGTGGAAACCCTCAATGCTGCGATTGGGGT...TTGAGCAGAGTCTATGATTCCTACTCTTCTACTTCTTGTACTGATATAAGGGTT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000036615.7 |
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| CDS-3UTR CAA 90 bp | AACCCTTATATCAGTACAAGAAGTAGAAGAGTAGGAATCATAGACTCTGCTCAAAACCACAGCTTTGTTTaGCATTTCTTCCATGGTGCC | + |
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Preference number: 5 (lower is better) Translates to: NPYISTRSRRVGIIDSAQNHSFV*HFFHGA Trigger: GGCACCATGGAAGAAATGCAAAACAAAGCTGTGGTT...TTGAGCAGAGTCTATGATTCCTACTCTTCTACTTCTTGTACTGATATAAGGGTT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000036615.7 |
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| CDS CCA 90 bp | AACTTGAAGGAAGAAGGAAAATCTGACTTTCATCTTCACTGGATATaGCAAAGTAAAACTGAACCTTCCCGACTCGTTGAATACTGGAAT | + |
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Preference number: 5 (lower is better) Translates to: NLKEEGKSDFHLHWI*QSKTEPSRLVEYWN Trigger: ATTCCAGTATTCAACGAGTCGGGAAGGTTCAGTTTTACTTTGCCATATCCAGTGAAGATGAAAGTCAGATTTTCCTTCTTCCTTCAAGTT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000036615.7 |
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| CDS CCA 90 bp | GAGATAAACTTGAAGGAAGAAGGAAAATCTGACTTTCATCTTCACTaGATATGGCAAAGTAAAACTGAACCTTCCCGACTCGTTGAATAC | + |
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Preference number: 5 (lower is better) Translates to: EINLKEEGKSDFHLH*IWQSKTEPSRLVEY Trigger: GTATTCAACGAGTCGGGAAGGTTCAGTTTTACTTTGCCATATCCAGTGAAGATGAAAGTCAGATTTTCCTTCTTCCTTCAAGTTTATCTC 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000036615.7 |
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| CDS CAA 72 bp | GGTAGCACCGGGGTACTTGTGACCCCAATCGCAGCATaGAGGGTTTCCACTAGTGCCAGCATCTGGCAGAAA | + |
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Preference number: 6 (lower is better) Translates to: GSTGVLVTPIAA*RVSTSASIWQK Trigger: TTTCTGCCAGATGCTGGCACTAGTGGAAACCCTCAATGCTGCGATTGGGGTCACAAGTACCCCGGTGCTACC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000036615.7 |
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| CDS CCA 72 bp | ATCCAGCCAGCGATCAAAGTCAGGGGCCAAAAACAATaGGCGCTTCTCTTGCTTGGTGAGTCTTTCCCACCA | + |
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Preference number: 6 (lower is better) Translates to: IQPAIKVRGQKQ*ALLLLGESFPP Trigger: TGGTGGGAAAGACTCACCAAGCAAGAGAAGCGCCCATTGTTTTTGGCCCCTGACTTTGATCGCTGGCTGGAT 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000036615.7 |
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| CDS CAA 90 bp | ATGAGAGCAGGTAGCACCGGGGTACTTGTGACCCCAATCGCAGCATaGAGGGTTTCCACTAGTGCCAGCATCTGGCAGAAATACATCATG | + |
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Preference number: 6 (lower is better) Translates to: MRAGSTGVLVTPIAA*RVSTSASIWQKYIM Trigger: CATGATGTATTTCTGCCAGATGCTGGCACTAGTGGAAACCCTCAATGCTGCGATTGGGGTCACAAGTACCCCGGTGCTACCTGCTCTCAT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000036615.7 |
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| CDS CCA 72 bp | CTGAACCTTCCCGACTCGTTGAATACTGGAATGGACTaGATCACTGCCACAGCTTCTGACAAACATCCCAGG | + |
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Preference number: 6 (lower is better) Translates to: LNLPDSLNTGMD*ITATASDKHPR Trigger: CCTGGGATGTTTGTCAGAAGCTGTGGCAGTGATCCAGTCCATTCCAGTATTCAACGAGTCGGGAAGGTTCAG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000036615.7 |
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| CDS GCA 72 bp | GTGAGGTTGACAAAGATCCAGGAGAACCCCAGGAGCTaGACAAGGTTGTACATGAACAGGTACCCTTTCTTC | + |
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Preference number: 6 (lower is better) Translates to: VRLTKIQENPRS*TRLYMNRYPFF Trigger: GAAGAAAGGGTACCTGTTCATGTACAACCTTGTGCAGCTCCTGGGGTTCTCCTGGATCTTTGTCAACCTCAC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000036615.7 |
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| CDS CAA 72 bp | GGATATGGCAAAGTAAAACTGAACCTTCCCGACTCGTaGAATACTGGAATGGACTGGATCACTGCCACAGCT | + |
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Preference number: 6 (lower is better) Translates to: GYGKVKLNLPDS*NTGMDWITATA Trigger: AGCTGTGGCAGTGATCCAGTCCATTCCAGTATTCAACGAGTCGGGAAGGTTCAGTTTTACTTTGCCATATCC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000036615.7 |
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| CDS CAA 90 bp | GTGAGGTTGACAAAGATCCAGGAGAACCCCAGGAGCTGCACAAGGTaGTACATGAACAGGTACCCTTTCTTCAAGTTTGTAAGAGTTTCA | + |
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Preference number: 6 (lower is better) Translates to: VRLTKIQENPRSCTR*YMNRYPFFKFVRVS Trigger: TGAAACTCTTACAAACTTGAAGAAAGGGTACCTGTTCATGTACAACCTTGTGCAGCTCCTGGGGTTCTCCTGGATCTTTGTCAACCTCAC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000036615.7 |
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| CDS CAA 72 bp | ACAAAGATCCAGGAGAACCCCAGGAGCTGCACAAGGTaGTACATGAACAGGTACCCTTTCTTCAAGTTTGTA | + |
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Preference number: 6 (lower is better) Translates to: TKIQENPRSCTR*YMNRYPFFKFV Trigger: TACAAACTTGAAGAAAGGGTACCTGTTCATGTACAACCTTGTGCAGCTCCTGGGGTTCTCCTGGATCTTTGT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000036615.7 |
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| CDS CAA 90 bp | ATCTTCACTGGATATGGCAAAGTAAAACTGAACCTTCCCGACTCGTaGAATACTGGAATGGACTGGATCACTGCCACAGCTTCTGACAAA | + |
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Preference number: 6 (lower is better) Translates to: IFTGYGKVKLNLPDS*NTGMDWITATASDK Trigger: TTTGTCAGAAGCTGTGGCAGTGATCCAGTCCATTCCAGTATTCAACGAGTCGGGAAGGTTCAGTTTTACTTTGCCATATCCAGTGAAGAT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000036615.7 |
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| CDS CCA 72 bp | GAAGAAGGAAAATCTGACTTTCATCTTCACTGGATATaGCAAAGTAAAACTGAACCTTCCCGACTCGTTGAA | + |
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Preference number: 6 (lower is better) Translates to: EEGKSDFHLHWI*QSKTEPSRLVE Trigger: TTCAACGAGTCGGGAAGGTTCAGTTTTACTTTGCCATATCCAGTGAAGATGAAAGTCAGATTTTCCTTCTTC 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000036615.7 |
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