Pregenerated sensors for HACD2 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000035376Ensembl transcript IDs: ENSMUST00000061156.10
Found 69 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | CTTTCTGTTTTCAAAAGGAGTTTGCCGTGCGCACTTTGGGAGCTGTaGGCTGGGTGGGCCTCGGCTTTGCCTGTCTCCTCCAAGCCTATC | + |
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Preference number: 1 (lower is better) Translates to: LSVFKRSLPCALWEL*AGWASALPVSSKPI Trigger: GATAGGCTTGGAGGAGACAGGCAAAGCCGAGGCCCACCCAGCTCACAGCTCCCAAAGTGCGCACGGCAAACTCCTTTTGAAAACAGAAAG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000061156.10 |
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| 3UTR CCA 90 bp | TGTTTTCAAAAGGAGTTTGCCGTGCGCACTTTGGGAGCTGTGAGCTaGGTGGGCCTCGGCTTTGCCTGTCTCCTCCAAGCCTATCCTAAG | + |
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Preference number: 1 (lower is better) Translates to: CFQKEFAVRTLGAVS*VGLGFACLLQAYPK Trigger: CTTAGGATAGGCTTGGAGGAGACAGGCAAAGCCGAGGCCCACCCAGCTCACAGCTCCCAAAGTGCGCACGGCAAACTCCTTTTGAAAACA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000061156.10 |
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| 3UTR GCA 90 bp | GTTGCCTCCTGTCTTTCTGGCCGGGCACCATCCACACTGTCCTCTTaGTCAGTTTGCTTTAGACTTTCCTGTCTGGGAGGACAGTGCTTT | + |
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Preference number: 1 (lower is better) Translates to: VASCLSGRAPSTLSS*SVCFRLSCLGGQCF Trigger: AAAGCACTGTCCTCCCAGACAGGAAAGTCTAAAGCAAACTGAGCAAGAGGACAGTGTGGATGGTGCCCGGCCAGAAAGACAGGAGGCAAC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000061156.10 |
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| 3UTR TCA 90 bp | CAGGCACCCAGCTCTCCCCCTCACCGTGGCTTGTTAGAATCTGACTaGAGCCGAGTTCCACACAAGGGTCTTTATAGTTTACACAGGCTT | + |
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Preference number: 1 (lower is better) Translates to: QAPSSPPHRGLLESD*SRVPHKGLYSLHRL Trigger: AAGCCTGTGTAAACTATAAAGACCCTTGTGTGGAACTCGGCTTCAGTCAGATTCTAACAAGCCACGGTGAGGGGGAGAGCTGGGTGCCTG 52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000061156.10 |
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| 3UTR TCA 90 bp | AGACACTGTCAGACAGGGCTATTGACAAGCAGCTGGCAGCTGCTGTaGTGCGTGGAGGGGACAGTACTACCTTTGGCTTTTCCTAGAACA | + |
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Preference number: 1 (lower is better) Translates to: RHCQTGLLTSSWQLL*CVEGTVLPLAFPRT Trigger: TGTTCTAGGAAAAGCCAAAGGTAGTACTGTCCCCTCCACGCATCACAGCAGCTGCCAGCTGCTTGTCAATAGCCCTGTCTGACAGTGTCT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000061156.10 |
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| 3UTR TCA 90 bp | GTTTGCTTTAGACTTTCCTGTCTGGGAGGACAGTGCTTTACTCCATaGCTAACTCCGTGGGGCCTTTATGATGGTGGTCCCAGCCTCAGC | + |
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Preference number: 1 (lower is better) Translates to: VCFRLSCLGGQCFTP*LTPWGLYDGGPSLS Trigger: GCTGAGGCTGGGACCACCATCATAAAGGCCCCACGGAGTTAGTCATGGAGTAAAGCACTGTCCTCCCAGACAGGAAAGTCTAAAGCAAAC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000061156.10 |
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| 3UTR CCA 90 bp | GCAGCTGGCAGCTGCTGTGATGCGTGGAGGGGACAGTACTACCTTTaGCTTTTCCTAGAACACATCTTGTCTCTGGACTTACAACTTAGT | + |
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Preference number: 1 (lower is better) Translates to: AAGSCCDAWRGQYYL*LFLEHILSLDLQLS Trigger: ACTAAGTTGTAAGTCCAGAGACAAGATGTGTTCTAGGAAAAGCCAAAGGTAGTACTGTCCCCTCCACGCATCACAGCAGCTGCCAGCTGC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000061156.10 |
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| 3UTR-3UTR TCA 90 bp | GAAAAGCAAGGCACGGTTGCCTCCTGTCTTTCTGGCCGGGCACCATCCACACTGTCCGTGGGGCCTTTATaGTGGTGGTCCCAGCCTCAG | + |
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Preference number: 2 (lower is better) Translates to: EKQGTVASCLSGRAPSTLSVGPL*WWSQPQ Trigger: CTGAGGCTGGGACCACCATCATAAAGGCCCCACGGA...CAGTGTGGATGGTGCCCGGCCAGAAAGACAGGAGGCAACCGTGCCTTGCTTTTC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000061156.10 |
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| 3UTR CAA 90 bp | CCGAACCTTGCTTTCTGTTTTCAAAAGGAGTTTGCCGTGCGCACTTaGGGAGCTGTGAGCTGGGTGGGCCTCGGCTTTGCCTGTCTCCTC | + |
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Preference number: 2 (lower is better) Translates to: PNLAFCFQKEFAVRT*GAVSWVGLGFACLL Trigger: GAGGAGACAGGCAAAGCCGAGGCCCACCCAGCTCACAGCTCCCAAAGTGCGCACGGCAAACTCCTTTTGAAAACAGAAAGCAAGGTTCGG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000061156.10 |
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| 3UTR-3UTR TCA 90 bp | GAAAAGCAAGGCACGGTTGCCTCCTGTCTTTCTGGCCGGGCACCATCCACACTGGTCCCAGCCTCAGCATaGCGCAGATTAGCCATACAA | + |
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Preference number: 2 (lower is better) Translates to: EKQGTVASCLSGRAPSTLVPASA*RRLAIQ Trigger: TTGTATGGCTAATCTGCGTCATGCTGAGGCTGGGAC...CAGTGTGGATGGTGCCCGGCCAGAAAGACAGGAGGCAACCGTGCCTTGCTTTTC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000061156.10 |
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| 3UTR-3UTR TCA 90 bp | GTTTGCCGTGCGCACTTTGGGAGCTGTGAGCTGGGTGGGCCTCGGCTTTGCCTGGCATATTTTGATCATTaGAAAGTCTGGTTTGGGGTG | + |
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Preference number: 2 (lower is better) Translates to: VCRAHFGSCELGGPRLCLAYFDH*KVWFGV Trigger: CACCCCAAACCAGACTTTTCAATGATCAAAATATGC...CAGGCAAAGCCGAGGCCCACCCAGCTCACAGCTCCCAAAGTGCGCACGGCAAAC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000061156.10 |
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| 3UTR-3UTR TCA 90 bp | GAAAAGCAAGGCACGGTTGCCTCCTGTCTTTCTGGCCGGGCACCATCCACACTGATTAGATGTCACACCTaGGGAGGCTGGATGTTCTCA | + |
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Preference number: 2 (lower is better) Translates to: EKQGTVASCLSGRAPSTLIRCHT*GGWMFS Trigger: TGAGAACATCCAGCCTCCTCAGGTGTGACATCTAAT...CAGTGTGGATGGTGCCCGGCCAGAAAGACAGGAGGCAACCGTGCCTTGCTTTTC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000061156.10 |
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| 3UTR-3UTR GCA 90 bp | ATTTCCTCCTCCTGTGTGATGAGACAGGCTTTGAGTCTGTCAGCAAGGCTCTTGCAGTTGGAGCACGGTTaGCCCTCAGACGGCAGCTCT | + |
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Preference number: 2 (lower is better) Translates to: ISSSCVMRQALSLSARLLQLEHG*PSDGSS Trigger: AGAGCTGCCGTCTGAGGGGCAACCGTGCTCCAACTG...CAAGAGCCTTGCTGACAGACTCAAAGCCTGTCTCATCACACAGGAGGAGGAAAT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000061156.10 |
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| 3UTR-3UTR GCA 90 bp | ATTTCCTCCTCCTGTGTGATGAGACAGGCTTTGAGTCTGTCAGCAAGGCTCTTGCAACCCAGCTTCTGCTaGAAGCCGCGAAGTCAGTTG | + |
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Preference number: 2 (lower is better) Translates to: ISSSCVMRQALSLSARLLQPSFC*KPRSQL Trigger: CAACTGACTTCGCGGCTTGCAGCAGAAGCTGGGTTG...CAAGAGCCTTGCTGACAGACTCAAAGCCTGTCTCATCACACAGGAGGAGGAAAT 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000061156.10 |
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| 3UTR-3UTR CCA 90 bp | CAGGTGGTTGCTGCGAGGGTGATGGCTGACTCTAGTTCTGACAAAAGAGCCACTCGCCATCATAGGAACTaGCAACTTCTGGTCAGAGCA | + |
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Preference number: 2 (lower is better) Translates to: QVVAARVMADSSSDKRATRHHRN*QLLVRA Trigger: TGCTCTGACCAGAAGTTGCCAGTTCCTATGATGGCG...AGTGGCTCTTTTGTCAGAACTAGAGTCAGCCATCACCCTCGCAGCAACCACCTG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000061156.10 |
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| 3UTR-3UTR GCA 90 bp | CAGGTGGTTGCTGCGAGGGTGATGGCTGACTCTAGTTCTGACAAAAGAGCCACTTGGCCAGTACATTTGTaGTCTGAGGAAGCTACATGG | + |
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Preference number: 2 (lower is better) Translates to: QVVAARVMADSSSDKRATWPVHL*SEEATW Trigger: CCATGTAGCTTCCTCAGAGCACAAATGTACTGGCCA...AGTGGCTCTTTTGTCAGAACTAGAGTCAGCCATCACCCTCGCAGCAACCACCTG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000061156.10 |
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| 3UTR-3UTR TCA 90 bp | AATAGAAATGTAAAGCCAACACAAGTGAAAAGCAAGGCACGGTTGCCTCCTGTCGTCAGACAGGGCTATTaGCAAGCAGCTGGCAGCTGC | + |
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Preference number: 2 (lower is better) Translates to: NRNVKPTQVKSKARLPPVVRQGY*QAAGSC Trigger: GCAGCTGCCAGCTGCTTGTCAATAGCCCTGTCTGAC...GACAGGAGGCAACCGTGCCTTGCTTTTCACTTGTGTTGGCTTTACATTTCTATT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000061156.10 |
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| 3UTR-3UTR GCA 90 bp | AATAGAAATGTAAAGCCAACACAAGTGAAAAGCAAGGCACGGTTGCCTCCTGTCAGCCACACCGCAGACTaGAACCCAGCTTCTGCTGCA | + |
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Preference number: 2 (lower is better) Translates to: NRNVKPTQVKSKARLPPVSHTAD*NPASAA Trigger: TGCAGCAGAAGCTGGGTTGCAGTCTGCGGTGTGGCT...GACAGGAGGCAACCGTGCCTTGCTTTTCACTTGTGTTGGCTTTACATTTCTATT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000061156.10 |
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| 3UTR-3UTR TCA 90 bp | CGAACCTTGCTTTCTGTTTTCAAAAGGAGTTTGCCGTGCGCACTTTGGGAGCTGTGGCTTGTTAGAATCTaGCTGAAGCCGAGTTCCACA | + |
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Preference number: 2 (lower is better) Translates to: RTLLSVFKRSLPCALWELWLVRI*LKPSST Trigger: TGTGGAACTCGGCTTCAGTCAGATTCTAACAAGCCA...CAGCTCCCAAAGTGCGCACGGCAAACTCCTTTTGAAAACAGAAAGCAAGGTTCG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000061156.10 |
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| 3UTR-3UTR TCA 90 bp | CAGGTGGTTGCTGCGAGGGTGATGGCTGACTCTAGTTCTGACAAAAGAGCCACTACTTTAATACACAGGTaGGCAAGGAAGTGCTGTGAA | + |
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Preference number: 2 (lower is better) Translates to: QVVAARVMADSSSDKRATTLIHR*ARKCCE Trigger: TTCACAGCACTTCCTTGCTCACCTGTGTATTAAAGT...AGTGGCTCTTTTGTCAGAACTAGAGTCAGCCATCACCCTCGCAGCAACCACCTG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000061156.10 |
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| 3UTR CAA 90 bp | TTTAATAGAAATGTAAAGCCAACACAAGTGAAAAGCAAGGCACGGTaGCCTCCTGTCTTTCTGGCCGGGCACCATCCACACTGTCCTCTT | + |
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Preference number: 2 (lower is better) Translates to: FNRNVKPTQVKSKAR*PPVFLAGHHPHCPL Trigger: AAGAGGACAGTGTGGATGGTGCCCGGCCAGAAAGACAGGAGGCAACCGTGCCTTGCTTTTCACTTGTGTTGGCTTTACATTTCTATTAAA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000061156.10 |
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| 3UTR-3UTR GCA 90 bp | CGAACCTTGCTTTCTGTTTTCAAAAGGAGTTTGCCGTGCGCACTTTGGGAGCTGGTGTACATTCTGTACTaGCAGATGAATGGAGGACAC | + |
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Preference number: 2 (lower is better) Translates to: RTLLSVFKRSLPCALWELVYILY*QMNGGH Trigger: GTGTCCTCCATTCATCTGGCAGTACAGAATGTACAC...CAGCTCCCAAAGTGCGCACGGCAAACTCCTTTTGAAAACAGAAAGCAAGGTTCG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000061156.10 |
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| 3UTR-3UTR CCA 90 bp | GGGCCTTTAATTACAGATTTCCTCCTCCTGTGTGATGAGACAGGCTTTGAGTCTCAGCAAGGCTCTTGCTaGCCAGTACATTTGTGCTCT | + |
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Preference number: 2 (lower is better) Translates to: GPLITDFLLLCDETGFESQQGSC*PVHLCS Trigger: AGAGCACAAATGTACTGGCCAGCAAGAGCCTTGCTG...AGACTCAAAGCCTGTCTCATCACACAGGAGGAGGAAATCTGTAATTAAAGGCCC 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000061156.10 |
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| 3UTR-3UTR CCA 90 bp | AGAACTGAGTATGGTTTTCAGGTTGGACCTCAGCAACACCAGGCTTTTAATAGAGGCAGCTCTTGGCACTaGGTGTACATTCTGTACTGC | + |
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Preference number: 2 (lower is better) Translates to: RTEYGFQVGPQQHQAFNRGSSWH*VYILYC Trigger: GCAGTACAGAATGTACACCCAGTGCCAAGAGCTGCC...TCTATTAAAAGCCTGGTGTTGCTGAGGTCCAACCTGAAAACCATACTCAGTTCT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000061156.10 |
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| 3UTR-3UTR TCA 90 bp | GGGCCTTTAATTACAGATTTCCTCCTCCTGTGTGATGAGACAGGCTTTGAGTCTTTGTTAGAATCTGACTaGAGCCGAGTTCCACACAAG | + |
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Preference number: 2 (lower is better) Translates to: GPLITDFLLLCDETGFESLLESD*SRVPHK Trigger: CTTGTGTGGAACTCGGCTTCAGTCAGATTCTAACAA...AGACTCAAAGCCTGTCTCATCACACAGGAGGAGGAAATCTGTAATTAAAGGCCC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000061156.10 |
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| 3UTR GCA 72 bp | TCCCTTTGGCAGAGGGCCCCTGGGGGAGATCTGACCTaGAGTCAGGTGGTTGCTGCGAGGGTGATGGCTGAC | + |
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Preference number: 3 (lower is better) Translates to: SLWQRAPGGDLT*SQVVAARVMAD Trigger: GTCAGCCATCACCCTCGCAGCAACCACCTGACTGCAGGTCAGATCTCCCCCAGGGGCCCTCTGCCAAAGGGA 64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000061156.10 |
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| 3UTR CCA 72 bp | TGCAACCCAGCTTCTGCTGCAAGCCGCGAAGTCAGTTaGAGCACGGTTGCCCCTCAGACGGCAGCTCTTGGC | + |
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Preference number: 3 (lower is better) Translates to: CNPASAASREVS*STVAPQTAALG Trigger: GCCAAGAGCTGCCGTCTGAGGGGCAACCGTGCTCCAACTGACTTCGCGGCTTGCAGCAGAAGCTGGGTTGCA 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000061156.10 |
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| 3UTR CCA 72 bp | AAGGAGTTTGCCGTGCGCACTTTGGGAGCTGTGAGCTaGGTGGGCCTCGGCTTTGCCTGTCTCCTCCAAGCC | + |
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Preference number: 3 (lower is better) Translates to: KEFAVRTLGAVS*VGLGFACLLQA Trigger: GGCTTGGAGGAGACAGGCAAAGCCGAGGCCCACCCAGCTCACAGCTCCCAAAGTGCGCACGGCAAACTCCTT 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000061156.10 |
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| 3UTR GCA 72 bp | GAAGGCAGGCCCAGGGGTCTCTCGGGCTGCATGATCTaGTTCAGGCCACCTTCTGTGGGCATTCCAACGCAA | + |
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Preference number: 3 (lower is better) Translates to: EGRPRGLSGCMI*FRPPSVGIPTQ Trigger: TTGCGTTGGAATGCCCACAGAAGGTGGCCTGAAGCAGATCATGCAGCCCGAGAGACCCCTGGGCCTGCCTTC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000061156.10 |
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| 3UTR-3UTR CAA 90 bp | CATGCACTCAAGCACTCTGAGAAGGGGAAAGTTAGCCACACCGCAGACTGCAACAAGCCGCGAAGTCAGTaGGAGCACGGTTGCCCCTCA | + |
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Preference number: 3 (lower is better) Translates to: HALKHSEKGKVSHTADCNKPRSQ*EHGCPS Trigger: TGAGGGGCAACCGTGCTCCAACTGACTTCGCGGCTT...GTTGCAGTCTGCGGTGTGGCTAACTTTCCCCTTCTCAGAGTGCTTGAGTGCATG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000061156.10 |
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| 3UTR-3UTR CAA 90 bp | CGAACCTTGCTTTCTGTTTTCAAAAGGAGTTTGCCGTGCGCACTTTGGGAGCTGGGGTGGGCCTCGGCTTaGCCTGTCTCCTCCAAGCCT | + |
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Preference number: 3 (lower is better) Translates to: RTLLSVFKRSLPCALWELGWASA*PVSSKP Trigger: AGGCTTGGAGGAGACAGGCAAAGCCGAGGCCCACCC...CAGCTCCCAAAGTGCGCACGGCAAACTCCTTTTGAAAACAGAAAGCAAGGTTCG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000061156.10 |
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| 3UTR TCA 72 bp | AGGAAGTGCTGTGAAGACACTGTCAGACAGGGCTATTaGCAAGCAGCTGGCAGCTGCTGTGATGCGTGGAGG | + |
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Preference number: 3 (lower is better) Translates to: RKCCEDTVRQGY*QAAGSCCDAWR Trigger: CCTCCACGCATCACAGCAGCTGCCAGCTGCTTGTCAATAGCCCTGTCTGACAGTGTCTTCACAGCACTTCCT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000061156.10 |
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| 3UTR GCA 72 bp | GTCTGTCAGCAAGGCTCTTGCTGGCCAGTACATTTGTaGTCTGAGGAAGCTACATGGAAGGCACTTCCCAGG | + |
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Preference number: 3 (lower is better) Translates to: VCQQGSCWPVHL*SEEATWKALPR Trigger: CCTGGGAAGTGCCTTCCATGTAGCTTCCTCAGAGCACAAATGTACTGGCCAGCAAGAGCCTTGCTGACAGAC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000061156.10 |
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| 3UTR TCA 72 bp | AGACTTTCCTGTCTGGGAGGACAGTGCTTTACTCCATaGCTAACTCCGTGGGGCCTTTATGATGGTGGTCCC | + |
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Preference number: 3 (lower is better) Translates to: RLSCLGGQCFTP*LTPWGLYDGGP Trigger: GGGACCACCATCATAAAGGCCCCACGGAGTTAGTCATGGAGTAAAGCACTGTCCTCCCAGACAGGAAAGTCT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000061156.10 |
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| 3UTR-3UTR CAA 90 bp | GCTGTGAGCTGGGTGGGCCTCGGCTTTGCCTGTCTCCTCCAAGCCTATCCTAAGTTCCTAGAACACATCTaGTCTCTGGACTTACAACTT | + |
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Preference number: 3 (lower is better) Translates to: AVSWVGLGFACLLQAYPKFLEHI*SLDLQL Trigger: AAGTTGTAAGTCCAGAGACAAGATGTGTTCTAGGAA...CTTAGGATAGGCTTGGAGGAGACAGGCAAAGCCGAGGCCCACCCAGCTCACAGC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000061156.10 |
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| 3UTR TCA 72 bp | GCTCTTGGCACTGGGTGTACATTCTGTACTGCCAGATaGATGGAGGACACACAGAAGATAAAGGCCAACCCC | + |
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Preference number: 3 (lower is better) Translates to: ALGTGCTFCTAR*MEDTQKIKANP Trigger: GGGGTTGGCCTTTATCTTCTGTGTGTCCTCCATTCATCTGGCAGTACAGAATGTACACCCAGTGCCAAGAGC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000061156.10 |
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| 3UTR GCA 72 bp | GACGGCAGCTCTTGGCACTGGGTGTACATTCTGTACTaGCAGATGAATGGAGGACACACAGAAGATAAAGGC | + |
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Preference number: 3 (lower is better) Translates to: DGSSWHWVYILY*QMNGGHTEDKG Trigger: GCCTTTATCTTCTGTGTGTCCTCCATTCATCTGGCAGTACAGAATGTACACCCAGTGCCAAGAGCTGCCGTC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000061156.10 |
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| 3UTR TCA 72 bp | AGCTCTCCCCCTCACCGTGGCTTGTTAGAATCTGACTaGAGCCGAGTTCCACACAAGGGTCTTTATAGTTTA | + |
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Preference number: 3 (lower is better) Translates to: SSPPHRGLLESD*SRVPHKGLYSL Trigger: TAAACTATAAAGACCCTTGTGTGGAACTCGGCTTCAGTCAGATTCTAACAAGCCACGGTGAGGGGGAGAGCT 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000061156.10 |
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| 3UTR TCA 72 bp | GAGGACTTTAATACACAGGTGAGCAAGGAAGTGCTGTaGAGACACTGTCAGACAGGGCTATTGACAAGCAGC | + |
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Preference number: 3 (lower is better) Translates to: EDFNTQVSKEVL*RHCQTGLLTSS Trigger: GCTGCTTGTCAATAGCCCTGTCTGACAGTGTCTTCACAGCACTTCCTTGCTCACCTGTGTATTAAAGTCCTC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000061156.10 |
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| 3UTR TCA 72 bp | AACCTTCCGTGCTCACACCTCATTAGATGTCACACCTaGGGAGGCTGGATGTTCTCAGTTTGTAAAAGAACA | + |
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Preference number: 3 (lower is better) Translates to: NLPCSHLIRCHT*GGWMFSVCKRT Trigger: TGTTCTTTTACAAACTGAGAACATCCAGCCTCCTCAGGTGTGACATCTAATGAGGTGTGAGCACGGAAGGTT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000061156.10 |
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| 3UTR CCA 72 bp | AAAAGTAAGTATAAATCTATCTCTGAATGCCTTCTGTaGACCATGGTGGTAAAGCAAGCCTTCCCAAGGGCC | + |
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Preference number: 3 (lower is better) Translates to: KSKYKSISECLL*TMVVKQAFPRA Trigger: GGCCCTTGGGAAGGCTTGCTTTACCACCATGGTCCACAGAAGGCATTCAGAGATAGATTTATACTTACTTTT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000061156.10 |
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| 3UTR TCA 72 bp | TCTGATTTTGACACAGCCAAGTCAAGAGAGCTGACTTaGAGCAGAATTCTAATGTTCAGTTTGACAATAACT | + |
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Preference number: 3 (lower is better) Translates to: SDFDTAKSRELT*SRILMFSLTIT Trigger: AGTTATTGTCAAACTGAACATTAGAATTCTGCTTCAAGTCAGCTCTCTTGACTTGGCTGTGTCAAAATCAGA 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000061156.10 |
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| 3UTR TCA 72 bp | TTGATGTTTTATAATGGTTTATCTGAAACTCAGAACTaGGTATGGTTTTCAGGTTGGACCTCAGCAACACCA | + |
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Preference number: 3 (lower is better) Translates to: LMFYNGLSETQN*VWFSGWTSATP Trigger: TGGTGTTGCTGAGGTCCAACCTGAAAACCATACTCAGTTCTGAGTTTCAGATAAACCATTATAAAACATCAA 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000061156.10 |
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| 3UTR CAA 72 bp | CTGCAACCCAGCTTCTGCTGCAAGCCGCGAAGTCAGTaGGAGCACGGTTGCCCCTCAGACGGCAGCTCTTGG | + |
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Preference number: 4 (lower is better) Translates to: LQPSFCCKPRSQ*EHGCPSDGSSW Trigger: CCAAGAGCTGCCGTCTGAGGGGCAACCGTGCTCCAACTGACTTCGCGGCTTGCAGCAGAAGCTGGGTTGCAG 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000061156.10 |
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| CDS-3UTR GCA 90 bp | GAAAAGCAAGGCACGGTTGCCTCCTGTCTTTCTGGCCGGGCACCATCCACACTGCCCCTTAGCCAGGTATaGTCTCACCAGCCCAACTGC | + |
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Preference number: 4 (lower is better) Translates to: EKQGTVASCLSGRAPSTLPLSQV*SHQPNC Trigger: GCAGTTGGGCTGGTGAGAGCATACCTGGCTAAGGGG...CAGTGTGGATGGTGCCCGGCCAGAAAGACAGGAGGCAACCGTGCCTTGCTTTTC 59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000061156.10 |
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| CDS-3UTR GCA 90 bp | ATTTCCTCCTCCTGTGTGATGAGACAGGCTTTGAGTCTGTCAGCAAGGCTCTTGTCTCACCAGCCCAACTaGTATCACCAGCCACCCCGC | + |
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Preference number: 4 (lower is better) Translates to: ISSSCVMRQALSLSARLLSHQPN*YHQPPR Trigger: GCGGGGTGGCTGGTGATAGCAGTTGGGCTGGTGAGA...CAAGAGCCTTGCTGACAGACTCAAAGCCTGTCTCATCACACAGGAGGAGGAAAT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000061156.10 |
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| 3UTR CAA 72 bp | AATGTAAAGCCAACACAAGTGAAAAGCAAGGCACGGTaGCCTCCTGTCTTTCTGGCCGGGCACCATCCACAC | + |
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Preference number: 4 (lower is better) Translates to: NVKPTQVKSKAR*PPVFLAGHHPH Trigger: GTGTGGATGGTGCCCGGCCAGAAAGACAGGAGGCAACCGTGCCTTGCTTTTCACTTGTGTTGGCTTTACATT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000061156.10 |
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| CDS-3UTR TCA 90 bp | CGAACCTTGCTTTCTGTTTTCAAAAGGAGTTTGCCGTGCGCACTTTGGGAGCTGTCACCACATTGTAGATaGCCAGGTACGCCGTGGCCA | + |
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Preference number: 4 (lower is better) Translates to: RTLLSVFKRSLPCALWELSPHCR*PGTPWP Trigger: TGGCCACGGCGTACCTGGTCATCTACAATGTGGTGA...CAGCTCCCAAAGTGCGCACGGCAAACTCCTTTTGAAAACAGAAAGCAAGGTTCG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000061156.10 |
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| CDS-3UTR GCA 90 bp | CATGCACTCAAGCACTCTGAGAAGGGGAAAGTTAGCCACACCGCAGACTGCAACGACAAAGGGCAGAGCTaGGTATATTGTGAGGAGCTC | + |
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Preference number: 4 (lower is better) Translates to: HALKHSEKGKVSHTADCNDKGQS*VYCEEL Trigger: GAGCTCCTCACAATATACGCAGCTCTGCCCTTTGTC...GTTGCAGTCTGCGGTGTGGCTAACTTTCCCCTTCTCAGAGTGCTTGAGTGCATG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000061156.10 |
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| CDS-3UTR CCA 90 bp | CACTCTGAGAAGGGGAAAGTTAGCCACACCGCAGACTGCAACCCAGCTTCTGCTCTCTGGTGTATCATGTaGAAGTACAACTGGGGGAAC | + |
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Preference number: 4 (lower is better) Translates to: HSEKGKVSHTADCNPASALWCIM*KYNWGN Trigger: GTTCCCCCAGTTGTACTTCCACATGATACACCAGAG...AGCAGAAGCTGGGTTGCAGTCTGCGGTGTGGCTAACTTTCCCCTTCTCAGAGTG 52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000061156.10 |
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| CDS-3UTR GCA 90 bp | CACTCTGAGAAGGGGAAAGTTAGCCACACCGCAGACTGCAACCCAGCTTCTGCTACACTGTCTTCACTCTaGACCTCTTTGACACTATGT | + |
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Preference number: 4 (lower is better) Translates to: HSEKGKVSHTADCNPASATLSSL*TSLTLC Trigger: ACATAGTGTCAAAGAGGTGCAGAGTGAAGACAGTGT...AGCAGAAGCTGGGTTGCAGTCTGCGGTGTGGCTAACTTTCCCCTTCTCAGAGTG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000061156.10 |
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| 3UTR CAA 72 bp | TTACAGATTTCCTCCTCCTGTGTGATGAGACAGGCTTaGAGTCTGTCAGCAAGGCTCTTGCTGGCCAGTACA | + |
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Preference number: 4 (lower is better) Translates to: LQISSSCVMRQA*SLSARLLLAST Trigger: TGTACTGGCCAGCAAGAGCCTTGCTGACAGACTCAAAGCCTGTCTCATCACACAGGAGGAGGAAATCTGTAA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000061156.10 |
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| CDS-3UTR TCA 90 bp | GGGCCTTTAATTACAGATTTCCTCCTCCTGTGTGATGAGACAGGCTTTGAGTCTCACTCTGCACCTCTTTaGCACTATGTGTCACTGCCC | + |
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Preference number: 4 (lower is better) Translates to: GPLITDFLLLCDETGFESHSAPL*HYVSLP Trigger: GGGCAGTGACACATAGTGTCAAAGAGGTGCAGAGTG...AGACTCAAAGCCTGTCTCATCACACAGGAGGAGGAAATCTGTAATTAAAGGCCC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000061156.10 |
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| CDS-3UTR GCA 90 bp | GCTATTGACAAGCAGCTGGCAGCTGCTGTGATGCGTGGAGGGGACAGTACTACCGATCAGAATCAGGAATaGATGGTAATCAAAGGAGAA | + |
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Preference number: 4 (lower is better) Translates to: AIDKQLAAAVMRGGDSTTDQNQE*MVIKGE Trigger: TTCTCCTTTGATTACCATGCATTCCTGATTCTGATC...GGTAGTACTGTCCCCTCCACGCATCACAGCAGCTGCCAGCTGCTTGTCAATAGC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000061156.10 |
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| CDS-3UTR CCA 90 bp | CATGCACTCAAGCACTCTGAGAAGGGGAAAGTTAGCCACACCGCAGACTGCAACAGGACCTTTCTTCTCTaGTGTATCATGTGGAAGTAC | + |
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Preference number: 4 (lower is better) Translates to: HALKHSEKGKVSHTADCNRTFLL*CIMWKY Trigger: GTACTTCCACATGATACACCAGAGAAGAAAGGTCCT...GTTGCAGTCTGCGGTGTGGCTAACTTTCCCCTTCTCAGAGTGCTTGAGTGCATG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000061156.10 |
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| 3UTR CAA 72 bp | CACAATCTAAACTTGGTCCTGGCATTCATCCGAACCTaGCTTTCTGTTTTCAAAAGGAGTTTGCCGTGCGCA | + |
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Preference number: 4 (lower is better) Translates to: HNLNLVLAFIRT*LSVFKRSLPCA Trigger: TGCGCACGGCAAACTCCTTTTGAAAACAGAAAGCAAGGTTCGGATGAATGCCAGGACCAAGTTTAGATTGTG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000061156.10 |
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| CDS-3UTR CCA 90 bp | AATAGAAATGTAAAGCCAACACAAGTGAAAAGCAAGGCACGGTTGCCTCCTGTCCAGGACAACAGAAGATaGCACAATCCCTATAGCACA | + |
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Preference number: 4 (lower is better) Translates to: NRNVKPTQVKSKARLPPVQDNRR*HNPYST Trigger: TGTGCTATAGGGATTGTGCCATCTTCTGTTGTCCTG...GACAGGAGGCAACCGTGCCTTGCTTTTCACTTGTGTTGGCTTTACATTTCTATT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000061156.10 |
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| CDS-3UTR TCA 90 bp | GCTGGATGTTCTCAGTTTGTAAAAGAACATGATTACCTCAACAGAGAAATCAAAGAATGTAGGAGATCATaGTCAGAATCAGGAATGCAT | + |
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Preference number: 4 (lower is better) Translates to: AGCSQFVKEHDYLNREIKECRRS*SESGMH Trigger: ATGCATTCCTGATTCTGATCATGATCTCCTACATTC...TTTGATTTCTCTGTTGAGGTAATCATGTTCTTTTACAAACTGAGAACATCCAGC 37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000061156.10 |
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| CDS TCA 90 bp | CAACTGCTATCACCAGCCACCCCGCCGTCATCACCACATTGTAGATaGCCAGGTACGCCGTGGCCACAGGCCCGGGGCCCTTCTTCTTCC | + |
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Preference number: 5 (lower is better) Translates to: QLLSPATPPSSPHCR*PGTPWPQARGPSSS Trigger: GGAAGAAGAAGGGCCCCGGGCCTGTGGCCACGGCGTACCTGGTCATCTACAATGTGGTGATGACGGCGGGGTGGCTGGTGATAGCAGTTG 62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000061156.10 |
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| CDS CCA 90 bp | GGGCAGAGCTGCGTATATTGTGAGGAGCTCTCCTGTCACTCCCATTaGGTACAGCACGATGAAAAGTGTGTACCTGGCCCATTTGATGAT | + |
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Preference number: 5 (lower is better) Translates to: GQSCVYCEELSCHSH*VQHDEKCVPGPFDD Trigger: ATCATCAAATGGGCCAGGTACACACTTTTCATCGTGCTGTACCCAATGGGAGTGACAGGAGAGCTCCTCACAATATACGCAGCTCTGCCC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000061156.10 |
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| CDS TCA 90 bp | TCATGTGGAAGTACAACTGGGGGAACAGTGGAATGTAGGAGATCATaGTCAGAATCAGGAATGCATGGTAATCAAAGGAGAAGTTGTATT | + |
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Preference number: 5 (lower is better) Translates to: SCGSTTGGTVECRRS*SESGMHGNQRRSCI Trigger: AATACAACTTCTCCTTTGATTACCATGCATTCCTGATTCTGATCATGATCTCCTACATTCCACTGTTCCCCCAGTTGTACTTCCACATGA 41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000061156.10 |
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| CDS GCA 72 bp | CCACAGGCCCGGGGCCCTTCTTCTTCCGCGCGCCGCTaGTGTCGCCAGCCCCGACTCGGCCACTGCCGCCCC | + |
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Preference number: 6 (lower is better) Translates to: PQARGPSSSARR*CRQPRLGHCRP Trigger: GGGGCGGCAGTGGCCGAGTCGGGGCTGGCGACAGCAGCGGCGCGCGGAAGAAGAAGGGCCCCGGGCCTGTGG 78% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000061156.10 |
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| CDS TCA 72 bp | TCACCAGCCACCCCGCCGTCATCACCACATTGTAGATaGCCAGGTACGCCGTGGCCACAGGCCCGGGGCCCT | + |
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Preference number: 6 (lower is better) Translates to: SPATPPSSPHCR*PGTPWPQARGP Trigger: AGGGCCCCGGGCCTGTGGCCACGGCGTACCTGGTCATCTACAATGTGGTGATGACGGCGGGGTGGCTGGTGA 67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000061156.10 |
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| CDS GCA 72 bp | GGAGTACAGGCCGGCCTGCCGGACAAAGGGCAGAGCTaGGTATATTGTGAGGAGCTCTCCTGTCACTCCCAT | + |
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Preference number: 6 (lower is better) Translates to: GVQAGLPDKGQS*VYCEELSCHSH Trigger: ATGGGAGTGACAGGAGAGCTCCTCACAATATACGCAGCTCTGCCCTTTGTCCGGCAGGCCGGCCTGTACTCC 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000061156.10 |
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| CDS TCA 72 bp | CGGCCTGCCGGACAAAGGGCAGAGCTGCGTATATTGTaGGGAGCTCTCCTGTCACTCCCATTGGGTACAGCA | + |
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Preference number: 6 (lower is better) Translates to: RPAGQRAELRIL*GALLSLPLGTA Trigger: TGCTGTACCCAATGGGAGTGACAGGAGAGCTCCTCACAATATACGCAGCTCTGCCCTTTGTCCGGCAGGCCG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000061156.10 |
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| CDS GCA 72 bp | ATAATAAAGGCTATGGTAGCTCCCCTTAGCCAGGTATaGTCTCACCAGCCCAACTGCTATCACCAGCCACCC | + |
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Preference number: 6 (lower is better) Translates to: IIKAMVAPLSQV*SHQPNCYHQPP Trigger: GGGTGGCTGGTGATAGCAGTTGGGCTGGTGAGAGCATACCTGGCTAAGGGGAGCTACCATAGCCTTTATTAT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000061156.10 |
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| CDS CCA 72 bp | TGCGTATATTGTGAGGAGCTCTCCTGTCACTCCCATTaGGTACAGCACGATGAAAAGTGTGTACCTGGCCCA | + |
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Preference number: 6 (lower is better) Translates to: CVYCEELSCHSH*VQHDEKCVPGP Trigger: TGGGCCAGGTACACACTTTTCATCGTGCTGTACCCAATGGGAGTGACAGGAGAGCTCCTCACAATATACGCA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000061156.10 |
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| CDS TCA 72 bp | GGCTCCTGTCTGGAAGAACTTCAAAGGCCTTTCTATTaGATAATAAAGGCTATGGTAGCTCCCCTTAGCCAG | + |
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Preference number: 6 (lower is better) Translates to: GSCLEELQRPFY*IIKAMVAPLSQ Trigger: CTGGCTAAGGGGAGCTACCATAGCCTTTATTATTCAATAGAAAGGCCTTTGAAGTTCTTCCAGACAGGAGCC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000061156.10 |
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| CDS TCA 72 bp | AGTACAACTGGGGGAACAGTGGAATGTAGGAGATCATaGTCAGAATCAGGAATGCATGGTAATCAAAGGAGA | + |
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Preference number: 6 (lower is better) Translates to: STTGGTVECRRS*SESGMHGNQRR Trigger: TCTCCTTTGATTACCATGCATTCCTGATTCTGATCATGATCTCCTACATTCCACTGTTCCCCCAGTTGTACT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000061156.10 |
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