Pregenerated sensors for HACD1 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000063275Ensembl transcript IDs: ENSMUST00000074854.9, ENSMUST00000091429.12, ENSMUST00000114753.8, ENSMUST00000131730.7
Found 58 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | TATCCACTTATCAGTGAGTACATATCATGTGAGTTCTTTTGTGAGTaGGTTACCTCACTCAGGATGATGCCCTCCAGGTCCATCAATTTG | + |
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Preference number: 1 (lower is better) Translates to: YPLISEYISCEFFCE*VTSLRMMPSRSINL Trigger: CAAATTGATGGACCTGGAGGGCATCATCCTGAGTGAGGTAACCCACTCACAAAAGAACTCACATGATATGTACTCACTGATAAGTGGATA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000131730.7 |
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| 3UTR-3UTR TCA 90 bp | AAAAACTGTGGGATTGATGTCAGTGTTTGGAGGCTGATTATGGGATGGATCCCTTGGTTGCCTTCTCATTaGATCTTGCTCTCATCTCTT | + |
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Preference number: 2 (lower is better) Translates to: KNCGIDVSVWRLIMGWIPWLPSH*ILLSSL Trigger: AAGAGATGAGAGCAAGATTCAATGAGAAGGCAACCA...AGGGATCCATCCCATAATCAGCCTCCAAACACTGACATCAATCCCACAGTTTTT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000131730.7 |
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| 3UTR-3UTR GCA 90 bp | TTATCAGTGAGTACATATCATGTGAGTTCTTTTGTGAGTGGGTTACCTCACTCACTTCTCATTGAATCTTaGTCTCATCTCTTGTGTGTG | + |
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Preference number: 2 (lower is better) Translates to: LSVSTYHVSSFVSGLPHSLLIES*SHLLCV Trigger: CACACACAAGAGATGAGAGCAAGATTCAATGAGAAG...TGAGTGAGGTAACCCACTCACAAAAGAACTCACATGATATGTACTCACTGATAA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000131730.7 |
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| 3UTR GCA 72 bp | TCCATTCCTCTGTTGAGGGCCATCTGGGCTGTCTCTTaGAAGGCTATGCCGGAGCCTGATCTCAGACTCCAG | + |
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Preference number: 3 (lower is better) Translates to: SIPLLRAIWAVS*KAMPEPDLRLQ Trigger: CTGGAGTCTGAGATCAGGCTCCGGCATAGCCTTGCAAGAGACAGCCCAGATGGCCCTCAACAGAGGAATGGA 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000131730.7 |
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| 3UTR-3UTR CAA 90 bp | AAAAACTGTGGGATTGATGTCAGTGTTTGGAGGCTGATTATGGGATGGATCCCTCATCTGGGCTGTCTCTaGCAAGGCTATGCCGGAGCC | + |
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Preference number: 3 (lower is better) Translates to: KNCGIDVSVWRLIMGWIPHLGCL*QGYAGA Trigger: GGCTCCGGCATAGCCTTGCAAGAGACAGCCCAGATG...AGGGATCCATCCCATAATCAGCCTCCAAACACTGACATCAATCCCACAGTTTTT 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000131730.7 |
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| 3UTR TCA 72 bp | GTAAATGTACCACATTTTCTGTATCCATTCCTCTGTTaGGGGCCATCTGGGCTGTCTCTTGCAAGGCTATGC | + |
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Preference number: 3 (lower is better) Translates to: VNVPHFLYPFLC*GPSGLSLARLC Trigger: GCATAGCCTTGCAAGAGACAGCCCAGATGGCCCTCAACAGAGGAATGGATACAGAAAATGTGGTACATTTAC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000131730.7 |
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| 3UTR CCA 72 bp | AGTAATCCGGTTTTTCTGAAAAGAGCACCTTGTGTGTaGGAACCACTTAATCGTCCTTCTCCGCGATCACCT | + |
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Preference number: 3 (lower is better) Translates to: SNPVFLKRAPCV*EPLNRPSPRSP Trigger: AGGTGATCGCGGAGAAGGACGATTAAGTGGTTCCCACACACAAGGTGCTCTTTTCAGAAAAACCGGATTACT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000091429.12 |
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| 3UTR CCA 72 bp | ATCAGTGAGTACATATCATGTGAGTTCTTTTGTGAGTaGGTTACCTCACTCAGGATGATGCCCTCCAGGTCC | + |
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Preference number: 3 (lower is better) Translates to: ISEYISCEFFCE*VTSLRMMPSRS Trigger: GGACCTGGAGGGCATCATCCTGAGTGAGGTAACCCACTCACAAAAGAACTCACATGATATGTACTCACTGAT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000131730.7 |
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| 3UTR TCA 72 bp | AACTGGATACAGAAGAGGAACTGGTTGCCTTCTCATTaGATCTTGCTCTCATCTCTTGTGTGTGGGAACCAC | + |
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Preference number: 3 (lower is better) Translates to: NWIQKRNWLPSH*ILLSSLVCGNH Trigger: GTGGTTCCCACACACAAGAGATGAGAGCAAGATTCAATGAGAAGGCAACCAGTTCCTCTTCTGTATCCAGTT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000131730.7 |
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| 3UTR GCA 72 bp | CTGAGTAAGAAAACTGGATACAGAAGAGGAACTGGTTaGCTTCTCATTGAATCTTGCTCTCATCTCTTGTGT | + |
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Preference number: 3 (lower is better) Translates to: LSKKTGYRRGTG*LLIESCSHLLC Trigger: ACACAAGAGATGAGAGCAAGATTCAATGAGAAGGCAACCAGTTCCTCTTCTGTATCCAGTTTTCTTACTCAG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000131730.7 |
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| 3UTR-3UTR CAA 90 bp | TTCATGTGTTTTGCAAATTGTATCTTGTATCTTGGGTATTCTAAGTTTCTGGGCCTGGTTGCCTTCTCATaGAATCTTGCTCTCATCTCT | + |
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Preference number: 3 (lower is better) Translates to: FMCFANCILYLGYSKFLGLVAFS*NLALIS Trigger: AGAGATGAGAGCAAGATTCAATGAGAAGGCAACCAG...GCCCAGAAACTTAGAATACCCAAGATACAAGATACAATTTGCAAAACACATGAA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000131730.7 |
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| 3UTR CCA 72 bp | TCACAAAAATCAGCCCTCCTATATAGAAGTGACAACTaGACTGAGAAAGAAATAGGAAAAATAACACCTCTC | + |
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Preference number: 3 (lower is better) Translates to: SQKSALLYRSDN*TEKEIGKITPL Trigger: GAGAGGTGTTATTTTTCCTATTTCTTTCTCAGTCCAGTTGTCACTTCTATATAGGAGGGCTGATTTTTGTGA 38% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000131730.7 |
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| CDS-3UTR TCA 90 bp | CTTAATCGTCCTTCTCCGCGATCACCTCCCCGTGGAGCACCTTTCTTCTCTGACCGATATTGTAGAAGGTaGGCCAGGCGGTGGCCAGTA | + |
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Preference number: 4 (lower is better) Translates to: LNRPSPRSPPRGAPFFSDRYCRR*ARRWPV Trigger: TACTGGCCACCGCCTGGCTCACCTTCTACAATATCG...GTCAGAGAAGAAAGGTGCTCCACGGGGAGGTGATCGCGGAGAAGGACGATTAAG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000091429.12 ENSMUST00000131730.7 |
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| CDS-3UTR TCA 90 bp | GAACCACTTAATCGTCCTTCTCCGCGATCACCTCCCCGTGGAGCACCTTTCTTCCGATATTGTAGAAGGTaGGCCAGGCGGTGGCCAGTA | + |
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Preference number: 4 (lower is better) Translates to: EPLNRPSPRSPPRGAPFFRYCRR*ARRWPV Trigger: TACTGGCCACCGCCTGGCTCACCTTCTACAATATCG...GAAGAAAGGTGCTCCACGGGGAGGTGATCGCGGAGAAGGACGATTAAGTGGTTC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000091429.12 ENSMUST00000131730.7 |
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| CDS-3UTR TCA 90 bp | GAACCACTTAATCGTCCTTCTCCGCGATCACCTCCCCGTGGAGCACCTTTCTTCAGGCGGCGTATATTGTaGGAAGTTCCCCAGCAACTC | + |
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Preference number: 4 (lower is better) Translates to: EPLNRPSPRSPPRGAPFFRRRIL*EVPQQL Trigger: GAGTTGCTGGGGAACTTCTCACAATATACGCCGCCT...GAAGAAAGGTGCTCCACGGGGAGGTGATCGCGGAGAAGGACGATTAAGTGGTTC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000091429.12 ENSMUST00000131730.7 |
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| CDS-3UTR CCA 90 bp | TTGGACTCAAGTAATCCGGTTTTTCTGAAAAGAGCACCTTGTGTGTGGGAACCACCTCGGAGGCGCCGTTaGTGCCGTCCTCCTCACTGG | + |
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Preference number: 4 (lower is better) Translates to: LDSSNPVFLKRAPCVWEPPRRRR*CRPPHW Trigger: CCAGTGAGGAGGACGGCACCAACGGCGCCTCCGAGG...TGGTTCCCACACACAAGGTGCTCTTTTCAGAAAAACCGGATTACTTGAGTCCAA 54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000091429.12 ENSMUST00000114753.8 |
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| CDS-3UTR TCA 90 bp | TTTTCTGTATCCATTCCTCTGTTGAGGGCCATCTGGGCTGTCTCTTGCAAGGCTAGGCGGCGTATATTGTaGGAAGTTCCCCAGCAACTC | + |
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Preference number: 4 (lower is better) Translates to: FSVSIPLLRAIWAVSCKARRRIL*EVPQQL Trigger: GAGTTGCTGGGGAACTTCTCACAATATACGCCGCCT...AGCCTTGCAAGAGACAGCCCAGATGGCCCTCAACAGAGGAATGGATACAGAAAA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000131730.7 |
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| CDS-3UTR CCA 90 bp | TTATCAGTGAGTACATATCATGTGAGTTCTTTTGTGAGTGGGTTACCTCACTCACCTCGGAGGCGCCGTTaGTGCCGTCCTCCTCACTGG | + |
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Preference number: 4 (lower is better) Translates to: LSVSTYHVSSFVSGLPHSPRRRR*CRPPHW Trigger: CCAGTGAGGAGGACGGCACCAACGGCGCCTCCGAGG...TGAGTGAGGTAACCCACTCACAAAAGAACTCACATGATATGTACTCACTGATAA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000131730.7 |
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| CDS-3UTR CCA 90 bp | GAACCACTTAATCGTCCTTCTCCGCGATCACCTCCCCGTGGAGCACCTTTCTTCTCACAAGCACAGAAGTaGGTACAATTCCGATCAGAC | + |
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Preference number: 4 (lower is better) Translates to: EPLNRPSPRSPPRGAPFFSQAQK*VQFRSD Trigger: GTCTGATCGGAATTGTACCCACTTCTGTGCTTGTGA...GAAGAAAGGTGCTCCACGGGGAGGTGATCGCGGAGAAGGACGATTAAGTGGTTC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000091429.12 ENSMUST00000131730.7 |
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| CDS-3UTR TCA 90 bp | TTGGACTCAAGTAATCCGGTTTTTCTGAAAAGAGCACCTTGTGTGTGGGAACCACGATATTGTAGAAGGTaGGCCAGGCGGTGGCCAGTA | + |
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Preference number: 4 (lower is better) Translates to: LDSSNPVFLKRAPCVWEPRYCRR*ARRWPV Trigger: TACTGGCCACCGCCTGGCTCACCTTCTACAATATCG...TGGTTCCCACACACAAGGTGCTCTTTTCAGAAAAACCGGATTACTTGAGTCCAA 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000091429.12 ENSMUST00000114753.8 |
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| CDS-3UTR TCA 90 bp | TTGGACTCAAGTAATCCGGTTTTTCTGAAAAGAGCACCTTGTGTGTGGGAACCAAGAAGGAATAGCGAGTaGTCTCGGTCACAGTCCAGG | + |
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Preference number: 4 (lower is better) Translates to: LDSSNPVFLKRAPCVWEPRRNSE*SRSQSR Trigger: CCTGGACTGTGACCGAGATCACTCGCTATTCCTTCT...TGGTTCCCACACACAAGGTGCTCTTTTCAGAAAAACCGGATTACTTGAGTCCAA 48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000114753.8 |
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| CDS-3UTR TCA 90 bp | TTGGACTCAAGTAATCCGGTTTTTCTGAAAAGAGCACCTTGTGTGTGGGAACCAAGGCGGCGTATATTGTaGGAAGTTCCCCAGCAACTC | + |
|
Preference number: 4 (lower is better) Translates to: LDSSNPVFLKRAPCVWEPRRRIL*EVPQQL Trigger: GAGTTGCTGGGGAACTTCTCACAATATACGCCGCCT...TGGTTCCCACACACAAGGTGCTCTTTTCAGAAAAACCGGATTACTTGAGTCCAA 48% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 2 transcripts: ENSMUST00000091429.12 ENSMUST00000114753.8 |
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| CDS-3UTR TCA 90 bp | AATCCGGTTTTTCTGAAAAGAGCACCTTGTGTGTGGGAACCACTTAATCGTCCTCACCATGAAGATTCTTaGGCTCACTTGGACCCCAGT | + |
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Preference number: 4 (lower is better) Translates to: NPVFLKRAPCVWEPLNRPHHEDS*AHLDPS Trigger: ACTGGGGTCCAAGTGAGCTCAAGAATCTTCATGGTG...AGGACGATTAAGTGGTTCCCACACACAAGGTGCTCTTTTCAGAAAAACCGGATT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000091429.12 |
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| CDS-3UTR TCA 90 bp | TTGGACTCAAGTAATCCGGTTTTTCTGAAAAGAGCACCTTGTGTGTGGGAACCACACCATGAAGATTCTTaGGCTCACTTGGACCCCAGT | + |
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Preference number: 4 (lower is better) Translates to: LDSSNPVFLKRAPCVWEPHHEDS*AHLDPS Trigger: ACTGGGGTCCAAGTGAGCTCAAGAATCTTCATGGTG...TGGTTCCCACACACAAGGTGCTCTTTTCAGAAAAACCGGATTACTTGAGTCCAA 47% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 2 transcripts: ENSMUST00000091429.12 ENSMUST00000114753.8 |
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| CDS-3UTR TCA 90 bp | CCGCGATCACCTCCCCGTGGAGCACCTTTCTTCTCTGACGTAACATATGAAAATATGGGTTTTATACTGTaGGTAATGAGCCACACCATG | + |
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Preference number: 4 (lower is better) Translates to: PRSPPRGAPFFSDVTYENMGFIL*VMSHTM Trigger: CATGGTGTGGCTCATTACTCACAGTATAAAACCCAT...ATTTTCATATGTTACGTCAGAGAAGAAAGGTGCTCCACGGGGAGGTGATCGCGG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000091429.12 ENSMUST00000131730.7 |
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| CDS-3UTR GCA 90 bp | TTGGACTCAAGTAATCCGGTTTTTCTGAAAAGAGCACCTTGTGTGTGGGAACCAGCCCATTTAATGAAGTaGGGCAAGTGGTCGAGGAGA | + |
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Preference number: 4 (lower is better) Translates to: LDSSNPVFLKRAPCVWEPAHLMK*GKWSRR Trigger: TCTCCTCGACCACTTGCCGCACTTCATTAAATGGGC...TGGTTCCCACACACAAGGTGCTCTTTTCAGAAAAACCGGATTACTTGAGTCCAA 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000114753.8 |
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| CDS-3UTR CCA 90 bp | TTGGACTCAAGTAATCCGGTTTTTCTGAAAAGAGCACCTTGTGTGTGGGAACCAATGAAGTGCGGCAAGTaGTCGAGGAGACTGAATGTG | + |
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Preference number: 4 (lower is better) Translates to: LDSSNPVFLKRAPCVWEPMKCGK*SRRLNV Trigger: CACATTCAGTCTCCTCGACCACTTGCCGCACTTCAT...TGGTTCCCACACACAAGGTGCTCTTTTCAGAAAAACCGGATTACTTGAGTCCAA 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000114753.8 |
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| CDS-3UTR TCA 90 bp | TTGGACTCAAGTAATCCGGTTTTTCTGAAAAGAGCACCTTGTGTGTGGGAACCAAGTGGTCGAGGAGACTaGATGTGTAGAAGGAATAGC | + |
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Preference number: 4 (lower is better) Translates to: LDSSNPVFLKRAPCVWEPSGRGD*MCRRNS Trigger: GCTATTCCTTCTACACATTCAGTCTCCTCGACCACT...TGGTTCCCACACACAAGGTGCTCTTTTCAGAAAAACCGGATTACTTGAGTCCAA 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000114753.8 |
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| CDS-3UTR CCA 90 bp | AATCCGGTTTTTCTGAAAAGAGCACCTTGTGTGTGGGAACCACTTAATCGTCCTATTCTTGAGCTCACTTaGACCCCAGTCACAAGCACA | + |
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Preference number: 4 (lower is better) Translates to: NPVFLKRAPCVWEPLNRPILELT*TPVTST Trigger: TGTGCTTGTGACTGGGGTCCAAGTGAGCTCAAGAAT...AGGACGATTAAGTGGTTCCCACACACAAGGTGCTCTTTTCAGAAAAACCGGATT 46% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000091429.12 |
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| CDS-3UTR CCA 90 bp | TTGGACTCAAGTAATCCGGTTTTTCTGAAAAGAGCACCTTGTGTGTGGGAACCAATTCTTGAGCTCACTTaGACCCCAGTCACAAGCACA | + |
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Preference number: 4 (lower is better) Translates to: LDSSNPVFLKRAPCVWEPILELT*TPVTST Trigger: TGTGCTTGTGACTGGGGTCCAAGTGAGCTCAAGAAT...TGGTTCCCACACACAAGGTGCTCTTTTCAGAAAAACCGGATTACTTGAGTCCAA 46% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 2 transcripts: ENSMUST00000091429.12 ENSMUST00000114753.8 |
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| CDS-3UTR CCA 90 bp | CCGCGATCACCTCCCCGTGGAGCACCTTTCTTCTCTGACGTAACATATGAAAATAAACATTGTACTTGTTaGGAAGCCGTACTGAGAACA | + |
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Preference number: 4 (lower is better) Translates to: PRSPPRGAPFFSDVTYENKHCTC*EAVLRT Trigger: TGTTCTCAGTACGGCTTCCCAACAAGTACAATGTTT...ATTTTCATATGTTACGTCAGAGAAGAAAGGTGCTCCACGGGGAGGTGATCGCGG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000091429.12 ENSMUST00000131730.7 |
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| 3UTR CAA 72 bp | TGTAAATGTACCACATTTTCTGTATCCATTCCTCTGTaGAGGGCCATCTGGGCTGTCTCTTGCAAGGCTATG | + |
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Preference number: 4 (lower is better) Translates to: CKCTTFSVSIPL*RAIWAVSCKAM Trigger: CATAGCCTTGCAAGAGACAGCCCAGATGGCCCTCAACAGAGGAATGGATACAGAAAATGTGGTACATTTACA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000131730.7 |
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| CDS-3UTR CCA 90 bp | TTGGACTCAAGTAATCCGGTTTTTCTGAAAAGAGCACCTTGTGTGTGGGAACCATCACAAGCACAGAAGTaGGTACAATTCCGATCAGAC | + |
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Preference number: 4 (lower is better) Translates to: LDSSNPVFLKRAPCVWEPSQAQK*VQFRSD Trigger: GTCTGATCGGAATTGTACCCACTTCTGTGCTTGTGA...TGGTTCCCACACACAAGGTGCTCTTTTCAGAAAAACCGGATTACTTGAGTCCAA 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000091429.12 ENSMUST00000114753.8 |
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| 3UTR CAA 72 bp | AAACTGGATACAGAAGAGGAACTGGTTGCCTTCTCATaGAATCTTGCTCTCATCTCTTGTGTGTGGGAACCA | + |
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Preference number: 4 (lower is better) Translates to: KLDTEEELVAFS*NLALISCVWEP Trigger: TGGTTCCCACACACAAGAGATGAGAGCAAGATTCAATGAGAAGGCAACCAGTTCCTCTTCTGTATCCAGTTT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000131730.7 |
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| CDS-3UTR TCA 90 bp | TTGGACTCAAGTAATCCGGTTTTTCTGAAAAGAGCACCTTGTGTGTGGGAACCAATGGGTTTTATACTGTaGGTAATGAGCCACACCATG | + |
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Preference number: 4 (lower is better) Translates to: LDSSNPVFLKRAPCVWEPMGFIL*VMSHTM Trigger: CATGGTGTGGCTCATTACTCACAGTATAAAACCCAT...TGGTTCCCACACACAAGGTGCTCTTTTCAGAAAAACCGGATTACTTGAGTCCAA 43% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 2 transcripts: ENSMUST00000091429.12 ENSMUST00000114753.8 |
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| CDS-3UTR TCA 90 bp | AAAAACTGTGGGATTGATGTCAGTGTTTGGAGGCTGATTATGGGATGGATCCCTATGGGTTTTATACTGTaGGTAATGAGCCACACCATG | + |
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Preference number: 4 (lower is better) Translates to: KNCGIDVSVWRLIMGWIPMGFIL*VMSHTM Trigger: CATGGTGTGGCTCATTACTCACAGTATAAAACCCAT...AGGGATCCATCCCATAATCAGCCTCCAAACACTGACATCAATCCCACAGTTTTT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000131730.7 |
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| 3UTR CAA 72 bp | CCAATCTTTGTCTCTGTAACTCCTTCCATGGGTGTTTaGTTCCCAATTCTAAGAAGGAGCAAAGTGTCCACA | + |
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Preference number: 4 (lower is better) Translates to: PIFVSVTPSMGV*FPILRRSKVST Trigger: TGTGGACACTTTGCTCCTTCTTAGAATTGGGAACAAAACACCCATGGAAGGAGTTACAGAGACAAAGATTGG 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000131730.7 |
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| CDS-3UTR TCA 90 bp | TTGGACTCAAGTAATCCGGTTTTTCTGAAAAGAGCACCTTGTGTGTGGGAACCAAGGAGGCCATGGTTATaGGAAGAAAATAGTAGTAGT | + |
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Preference number: 4 (lower is better) Translates to: LDSSNPVFLKRAPCVWEPRRPWL*EENSSS Trigger: ACTACTACTATTTTCTTCTCATAACCATGGCCTCCT...TGGTTCCCACACACAAGGTGCTCTTTTCAGAAAAACCGGATTACTTGAGTCCAA 42% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000114753.8 |
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| CDS-3UTR CCA 90 bp | CAAAAATCAGCCCTCCTATATAGAAGTGACAACTGGACTGAGAAAGAAATAGGAATTCTTGAGCTCACTTaGACCCCAGTCACAAGCACA | + |
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Preference number: 4 (lower is better) Translates to: QKSALLYRSDNWTEKEIGILELT*TPVTST Trigger: TGTGCTTGTGACTGGGGTCCAAGTGAGCTCAAGAAT...TCCTATTTCTTTCTCAGTCCAGTTGTCACTTCTATATAGGAGGGCTGATTTTTG 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000131730.7 |
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| CDS-3UTR CCA 90 bp | TTGGACTCAAGTAATCCGGTTTTTCTGAAAAGAGCACCTTGTGTGTGGGAACCAAAACATTGTACTTGTTaGGAAGCCGTACTGAGAACA | + |
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Preference number: 4 (lower is better) Translates to: LDSSNPVFLKRAPCVWEPKHCTC*EAVLRT Trigger: TGTTCTCAGTACGGCTTCCCAACAAGTACAATGTTT...TGGTTCCCACACACAAGGTGCTCTTTTCAGAAAAACCGGATTACTTGAGTCCAA 42% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 2 transcripts: ENSMUST00000091429.12 ENSMUST00000114753.8 |
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| CDS-3UTR CCA 90 bp | AAAAACTGTGGGATTGATGTCAGTGTTTGGAGGCTGATTATGGGATGGATCCCTAAACATTGTACTTGTTaGGAAGCCGTACTGAGAACA | + |
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Preference number: 4 (lower is better) Translates to: KNCGIDVSVWRLIMGWIPKHCTC*EAVLRT Trigger: TGTTCTCAGTACGGCTTCCCAACAAGTACAATGTTT...AGGGATCCATCCCATAATCAGCCTCCAAACACTGACATCAATCCCACAGTTTTT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000131730.7 |
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| CDS-3UTR CCA 90 bp | TTATCAGTGAGTACATATCATGTGAGTTCTTTTGTGAGTGGGTTACCTCACTCATCACAAGCACAGAAGTaGGTACAATTCCGATCAGAC | + |
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Preference number: 4 (lower is better) Translates to: LSVSTYHVSSFVSGLPHSSQAQK*VQFRSD Trigger: GTCTGATCGGAATTGTACCCACTTCTGTGCTTGTGA...TGAGTGAGGTAACCCACTCACAAAAGAACTCACATGATATGTACTCACTGATAA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000131730.7 |
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| 3UTR CAA 72 bp | ACCTCACTCAGGATGATGCCCTCCAGGTCCATCAATTaGCCTAGGAATTTCATAAATTCATTCTTTTCAATA | + |
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Preference number: 4 (lower is better) Translates to: TSLRMMPSRSIN*PRNFINSFFSI Trigger: TATTGAAAAGAATGAATTTATGAAATTCCTAGGCAAATTGATGGACCTGGAGGGCATCATCCTGAGTGAGGT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000131730.7 |
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| CDS CCA 90 bp | GTAAGCCTAGGCGTCTCCGCTTGCCGGCGGCTTCCTTCTCGTCGCTaGCCTCGGAGGCGCCGTTGGTGCCGTCCTCCTCACTGGACGCCA | + |
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Preference number: 5 (lower is better) Translates to: VSLGVSACRRLPSRR*PRRRRWCRPPHWTP Trigger: TGGCGTCCAGTGAGGAGGACGGCACCAACGGCGCCTCCGAGGCCAGCGACGAGAAGGAAGCCGCCGGCAAGCGGAGACGCCTAGGCTTAC 69% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000074854.9 ENSMUST00000091429.12 ENSMUST00000114753.8 ENSMUST00000131730.7 |
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| CDS-3UTR CAA 90 bp | CCGCGATCACCTCCCCGTGGAGCACCTTTCTTCTCTGACGTAACATATGAAAATGCCTCGGAGGCGCCGTaGGTGCCGTCCTCCTCACTG | + |
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Preference number: 5 (lower is better) Translates to: PRSPPRGAPFFSDVTYENASEAP*VPSSSL Trigger: CAGTGAGGAGGACGGCACCAACGGCGCCTCCGAGGC...ATTTTCATATGTTACGTCAGAGAAGAAAGGTGCTCCACGGGGAGGTGATCGCGG 59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000091429.12 ENSMUST00000131730.7 |
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| CDS-3UTR CAA 90 bp | TTTTCTGTATCCATTCCTCTGTTGAGGGCCATCTGGGCTGTCTCTTGCAAGGCTGCCTCGGAGGCGCCGTaGGTGCCGTCCTCCTCACTG | + |
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Preference number: 5 (lower is better) Translates to: FSVSIPLLRAIWAVSCKAASEAP*VPSSSL Trigger: CAGTGAGGAGGACGGCACCAACGGCGCCTCCGAGGC...AGCCTTGCAAGAGACAGCCCAGATGGCCCTCAACAGAGGAATGGATACAGAAAA 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000131730.7 |
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| CDS-3UTR CAA 90 bp | TTGGACTCAAGTAATCCGGTTTTTCTGAAAAGAGCACCTTGTGTGTGGGAACCAGCCTCGGAGGCGCCGTaGGTGCCGTCCTCCTCACTG | + |
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Preference number: 5 (lower is better) Translates to: LDSSNPVFLKRAPCVWEPASEAP*VPSSSL Trigger: CAGTGAGGAGGACGGCACCAACGGCGCCTCCGAGGC...TGGTTCCCACACACAAGGTGCTCTTTTCAGAAAAACCGGATTACTTGAGTCCAA 56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000091429.12 ENSMUST00000114753.8 |
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| CDS TCA 90 bp | GATGGGTTTTATACTGTGAGTAATGAGCCACACCATGAAGATTCTTaGGCTCACTTGGACCCCAGTCACAAGCACAGAAGTGGGTACAAT | + |
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Preference number: 5 (lower is better) Translates to: DGFYTVSNEPHHEDS*AHLDPSHKHRSGYN Trigger: ATTGTACCCACTTCTGTGCTTGTGACTGGGGTCCAAGTGAGCTCAAGAATCTTCATGGTGTGGCTCATTACTCACAGTATAAAACCCATC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000074854.9 ENSMUST00000114753.8 |
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| CDS TCA 90 bp | TATGGGTTTTATACTGTGAGTAATGAGCCACACCATGAAGATTCTTaGGCTCACTTGGACCCCAGTCACAAGCACAGAAGTGGGTACAAT | + |
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Preference number: 5 (lower is better) Translates to: YGFYTVSNEPHHEDS*AHLDPSHKHRSGYN Trigger: ATTGTACCCACTTCTGTGCTTGTGACTGGGGTCCAAGTGAGCTCAAGAATCTTCATGGTGTGGCTCATTACTCACAGTATAAAACCCATA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000091429.12 ENSMUST00000131730.7 |
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| CDS CCA 72 bp | GGCGTCTCCGCTTGCCGGCGGCTTCCTTCTCGTCGCTaGCCTCGGAGGCGCCGTTGGTGCCGTCCTCCTCAC | + |
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Preference number: 6 (lower is better) Translates to: GVSACRRLPSRR*PRRRRWCRPPH Trigger: GTGAGGAGGACGGCACCAACGGCGCCTCCGAGGCCAGCGACGAGAAGGAAGCCGCCGGCAAGCGGAGACGCC 72% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000074854.9 ENSMUST00000091429.12 ENSMUST00000114753.8 ENSMUST00000131730.7 |
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| CDS GCA 72 bp | GCCAGGCGGTGGCCAGTAAGCCTAGGCGTCTCCGCTTaGCGGCGGCTTCCTTCTCGTCGCTGGCCTCGGAGG | + |
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Preference number: 6 (lower is better) Translates to: ARRWPVSLGVSA*RRLPSRRWPRR Trigger: CCTCCGAGGCCAGCGACGAGAAGGAAGCCGCCGGCAAGCGGAGACGCCTAGGCTTACTGGCCACCGCCTGGC 71% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000074854.9 ENSMUST00000091429.12 ENSMUST00000114753.8 ENSMUST00000131730.7 |
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| CDS CAA 72 bp | AGCCAGGCGGTGGCCAGTAAGCCTAGGCGTCTCCGCTaGCCGGCGGCTTCCTTCTCGTCGCTGGCCTCGGAG | + |
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Preference number: 6 (lower is better) Translates to: SQAVASKPRRLR*PAASFSSLASE Trigger: CTCCGAGGCCAGCGACGAGAAGGAAGCCGCCGGCAAGCGGAGACGCCTAGGCTTACTGGCCACCGCCTGGCT 69% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000074854.9 ENSMUST00000091429.12 ENSMUST00000114753.8 ENSMUST00000131730.7 |
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| CDS TCA 72 bp | CCAACCACCCGGCCGTCATGGCGATATTGTAGAAGGTaGGCCAGGCGGTGGCCAGTAAGCCTAGGCGTCTCC | + |
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Preference number: 6 (lower is better) Translates to: PTTRPSWRYCRR*ARRWPVSLGVS Trigger: GGAGACGCCTAGGCTTACTGGCCACCGCCTGGCTCACCTTCTACAATATCGCCATGACGGCCGGGTGGTTGG 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000074854.9 ENSMUST00000091429.12 ENSMUST00000114753.8 ENSMUST00000131730.7 |
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| CDS CCA 72 bp | TTGAGCTCACTTGGACCCCAGTCACAAGCACAGAAGTaGGTACAATTCCGATCAGACAATGGACTACCTCAA | + |
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Preference number: 6 (lower is better) Translates to: LSSLGPQSQAQK*VQFRSDNGLPQ Trigger: TTGAGGTAGTCCATTGTCTGATCGGAATTGTACCCACTTCTGTGCTTGTGACTGGGGTCCAAGTGAGCTCAA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000074854.9 ENSMUST00000091429.12 ENSMUST00000114753.8 ENSMUST00000131730.7 |
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| CDS TCA 72 bp | CTGACTTCTTTACGTAAGGCAAGGCGGCGTATATTGTaGGAAGTTCCCCAGCAACTCCAACGGGATATAAGA | + |
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Preference number: 6 (lower is better) Translates to: LTSLRKARRRIL*EVPQQLQRDIR Trigger: TCTTATATCCCGTTGGAGTTGCTGGGGAACTTCTCACAATATACGCCGCCTTGCCTTACGTAAAGAAGTCAG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000074854.9 ENSMUST00000091429.12 ENSMUST00000114753.8 ENSMUST00000131730.7 |
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| CDS CCA 72 bp | GTAATGAGCCACACCATGAAGATTCTTGAGCTCACTTaGACCCCAGTCACAAGCACAGAAGTGGGTACAATT | + |
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Preference number: 6 (lower is better) Translates to: VMSHTMKILELT*TPVTSTEVGTI Trigger: AATTGTACCCACTTCTGTGCTTGTGACTGGGGTCCAAGTGAGCTCAAGAATCTTCATGGTGTGGCTCATTAC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000074854.9 ENSMUST00000091429.12 ENSMUST00000114753.8 ENSMUST00000131730.7 |
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| CDS TCA 72 bp | ACCACGCTCTCTTCATTCTGGATGGGTTTTATACTGTaGGTAATGAGCCACACCATGAAGATTCTTGAGCTC | + |
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Preference number: 6 (lower is better) Translates to: TTLSSFWMGFIL*VMSHTMKILEL Trigger: GAGCTCAAGAATCTTCATGGTGTGGCTCATTACTCACAGTATAAAACCCATCCAGAATGAAGAGAGCGTGGT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000074854.9 ENSMUST00000114753.8 |
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| CDS CCA 72 bp | ACAAGCACAGAAGTGGGTACAATTCCGATCAGACAATaGACTACCTCAAGCAAAGCAAATGTTTGGAAAAAC | + |
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Preference number: 6 (lower is better) Translates to: TSTEVGTIPIRQ*TTSSKANVWKN Trigger: GTTTTTCCAAACATTTGCTTTGCTTGAGGTAGTCCATTGTCTGATCGGAATTGTACCCACTTCTGTGCTTGT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 4 transcripts: ENSMUST00000074854.9 ENSMUST00000091429.12 ENSMUST00000114753.8 ENSMUST00000131730.7 |
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