RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for HABP4 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000021476

Ensembl transcript IDs: ENSMUST00000021929.10, ENSMUST00000221904.2

Found 227 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR CCA 90 bp GTGGCTGTTAGGCCAGGGCGGGGAAGTCCTCAGGGTCATCCGGGTTaGGAGCAACATCTTGGGTCACCACTTCTGCACGGGGGCCATAGT +
Preference number: 1 (lower is better)
Translates to: VAVRPGRGSPQGHPG*EQHLGSPLLHGGHS
Trigger: ACTATGGCCCCCGTGCAGAAGTGGTGACCCAAGATGTTGCTCCCAACCCGGATGACCCTGAGGACTTCCCCGCCCTGGCCTAACAGCCAC
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000221904.2
3UTR TCA 90 bp TCTCGACAGCTGCCCAACACCTTGGCTCGTCCCTCCCACATACAATaGATCTTCCCTAGTTTTGCCGGTGGGTGGGTGGCCGGCCCTAGG +
Preference number: 1 (lower is better)
Translates to: SRQLPNTLARPSHIQ*IFPSFAGGWVAGPR
Trigger: CCTAGGGCCGGCCACCCACCCACCGGCAAAACTAGGGAAGATTCATTGTATGTGGGAGGGACGAGCCAAGGTGTTGGGCAGCTGTCGAGA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000021929.10
ENSMUST00000221904.2
3UTR GCA 90 bp GACTCTTCTCGCGGCAAGGAAAGTCTCTTCATAGTGCTGCTCTGCTaGAGGGGAGTGGCTGTTAGGCCAGGGCGGGGAAGTCCTCAGGGT +
Preference number: 1 (lower is better)
Translates to: DSSRGKESLFIVLLC*RGVAVRPGRGSPQG
Trigger: ACCCTGAGGACTTCCCCGCCCTGGCCTAACAGCCACTCCCCTGCAGCAGAGCAGCACTATGAAGAGACTTTCCTTGCCGCGAGAAGAGTC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000221904.2
3UTR CCA 90 bp CTTCATTTATACCTGGGTTCCAGTTCAGCACCATCTCAGACTTTGTaGCCAAGGCGGGTAGCACAGGTCTGGGGAGCAGGGTTCCATTGC +
Preference number: 1 (lower is better)
Translates to: LHLYLGSSSAPSQTL*PRRVAQVWGAGFHC
Trigger: GCAATGGAACCCTGCTCCCCAGACCTGTGCTACCCGCCTTGGCCACAAAGTCTGAGATGGTGCTGAACTGGAACCCAGGTATAAATGAAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000021929.10
ENSMUST00000221904.2
3UTR CCA 90 bp AACAGGCAAACCTCCCTTCCTAATCTCGACAGCTGCCCAACACCTTaGCTCGTCCCTCCCACATACAATGAATCTTCCCTAGTTTTGCCG +
Preference number: 1 (lower is better)
Translates to: NRQTSLPNLDSCPTP*LVPPTYNESSLVLP
Trigger: CGGCAAAACTAGGGAAGATTCATTGTATGTGGGAGGGACGAGCCAAGGTGTTGGGCAGCTGTCGAGATTAGGAAGGGAGGTTTGCCTGTT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000021929.10
ENSMUST00000221904.2
3UTR GCA 90 bp CAACACTCAATCAAAAAGCTGACTGTGGCAGGGCACATCTATAGCTaGAGCACCAGGGAGGCAAAGACAGTCTTCTTGGAGCTCACTAGC +
Preference number: 1 (lower is better)
Translates to: QHSIKKLTVAGHIYS*STREAKTVFLELTS
Trigger: GCTAGTGAGCTCCAAGAAGACTGTCTTTGCCTCCCTGGTGCTGCAGCTATAGATGTGCCCTGCCACAGTCAGCTTTTTGATTGAGTGTTG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000221904.2
3UTR TCA 90 bp GAGGATGTGTGCACGCACAGACCACGAGGTAGTTTAAATCACTACTaGAAACCAGTACACTTCCTCTGCTTCAGAGTGGTTGTCCCTAGT +
Preference number: 1 (lower is better)
Translates to: EDVCTHRPRGSLNHY*KPVHFLCFRVVVPS
Trigger: ACTAGGGACAACCACTCTGAAGCAGAGGAAGTGTACTGGTTTTCAGTAGTGATTTAAACTACCTCGTGGTCTGTGCGTGCACACATCCTC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000021929.10
ENSMUST00000221904.2
3UTR CCA 90 bp GGAACTGGCTTCTATTTTTACCTGTTTCCCAGCCTGATGGCACAGTaGTTTCACAGGAAGCTTTATCCTGTCTCTGGTGGAACATCCCAA +
Preference number: 1 (lower is better)
Translates to: GTGFYFYLFPSLMAQ*FHRKLYPVSGGTSQ
Trigger: TTGGGATGTTCCACCAGAGACAGGATAAAGCTTCCTGTGAAACCACTGTGCCATCAGGCTGGGAAACAGGTAAAAATAGAAGCCAGTTCC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000221904.2
3UTR TCA 90 bp ACTTCACACGACACGGGAAAAGCAACATCTATTGTTCTTAGAGTCTaGCTCTTCTCGCGGCAAGGAAAGTCTCTTCATAGTGCTGCTCTG +
Preference number: 1 (lower is better)
Translates to: TSHDTGKATSIVLRV*LFSRQGKSLHSAAL
Trigger: CAGAGCAGCACTATGAAGAGACTTTCCTTGCCGCGAGAAGAGTCAGACTCTAAGAACAATAGATGTTGCTTTTCCCGTGTCGTGTGAAGT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000021929.10
ENSMUST00000221904.2
3UTR TCA 90 bp AGACGACTGTTCATCACAGCCATCTGCATGGTTTCATGCTGTGACTaGCAACAGGAATTCTTACATTCTACACCCGGGTGCTTCAGAGTT +
Preference number: 1 (lower is better)
Translates to: RRLFITAICMVSCCD*QQEFLHSTPGCFRV
Trigger: AACTCTGAAGCACCCGGGTGTAGAATGTAAGAATTCCTGTTGTCAGTCACAGCATGAAACCATGCAGATGGCTGTGATGAACAGTCGTCT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000221904.2
3UTR TCA 90 bp ATGTGGTTTGAGGAACTGGCTTCTATTTTTACCTGTTTCCCAGCCTaGTGGCACAGTGGTTTCACAGGAAGCTTTATCCTGTCTCTGGTG +
Preference number: 1 (lower is better)
Translates to: MWFEELASIFTCFPA*WHSGFTGSFILSLV
Trigger: CACCAGAGACAGGATAAAGCTTCCTGTGAAACCACTGTGCCATCAGGCTGGGAAACAGGTAAAAATAGAAGCCAGTTCCTCAAACCACAT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000221904.2
3UTR TCA 90 bp CTAAGACACTGTCTAACACAAGCAAAACAATACTTCAGACTGGCATaGAACTTTGGCGATCTTGCACTCAGGGTCCCAAGCACCGGGAAT +
Preference number: 1 (lower is better)
Translates to: LRHCLTQAKQYFRLA*NFGDLALRVPSTGN
Trigger: ATTCCCGGTGCTTGGGACCCTGAGTGCAAGATCGCCAAAGTTTCATGCCAGTCTGAAGTATTGTTTTGCTTGTGTTAGACAGTGTCTTAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000221904.2
3UTR TCA 90 bp ATTCCAATAGATCTCTGGAGCCAGGAAGATGGATCTGATGTGGTTTaGGGAACTGGCTTCTATTTTTACCTGTTTCCCAGCCTGATGGCA +
Preference number: 1 (lower is better)
Translates to: IPIDLWSQEDGSDVV*GTGFYFYLFPSLMA
Trigger: TGCCATCAGGCTGGGAAACAGGTAAAAATAGAAGCCAGTTCCTCAAACCACATCAGATCCATCTTCCTGGCTCCAGAGATCTATTGGAAT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000221904.2
3UTR TCA 90 bp GTACAAAGGGATCACAGAACTTATGTTCCCAGCTATTGCTTCAACTaGTCAACTGACCCATTGGAAGATAAGCACTCATGGTGGTGCACA +
Preference number: 1 (lower is better)
Translates to: VQRDHRTYVPSYCFN*STDPLEDKHSWWCT
Trigger: TGTGCACCACCATGAGTGCTTATCTTCCAATGGGTCAGTTGATCAGTTGAAGCAATAGCTGGGAACATAAGTTCTGTGATCCCTTTGTAC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000221904.2
3UTR CCA 90 bp GTAATATCCAGCAGGGAAGACGACTGTTCATCACAGCCATCTGCATaGTTTCATGCTGTGACTGACAACAGGAATTCTTACATTCTACAC +
Preference number: 1 (lower is better)
Translates to: VISSREDDCSSQPSA*FHAVTDNRNSYILH
Trigger: GTGTAGAATGTAAGAATTCCTGTTGTCAGTCACAGCATGAAACCATGCAGATGGCTGTGATGAACAGTCGTCTTCCCTGCTGGATATTAC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000221904.2
3UTR TCA 90 bp GGGCCACACAACCTGAGGCTGAACCAAAGCTTTTCTCACTATAAATaGCCTCAGGCATTTTTCAACAGTGCTAGAAATCTAACAAACTTC +
Preference number: 1 (lower is better)
Translates to: GPHNLRLNQSFSHYK*PQAFFNSARNLTNF
Trigger: GAAGTTTGTTAGATTTCTAGCACTGTTGAAAAATGCCTGAGGTCATTTATAGTGAGAAAAGCTTTGGTTCAGCCTCAGGTTGTGTGGCCC
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000221904.2
3UTR-3UTR TCA 90 bp TCTGGCTCCCCGACCAGGGCGAGGGAGGTTACCAAAGTTAATCTCCAGCTGGGAGCTGTTTGGGGTGATTaGGCCTCTGAGGTGGTCCCT +
Preference number: 2 (lower is better)
Translates to: SGSPTRAREVTKVNLQLGAVWGD*ASEVVP
Trigger: AGGGACCACCTCAGAGGCTCAATCACCCCAAACAGC...TCCCAGCTGGAGATTAACTTTGGTAACCTCCCTCGCCCTGGTCGGGGAGCCAGA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000221904.2
3UTR-3UTR GCA 90 bp AGTCCTCAGGGTCATCCGGGTTGGGAGCAACATCTTGGGTCACCACTTCTGCACGGATCTGCCTGCCACTaGCTCCCAAGTGCTAGGTTT +
Preference number: 2 (lower is better)
Translates to: SPQGHPGWEQHLGSPLLHGSACH*LPSARF
Trigger: AAACCTAGCACTTGGGAGGCAGTGGCAGGCAGATCC...GTGCAGAAGTGGTGACCCAAGATGTTGCTCCCAACCCGGATGACCCTGAGGACT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000221904.2
3UTR-3UTR TCA 90 bp TCGCAGTCAGGAGATGTGACTGAGTTACAAGTCAGTCTGCTCAGAGTCCACAGTAGACCAGGCTGGCCTTaGACTCGGGATCTGCCTGCC +
Preference number: 2 (lower is better)
Translates to: SQSGDVTELQVSLLRVHSRPGWP*TRDLPA
Trigger: GGCAGGCAGATCCCGAGTTCAAGGCCAGCCTGGTCT...ACTGTGGACTCTGAGCAGACTGACTTGTAACTCAGTCACATCTCCTGACTGCGA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000021929.10
ENSMUST00000221904.2
3UTR-3UTR TCA 90 bp AGTCCTCAGGGTCATCCGGGTTGGGAGCAACATCTTGGGTCACCACTTCTGCACGCTTGGTCTACAGAGTaGGTTCCAGGACAAGCAGGA +
Preference number: 2 (lower is better)
Translates to: SPQGHPGWEQHLGSPLLHAWSTE*VPGQAG
Trigger: TCCTGCTTGTCCTGGAACTCACTCTGTAGACCAAGC...GTGCAGAAGTGGTGACCCAAGATGTTGCTCCCAACCCGGATGACCCTGAGGACT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000221904.2
3UTR-3UTR GCA 90 bp GGTAGAAGTAAGTCCTGCTGGATGCGGTGGCTCGCGCCTTTAGTCCCAACATTTCTTGAACTCGGGATCTaGCTGCCACTGCCTCCCAAG +
Preference number: 2 (lower is better)
Translates to: GRSKSCWMRWLAPLVPTFLELGI*LPLPPK
Trigger: CTTGGGAGGCAGTGGCAGGCAGATCCCGAGTTCAAG...AAATGTTGGGACTAAAGGCGCGAGCCACCGCATCCAGCAGGACTTACTTCTACC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000221904.2
3UTR-3UTR TCA 90 bp TACAATGAATCTTCCCTAGTTTTGCCGGTGGGTGGGTGGCCGGCCCTAGGTCTCCGCAGTCAGGAGATGTaGCTGAGTTACAAGTCAGTC +
Preference number: 2 (lower is better)
Translates to: YNESSLVLPVGGWPALGLRSQEM*LSYKSV
Trigger: GACTGACTTGTAACTCAGTCACATCTCCTGACTGCG...GAGACCTAGGGCCGGCCACCCACCCACCGGCAAAACTAGGGAAGATTCATTGTA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000021929.10
ENSMUST00000221904.2
3UTR-3UTR TCA 90 bp AGTCCTCAGGGTCATCCGGGTTGGGAGCAACATCTTGGGTCACCACTTCTGCACCTGTGCCTCTTTCACTaGGAGACCAGACTTTCAAGG +
Preference number: 2 (lower is better)
Translates to: SPQGHPGWEQHLGSPLLHLCLFH*ETRLSR
Trigger: CCTTGAAAGTCTGGTCTCTCAGTGAAAGAGGCACAG...GTGCAGAAGTGGTGACCCAAGATGTTGCTCCCAACCCGGATGACCCTGAGGACT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000221904.2
3UTR-3UTR GCA 90 bp GAAGTCCTCAGGGTCATCCGGGTTGGGAGCAACATCTTGGGTCACCACTTCTGCAAACTTTGGCGATCTTaGACTCAGGGTCCCAAGCAC +
Preference number: 2 (lower is better)
Translates to: EVLRVIRVGSNILGHHFCKLWRS*TQGPKH
Trigger: GTGCTTGGGACCCTGAGTGCAAGATCGCCAAAGTTT...GCAGAAGTGGTGACCCAAGATGTTGCTCCCAACCCGGATGACCCTGAGGACTTC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000221904.2
3UTR CAA 90 bp AACCTTCATTTATACCTGGGTTCCAGTTCAGCACCATCTCAGACTTaGTGGCCAAGGCGGGTAGCACAGGTCTGGGGAGCAGGGTTCCAT +
Preference number: 2 (lower is better)
Translates to: NLHLYLGSSSAPSQT*WPRRVAQVWGAGFH
Trigger: ATGGAACCCTGCTCCCCAGACCTGTGCTACCCGCCTTGGCCACAAAGTCTGAGATGGTGCTGAACTGGAACCCAGGTATAAATGAAGGTT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000021929.10
ENSMUST00000221904.2
3UTR-3UTR TCA 90 bp TACAATGAATCTTCCCTAGTTTTGCCGGTGGGTGGGTGGCCGGCCCTAGGTCTCATTGTTCTTAGAGTCTaGCTCTTCTCGCGGCAAGGA +
Preference number: 2 (lower is better)
Translates to: YNESSLVLPVGGWPALGLIVLRV*LFSRQG
Trigger: TCCTTGCCGCGAGAAGAGTCAGACTCTAAGAACAAT...GAGACCTAGGGCCGGCCACCCACCCACCGGCAAAACTAGGGAAGATTCATTGTA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000021929.10
ENSMUST00000221904.2
3UTR-3UTR GCA 90 bp GGTAGAAGTAAGTCCTGCTGGATGCGGTGGCTCGCGCCTTTAGTCCCAACATTTAAGCACTCATGGTGGTaGACAGCTCAGGGTGCTGAA +
Preference number: 2 (lower is better)
Translates to: GRSKSCWMRWLAPLVPTFKHSWW*TAQGAE
Trigger: TTCAGCACCCTGAGCTGTGCACCACCATGAGTGCTT...AAATGTTGGGACTAAAGGCGCGAGCCACCGCATCCAGCAGGACTTACTTCTACC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000221904.2
3UTR-3UTR CCA 90 bp TACAATGAATCTTCCCTAGTTTTGCCGGTGGGTGGGTGGCCGGCCCTAGGTCTCATTGAGCCTCTGAGGTaGTCCCTAACCTTAAACCTC +
Preference number: 2 (lower is better)
Translates to: YNESSLVLPVGGWPALGLIEPLR*SLTLNL
Trigger: GAGGTTTAAGGTTAGGGACCACCTCAGAGGCTCAAT...GAGACCTAGGGCCGGCCACCCACCCACCGGCAAAACTAGGGAAGATTCATTGTA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000021929.10
ENSMUST00000221904.2
3UTR-3UTR GCA 90 bp CAGCCGAGGGGAGGGCCCAGCCCATGTTCGCAGTCAGGAGATGTGACTGAGTTACAGAACAATAAGGTCTaGACAACACTGAAGTCCTTA +
Preference number: 2 (lower is better)
Translates to: QPRGGPSPCSQSGDVTELQNNKV*TTLKSL
Trigger: TAAGGACTTCAGTGTTGTGCAGACCTTATTGTTCTG...TAACTCAGTCACATCTCCTGACTGCGAACATGGGCTGGGCCCTCCCCTCGGCTG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000221904.2
3UTR-3UTR CCA 90 bp GAAGTCCTCAGGGTCATCCGGGTTGGGAGCAACATCTTGGGTCACCACTTCTGCGCTTTATCCTGTCTCTaGTGGAACATCCCAAAACGT +
Preference number: 2 (lower is better)
Translates to: EVLRVIRVGSNILGHHFCALSCL*WNIPKR
Trigger: ACGTTTTGGGATGTTCCACCAGAGACAGGATAAAGC...GCAGAAGTGGTGACCCAAGATGTTGCTCCCAACCCGGATGACCCTGAGGACTTC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000221904.2
3UTR-3UTR CCA 90 bp CTTCACACGACACGGGAAAAGCAACATCTATTGTTCTTAGAGTCTGACTCTTCTTCTGCTGCAGGGGAGTaGCTGTTAGGCCAGGGCGGG +
Preference number: 2 (lower is better)
Translates to: LHTTREKQHLLFLESDSSSAAGE*LLGQGG
Trigger: CCCGCCCTGGCCTAACAGCCACTCCCCTGCAGCAGA...AGAAGAGTCAGACTCTAAGAACAATAGATGTTGCTTTTCCCGTGTCGTGTGAAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000221904.2
3UTR CAA 90 bp GGAATGGTGTCTGACCGTGCTATCAGCAGGCCAGGGGCTTCTCTTTaGTTTCTAGAGCTGGGCAGAGGAAGCAGGGCTATTAAAATACTG +
Preference number: 2 (lower is better)
Translates to: GMVSDRAISRPGASL*FLELGRGSRAIKIL
Trigger: CAGTATTTTAATAGCCCTGCTTCCTCTGCCCAGCTCTAGAAACAAAAGAGAAGCCCCTGGCCTGCTGATAGCACGGTCAGACACCATTCC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000221904.2
3UTR-3UTR TCA 90 bp CCTAGTGCACAATGTCTAAACCACAACTCAGGGATTTTCTCAGAATTGAGCAGTAGACCAGGCTGGCCTTaGACTCGGGATCTGCCTGCC +
Preference number: 2 (lower is better)
Translates to: PSAQCLNHNSGIFSELSSRPGWP*TRDLPA
Trigger: GGCAGGCAGATCCCGAGTTCAAGGCCAGCCTGGTCT...ACTGCTCAATTCTGAGAAAATCCCTGAGTTGTGGTTTAGACATTGTGCACTAGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000021929.10
ENSMUST00000221904.2
3UTR-3UTR TCA 90 bp GAGGTGGTCCCTAACCTTAAACCTCCACCAGAGGCCTTAAGAACAACACCGGAACACAGCTCAGGGTGCTaGAGCAGGAGGATAGTTTTA +
Preference number: 2 (lower is better)
Translates to: EVVPNLKPPPEALRTTPEHSSGC*SRRIVL
Trigger: TAAAACTATCCTCCTGCTTCAGCACCCTGAGCTGTG...TTCCGGTGTTGTTCTTAAGGCCTCTGGTGGAGGTTTAAGGTTAGGGACCACCTC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000221904.2
3UTR-3UTR TCA 90 bp AGTCCTCAGGGTCATCCGGGTTGGGAGCAACATCTTGGGTCACCACTTCTGCACGGATCTGATGTGGTTTaGGGAACTGGCTTCTATTTT +
Preference number: 2 (lower is better)
Translates to: SPQGHPGWEQHLGSPLLHGSDVV*GTGFYF
Trigger: AAAATAGAAGCCAGTTCCTCAAACCACATCAGATCC...GTGCAGAAGTGGTGACCCAAGATGTTGCTCCCAACCCGGATGACCCTGAGGACT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000221904.2
3UTR-3UTR GCA 90 bp TTTCTCGTCTTGTTTTTCAAGACTCACTCTGTAGACCAGGCTGGCCTTGAACTCCTAGGTTTAAAGGCGTaGGCCACCACGCCCAGCAGT +
Preference number: 2 (lower is better)
Translates to: FLVLFFKTHSVDQAGLELLGLKA*ATTPSS
Trigger: ACTGCTGGGCGTGGTGGCGCACGCCTTTAAACCTAG...GAGTTCAAGGCCAGCCTGGTCTACAGAGTGAGTCTTGAAAAACAAGACGAGAAA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000021929.10
ENSMUST00000221904.2
3UTR-3UTR GCA 90 bp ACTACTGAAAACCAGTACACTTCCTCTGCTTCAGAGTGGTTGTCCCTAGTGCACGGATCTGCCTGCCACTaGCTCCCAAGTGCTAGGTTT +
Preference number: 2 (lower is better)
Translates to: TTENQYTSSASEWLSLVHGSACH*LPSARF
Trigger: AAACCTAGCACTTGGGAGGCAGTGGCAGGCAGATCC...GTGCACTAGGGACAACCACTCTGAAGCAGAGGAAGTGTACTGGTTTTCAGTAGT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000021929.10
ENSMUST00000221904.2
3UTR-3UTR CCA 90 bp ACTACTGAAAACCAGTACACTTCCTCTGCTTCAGAGTGGTTGTCCCTAGTGCACGGGGTCAGAAGCAGGTaGTCACCCAAAGCAACATCC +
Preference number: 2 (lower is better)
Translates to: TTENQYTSSASEWLSLVHGVRSR*SPKATS
Trigger: GGATGTTGCTTTGGGTGACCACCTGCTTCTGACCCC...GTGCACTAGGGACAACCACTCTGAAGCAGAGGAAGTGTACTGGTTTTCAGTAGT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000021929.10
ENSMUST00000221904.2
3UTR-3UTR TCA 90 bp TACAAAAGTCTCTATCTGGGGAAAGGGCCTGACCTCATGGGAACTCCACAGAGCTATTTCCACACCCACTaGGACTGGGCTATTATGTGC +
Preference number: 2 (lower is better)
Translates to: YKSLYLGKGPDLMGTPQSYFHTH*DWAIMC
Trigger: GCACATAATAGCCCAGTCTCAGTGGGTGTGGAAATA...GCTCTGTGGAGTTCCCATGAGGTCAGGCCCTTTCCCCAGATAGAGACTTTTGTA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000221904.2
3UTR-3UTR GCA 90 bp TACAATGAATCTTCCCTAGTTTTGCCGGTGGGTGGGTGGCCGGCCCTAGGTCTCAGAGGAGAACAAGAATaGCAAATAGCAAGGTCCTAT +
Preference number: 2 (lower is better)
Translates to: YNESSLVLPVGGWPALGLRGEQE*QIARSY
Trigger: ATAGGACCTTGCTATTTGGCATTCTTGTTCTCCTCT...GAGACCTAGGGCCGGCCACCCACCCACCGGCAAAACTAGGGAAGATTCATTGTA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000221904.2
3UTR-3UTR GCA 90 bp AGGGAAGACGACTGTTCATCACAGCCATCTGCATGGTTTCATGCTGTGACTGACGAACAGAAACAAGAATaGCAAGCGGCAGGCCAGCAA +
Preference number: 2 (lower is better)
Translates to: REDDCSSQPSAWFHAVTDEQKQE*QAAGQQ
Trigger: TTGCTGGCCTGCCGCTTGGCATTCTTGTTTCTGTTC...GTCAGTCACAGCATGAAACCATGCAGATGGCTGTGATGAACAGTCGTCTTCCCT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000221904.2
3UTR-3UTR TCA 90 bp CTTAAACCTCCACCAGAGGCCTTAAGAACAACACCGGAACTGGGGCCCAGCCGAAGTTTAAATCACTACTaGAAACCAGTACACTTCCTC +
Preference number: 2 (lower is better)
Translates to: LKPPPEALRTTPELGPSRSLNHY*KPVHFL
Trigger: GAGGAAGTGTACTGGTTTTCAGTAGTGATTTAAACT...TCGGCTGGGCCCCAGTTCCGGTGTTGTTCTTAAGGCCTCTGGTGGAGGTTTAAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000021929.10
ENSMUST00000221904.2
3UTR-3UTR TCA 90 bp ACTACTGAAAACCAGTACACTTCCTCTGCTTCAGAGTGGTTGTCCCTAGTGCACCGCAGTCAGGAGATGTaGCTGAGTTACAAGTCAGTC +
Preference number: 2 (lower is better)
Translates to: TTENQYTSSASEWLSLVHRSQEM*LSYKSV
Trigger: GACTGACTTGTAACTCAGTCACATCTCCTGACTGCG...GTGCACTAGGGACAACCACTCTGAAGCAGAGGAAGTGTACTGGTTTTCAGTAGT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000021929.10
ENSMUST00000221904.2
3UTR-3UTR CCA 90 bp GACTTGAGTTTATATGCCCAACACTCAATCAAAAAGCTGACTGTGGCAGGGCACGATAAGCACTCATGGTaGTGCACAGCTCAGGGTGCT +
Preference number: 2 (lower is better)
Translates to: DLSLYAQHSIKKLTVAGHDKHSW*CTAQGA
Trigger: AGCACCCTGAGCTGTGCACCACCATGAGTGCTTATC...GTGCCCTGCCACAGTCAGCTTTTTGATTGAGTGTTGGGCATATAAACTCAAGTC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000221904.2
3UTR-3UTR CCA 90 bp GAAGTCCTCAGGGTCATCCGGGTTGGGAGCAACATCTTGGGTCACCACTTCTGCTTTAAGAACAATCCCTaGCTAAATTCTGCAATGACC +
Preference number: 2 (lower is better)
Translates to: EVLRVIRVGSNILGHHFCFKNNP*LNSAMT
Trigger: GGTCATTGCAGAATTTAGCCAGGGATTGTTCTTAAA...GCAGAAGTGGTGACCCAAGATGTTGCTCCCAACCCGGATGACCCTGAGGACTTC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000221904.2
3UTR CAA 90 bp AGCGGTTCTCCACGTGTCCTGAAATACTCAAGGACTTTTCTCGTCTaGTTTTTCAAGACTCACTCTGTAGACCAGGCTGGCCTTGAACTC +
Preference number: 2 (lower is better)
Translates to: SGSPRVLKYSRTFLV*FFKTHSVDQAGLEL
Trigger: GAGTTCAAGGCCAGCCTGGTCTACAGAGTGAGTCTTGAAAAACAAGACGAGAAAAGTCCTTGAGTATTTCAGGACACGTGGAGAACCGCT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000021929.10
ENSMUST00000221904.2
3UTR CAA 90 bp GGGGTCAGAAGCAGGTGGTCACCCAAAGCAACATCCTCATCAACTTaGATGACTCAACCAAACCCCAAGAGTTCAGAGGGAATACAATAC +
Preference number: 2 (lower is better)
Translates to: GVRSRWSPKATSSST*MTQPNPKSSEGIQY
Trigger: GTATTGTATTCCCTCTGAACTCTTGGGGTTTGGTTGAGTCATCAAAGTTGATGAGGATGTTGCTTTGGGTGACCACCTGCTTCTGACCCC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000021929.10
ENSMUST00000221904.2
3UTR-3UTR TCA 90 bp ACATGGGGTCAGAAGCAGGTGGTCACCCAAAGCAACATCCTCATCAACTTTGATCCCTCCCACATACAATaGATCTTCCCTAGTTTTGCC +
Preference number: 2 (lower is better)
Translates to: TWGQKQVVTQSNILINFDPSHIQ*IFPSFA
Trigger: GGCAAAACTAGGGAAGATTCATTGTATGTGGGAGGG...ATCAAAGTTGATGAGGATGTTGCTTTGGGTGACCACCTGCTTCTGACCCCATGT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000021929.10
ENSMUST00000221904.2
3UTR CAA 90 bp AGGCAAAGACAGTCTTCTTGGAGCTCACTAGCCAGTCTAGTTGCATaGGTGAGGCCCAGGTTCACTGAGATCTTGTCTCGGAAAATAAAA +
Preference number: 2 (lower is better)
Translates to: RQRQSSWSSLASLVA*VRPRFTEILSRKIK
Trigger: TTTTATTTTCCGAGACAAGATCTCAGTGAACCTGGGCCTCACCAATGCAACTAGACTGGCTAGTGAGCTCCAAGAAGACTGTCTTTGCCT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000221904.2
3UTR-3UTR TCA 90 bp GACTTGAGTTTATATGCCCAACACTCAATCAAAAAGCTGACTGTGGCAGGGCACATTGTTCTTAGAGTCTaGCTCTTCTCGCGGCAAGGA +
Preference number: 2 (lower is better)
Translates to: DLSLYAQHSIKKLTVAGHIVLRV*LFSRQG
Trigger: TCCTTGCCGCGAGAAGAGTCAGACTCTAAGAACAAT...GTGCCCTGCCACAGTCAGCTTTTTGATTGAGTGTTGGGCATATAAACTCAAGTC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000221904.2
3UTR-3UTR TCA 90 bp ACTACTGAAAACCAGTACACTTCCTCTGCTTCAGAGTGGTTGTCCCTAGTGCACAGCTATTGCTTCAACTaGTCAACTGACCCATTGGAA +
Preference number: 2 (lower is better)
Translates to: TTENQYTSSASEWLSLVHSYCFN*STDPLE
Trigger: TTCCAATGGGTCAGTTGATCAGTTGAAGCAATAGCT...GTGCACTAGGGACAACCACTCTGAAGCAGAGGAAGTGTACTGGTTTTCAGTAGT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000221904.2
3UTR-3UTR GCA 90 bp TTTCTCGTCTTGTTTTTCAAGACTCACTCTGTAGACCAGGCTGGCCTTGAACTCAGTGCACCTGGAAACTaGCATGATGTGGATCTCAAA +
Preference number: 2 (lower is better)
Translates to: FLVLFFKTHSVDQAGLELSAPGN*HDVDLK
Trigger: TTTGAGATCCACATCATGGCAGTTTCCAGGTGCACT...GAGTTCAAGGCCAGCCTGGTCTACAGAGTGAGTCTTGAAAAACAAGACGAGAAA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000221904.2
3UTR-3UTR GCA 90 bp TTTCTCGTCTTGTTTTTCAAGACTCACTCTGTAGACCAGGCTGGCCTTGAACTCTGCACATTTTTAATGTaGTGCCCTGGTGGTCTGTGT +
Preference number: 2 (lower is better)
Translates to: FLVLFFKTHSVDQAGLELCTFLM*CPGGLC
Trigger: ACACAGACCACCAGGGCAGCACATTAAAAATGTGCA...GAGTTCAAGGCCAGCCTGGTCTACAGAGTGAGTCTTGAAAAACAAGACGAGAAA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000221904.2
3UTR-3UTR GCA 90 bp CTTTCCGGAAGACGTGAGACTCATCCTCATAGTCCTCCTTCACCATCTGAAAGAAGCCATCTCCACAGATaGACATTTTTAATGTGCTGC +
Preference number: 2 (lower is better)
Translates to: LSGRRETHPHSPPSPSERSHLHR*TFLMCC
Trigger: GCAGCACATTAAAAATGTGCATCTGTGGAGATGGCT...TCTTTCAGATGGTGAAGGAGGACTATGAGGATGAGTCTCACGTCTTCCGGAAAG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000221904.2
3UTR-3UTR CCA 90 bp ACTACTGAAAACCAGTACACTTCCTCTGCTTCAGAGTGGTTGTCCCTAGTGCACACCTTCATTTATACCTaGGTTCCAGTTCAGCACCAT +
Preference number: 2 (lower is better)
Translates to: TTENQYTSSASEWLSLVHTFIYT*VPVQHH
Trigger: ATGGTGCTGAACTGGAACCCAGGTATAAATGAAGGT...GTGCACTAGGGACAACCACTCTGAAGCAGAGGAAGTGTACTGGTTTTCAGTAGT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000021929.10
ENSMUST00000221904.2
3UTR-3UTR CCA 90 bp CTTTCCGGAAGACGTGAGACTCATCCTCATAGTCCTCCTTCACCATCTGAAAGAATTCCAATAGATCTCTaGAGCCAGGAAGATGGATCT +
Preference number: 2 (lower is better)
Translates to: LSGRRETHPHSPPSPSERIPIDL*SQEDGS
Trigger: AGATCCATCTTCCTGGCTCCAGAGATCTATTGGAAT...TCTTTCAGATGGTGAAGGAGGACTATGAGGATGAGTCTCACGTCTTCCGGAAAG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000221904.2
3UTR-3UTR TCA 90 bp CTTCACACGACACGGGAAAAGCAACATCTATTGTTCTTAGAGTCTGACTCTTCTGAGAGGATTGCATTCTaGTCATCAAAAGGCAGAGCC +
Preference number: 2 (lower is better)
Translates to: LHTTREKQHLLFLESDSSERIAF*SSKGRA
Trigger: GGCTCTGCCTTTTGATGATCAGAATGCAATCCTCTC...AGAAGAGTCAGACTCTAAGAACAATAGATGTTGCTTTTCCCGTGTCGTGTGAAG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000221904.2
3UTR-3UTR TCA 90 bp ACATGGGGTCAGAAGCAGGTGGTCACCCAAAGCAACATCCTCATCAACTTTGATGTTTCATGCTGTGACTaGCAACAGGAATTCTTACAT +
Preference number: 2 (lower is better)
Translates to: TWGQKQVVTQSNILINFDVSCCD*QQEFLH
Trigger: ATGTAAGAATTCCTGTTGTCAGTCACAGCATGAAAC...ATCAAAGTTGATGAGGATGTTGCTTTGGGTGACCACCTGCTTCTGACCCCATGT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000221904.2
3UTR-3UTR CCA 90 bp ACTACTGAAAACCAGTACACTTCCTCTGCTTCAGAGTGGTTGTCCCTAGTGCACTGTGGTTTGAGGAACTaGCTTCTATTTTTACCTGTT +
Preference number: 2 (lower is better)
Translates to: TTENQYTSSASEWLSLVHCGLRN*LLFLPV
Trigger: AACAGGTAAAAATAGAAGCCAGTTCCTCAAACCACA...GTGCACTAGGGACAACCACTCTGAAGCAGAGGAAGTGTACTGGTTTTCAGTAGT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000221904.2
3UTR-3UTR CCA 90 bp CTTCACACGACACGGGAAAAGCAACATCTATTGTTCTTAGAGTCTGACTCTTCTGATCAACTGACCCATTaGAAGATAAGCACTCATGGT +
Preference number: 2 (lower is better)
Translates to: LHTTREKQHLLFLESDSSDQLTH*KISTHG
Trigger: ACCATGAGTGCTTATCTTCCAATGGGTCAGTTGATC...AGAAGAGTCAGACTCTAAGAACAATAGATGTTGCTTTTCCCGTGTCGTGTGAAG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000221904.2
3UTR-3UTR CCA 90 bp AAGCTCGGTGACTCAGCTAACTTGGTTACCTCAAATATTCCAATAGATCTCTGGTTTTGGGCCACAGTCTaGCAAGCAAATAAGGTTTTC +
Preference number: 2 (lower is better)
Translates to: KLGDSANLVTSNIPIDLWFWATV*QANKVF
Trigger: GAAAACCTTATTTGCTTGCCAGACTGTGGCCCAAAA...CCAGAGATCTATTGGAATATTTGAGGTAACCAAGTTAGCTGAGTCACCGAGCTT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000221904.2
3UTR CAA 90 bp GTGCGCCACCACGCCCAGCAGTTCTATTTTCTAACTTACTTTACTTaGTACTTCTGTGCTGGGATTGTTAGAATCTATGTACACATTTTA +
Preference number: 2 (lower is better)
Translates to: VRHHAQQFYFLTYFT*YFCAGIVRIYVHIL
Trigger: TAAAATGTGTACATAGATTCTAACAATCCCAGCACAGAAGTACAAAGTAAAGTAAGTTAGAAAATAGAACTGCTGGGCGTGGTGGCGCAC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000021929.10
ENSMUST00000221904.2
3UTR-3UTR GCA 90 bp CTTCACACGACACGGGAAAAGCAACATCTATTGTTCTTAGAGTCTGACTCTTCTGCAAATAAGGTTTTCTaGCATCTGTTTGCATTTTTG +
Preference number: 2 (lower is better)
Translates to: LHTTREKQHLLFLESDSSANKVF*HLFAFL
Trigger: CAAAAATGCAAACAGATGGCAGAAAACCTTATTTGC...AGAAGAGTCAGACTCTAAGAACAATAGATGTTGCTTTTCCCGTGTCGTGTGAAG
39% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000221904.2
3UTR GCA 72 bp TCTCTGTTCTTCTCATTCTCCCTCGGCCTCCCCGGGTaGTGCCTCTGGCTCCCCGACCAGGGCGAGGGAGGT +
Preference number: 3 (lower is better)
Translates to: SLFFSFSLGLPG*CLWLPDQGEGG
Trigger: ACCTCCCTCGCCCTGGTCGGGGAGCCAGAGGCAGCACCCGGGGAGGCCGAGGGAGAATGAGAAGAACAGAGA
67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000221904.2
3UTR CCA 72 bp TTCTCATTCTCCCTCGGCCTCCCCGGGTGCTGCCTCTaGCTCCCCGACCAGGGCGAGGGAGGTTACCAAAGT +
Preference number: 3 (lower is better)
Translates to: FSFSLGLPGCCL*LPDQGEGGYQS
Trigger: ACTTTGGTAACCTCCCTCGCCCTGGTCGGGGAGCCAGAGGCAGCACCCGGGGAGGCCGAGGGAGAATGAGAA
65% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000221904.2
3UTR CCA 72 bp AGGCCAGGGCGGGGAAGTCCTCAGGGTCATCCGGGTTaGGAGCAACATCTTGGGTCACCACTTCTGCACGGG +
Preference number: 3 (lower is better)
Translates to: RPGRGSPQGHPG*EQHLGSPLLHG
Trigger: CCCGTGCAGAAGTGGTGACCCAAGATGTTGCTCCCAACCCGGATGACCCTGAGGACTTCCCCGCCCTGGCCT
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000221904.2
3UTR TCA 72 bp CTGCCCAACACCTTGGCTCGTCCCTCCCACATACAATaGATCTTCCCTAGTTTTGCCGGTGGGTGGGTGGCC +
Preference number: 3 (lower is better)
Translates to: LPNTLARPSHIQ*IFPSFAGGWVA
Trigger: GGCCACCCACCCACCGGCAAAACTAGGGAAGATTCATTGTATGTGGGAGGGACGAGCCAAGGTGTTGGGCAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000021929.10
ENSMUST00000221904.2
3UTR-3UTR CAA 90 bp GGTAGAAGTAAGTCCTGCTGGATGCGGTGGCTCGCGCCTTTAGTCCCAACATTTGAATCTTCCCTAGTTTaGCCGGTGGGTGGGTGGCCG +
Preference number: 3 (lower is better)
Translates to: GRSKSCWMRWLAPLVPTFESSLV*PVGGWP
Trigger: CGGCCACCCACCCACCGGCAAAACTAGGGAAGATTC...AAATGTTGGGACTAAAGGCGCGAGCCACCGCATCCAGCAGGACTTACTTCTACC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000221904.2
3UTR-3UTR CAA 90 bp TCTGGCTCCCCGACCAGGGCGAGGGAGGTTACCAAAGTTAATCTCCAGCTGGGACCAGGGGCTTCTCTTTaGTTTCTAGAGCTGGGCAGA +
Preference number: 3 (lower is better)
Translates to: SGSPTRAREVTKVNLQLGPGASL*FLELGR
Trigger: TCTGCCCAGCTCTAGAAACAAAAGAGAAGCCCCTGG...TCCCAGCTGGAGATTAACTTTGGTAACCTCCCTCGCCCTGGTCGGGGAGCCAGA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000221904.2
3UTR TCA 72 bp GGGGAGGGCCCAGCCCATGTTCGCAGTCAGGAGATGTaGCTGAGTTACAAGTCAGTCTGCTCAGAGTCCACA +
Preference number: 3 (lower is better)
Translates to: GEGPAHVRSQEM*LSYKSVCSEST
Trigger: TGTGGACTCTGAGCAGACTGACTTGTAACTCAGTCACATCTCCTGACTGCGAACATGGGCTGGGCCCTCCCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000021929.10
ENSMUST00000221904.2
3UTR TCA 72 bp GTGGCCGGCCCTAGGTCTCAAGCTGTTTGGGGTGATTaGGCCTCTGAGGTGGTCCCTAACCTTAAACCTCCA +
Preference number: 3 (lower is better)
Translates to: VAGPRSQAVWGD*ASEVVPNLKPP
Trigger: TGGAGGTTTAAGGTTAGGGACCACCTCAGAGGCTCAATCACCCCAAACAGCTTGAGACCTAGGGCCGGCCAC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000021929.10
ENSMUST00000221904.2
3UTR GCA 72 bp GGGTCAGACGGGCACAGGCGCAGCCATCTCCACAGATaGACATTTTTAATGTGCTGCCCTGGTGGTCTGTGT +
Preference number: 3 (lower is better)
Translates to: GSDGHRRSHLHR*TFLMCCPGGLC
Trigger: ACACAGACCACCAGGGCAGCACATTAAAAATGTGCATCTGTGGAGATGGCTGCGCCTGTGCCCGTCTGACCC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000221904.2
3UTR TCA 72 bp AGGGCCCAGCCCATGTTCGCAGTCAGGAGATGTGACTaGGTTACAAGTCAGTCTGCTCAGAGTCCACAGTGC +
Preference number: 3 (lower is better)
Translates to: RAQPMFAVRRCD*VTSQSAQSPQC
Trigger: GCACTGTGGACTCTGAGCAGACTGACTTGTAACTCAGTCACATCTCCTGACTGCGAACATGGGCTGGGCCCT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000021929.10
ENSMUST00000221904.2
3UTR CCA 72 bp TACAATGAATCTTCCCTAGTTTTGCCGGTGGGTGGGTaGCCGGCCCTAGGTCTCAAGCTGTTTGGGGTGATT +
Preference number: 3 (lower is better)
Translates to: YNESSLVLPVGG*PALGLKLFGVI
Trigger: AATCACCCCAAACAGCTTGAGACCTAGGGCCGGCCACCCACCCACCGGCAAAACTAGGGAAGATTCATTGTA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000021929.10
ENSMUST00000221904.2
3UTR CCA 72 bp CCAGGGCGAGGGAGGTTACCAAAGTTAATCTCCAGCTaGGATGTGATGTCATTGGCAGCTTTCCGGAAGACG +
Preference number: 3 (lower is better)
Translates to: PGRGRLPKLISS*DVMSLAAFRKT
Trigger: CGTCTTCCGGAAAGCTGCCAATGACATCACATCCCAGCTGGAGATTAACTTTGGTAACCTCCCTCGCCCTGG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000221904.2
3UTR GCA 72 bp ATCCGGGTTGGGAGCAACATCTTGGGTCACCACTTCTaGACGGGGGCCATAGTTCTCTGTTCTTCTCATTCT +
Preference number: 3 (lower is better)
Translates to: IRVGSNILGHHF*TGAIVLCSSHS
Trigger: AGAATGAGAAGAACAGAGAACTATGGCCCCCGTGCAGAAGTGGTGACCCAAGATGTTGCTCCCAACCCGGAT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000221904.2
3UTR GCA 72 bp ATCAAAAAGCTGACTGTGGCAGGGCACATCTATAGCTaGAGCACCAGGGAGGCAAAGACAGTCTTCTTGGAG +
Preference number: 3 (lower is better)
Translates to: IKKLTVAGHIYS*STREAKTVFLE
Trigger: CTCCAAGAAGACTGTCTTTGCCTCCCTGGTGCTGCAGCTATAGATGTGCCCTGCCACAGTCAGCTTTTTGAT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000221904.2
3UTR CCA 72 bp GTCTATTCAGGTAGAAGTAAGTCCTGCTGGATGCGGTaGCTCGCGCCTTTAGTCCCAACATTTAGGAGACTG +
Preference number: 3 (lower is better)
Translates to: VYSGRSKSCWMR*LAPLVPTFRRL
Trigger: CAGTCTCCTAAATGTTGGGACTAAAGGCGCGAGCCACCGCATCCAGCAGGACTTACTTCTACCTGAATAGAC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000221904.2
3UTR-3UTR CAA 90 bp CTTAAACCTCCACCAGAGGCCTTAAGAACAACACCGGAACTGGGGCCCAGCCGATACAAAATAAATGTTTaGGTGGTGGGGAGAGGAGAA +
Preference number: 3 (lower is better)
Translates to: LKPPPEALRTTPELGPSRYKINV*VVGRGE
Trigger: TTCTCCTCTCCCCACCACCAAAACATTTATTTTGTA...TCGGCTGGGCCCCAGTTCCGGTGTTGTTCTTAAGGCCTCTGGTGGAGGTTTAAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000221904.2
3UTR CCA 72 bp GTTCTGGATAGAGACACTTGGACACGTGGCTGGTTTTaGGCCACAGTCTGGCAAGCAAATAAGGTTTTCTGC +
Preference number: 3 (lower is better)
Translates to: VLDRDTWTRGWF*ATVWQANKVFC
Trigger: GCAGAAAACCTTATTTGCTTGCCAGACTGTGGCCCAAAACCAGCCACGTGTCCAAGTGTCTCTATCCAGAAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000221904.2
3UTR GCA 72 bp TCACCAGTCATGACTGACCAAAGTGCACCTGGAAACTaGCATGATGTGGATCTCAAAGGACCCATAGTGATG +
Preference number: 3 (lower is better)
Translates to: SPVMTDQSAPGN*HDVDLKGPIVM
Trigger: CATCACTATGGGTCCTTTGAGATCCACATCATGGCAGTTTCCAGGTGCACTTTGGTCAGTCATGACTGGTGA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000221904.2
3UTR CCA 72 bp TTCCCAGCTATTGCTTCAACTGATCAACTGACCCATTaGAAGATAAGCACTCATGGTGGTGCACAGCTCAGG +
Preference number: 3 (lower is better)
Translates to: FPAIASTDQLTH*KISTHGGAQLR
Trigger: CCTGAGCTGTGCACCACCATGAGTGCTTATCTTCCAATGGGTCAGTTGATCAGTTGAAGCAATAGCTGGGAA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000221904.2
3UTR-3UTR CAA 90 bp GACCGTGCTATCAGCAGGCCAGGGGCTTCTCTTTTGTTTCTAGAGCTGGGCAGACTAACTTACTTTACTTaGTACTTCTGTGCTGGGATT +
Preference number: 3 (lower is better)
Translates to: DRAISRPGASLLFLELGRLTYFT*YFCAGI
Trigger: AATCCCAGCACAGAAGTACAAAGTAAAGTAAGTTAG...TCTGCCCAGCTCTAGAAACAAAAGAGAAGCCCCTGGCCTGCTGATAGCACGGTC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000221904.2
3UTR TCA 72 bp CAAGTTCTAGTCCTTTCCATCATCCTTGATGAAGCTTaGACAGAAACAAGAATGCCAAGCGGCAGGCCAGCA +
Preference number: 3 (lower is better)
Translates to: QVLVLSIILDEA*TETRMPSGRPA
Trigger: TGCTGGCCTGCCGCTTGGCATTCTTGTTTCTGTTCAAGCTTCATCAAGGATGATGGAAAGGACTAGAACTTG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000221904.2
3UTR TCA 72 bp AATAAGGTTTTCTGCCATCTGTTTGCATTTTTGATGTaGCAGGCCCAAAGCCACTGGGCCACACAACCTGAG +
Preference number: 3 (lower is better)
Translates to: NKVFCHLFAFLM*QAQSHWATQPE
Trigger: CTCAGGTTGTGTGGCCCAGTGGCTTTGGGCCTGTCACATCAAAAATGCAAACAGATGGCAGAAAACCTTATT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000221904.2
3UTR TCA 72 bp GAGGAACTGGCTTCTATTTTTACCTGTTTCCCAGCCTaGTGGCACAGTGGTTTCACAGGAAGCTTTATCCTG +
Preference number: 3 (lower is better)
Translates to: EELASIFTCFPA*WHSGFTGSFIL
Trigger: CAGGATAAAGCTTCCTGTGAAACCACTGTGCCATCAGGCTGGGAAACAGGTAAAAATAGAAGCCAGTTCCTC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000221904.2
3UTR GCA 72 bp ACAATACTTCAGACTGGCATGAAACTTTGGCGATCTTaGACTCAGGGTCCCAAGCACCGGGAATATATGCAT +
Preference number: 3 (lower is better)
Translates to: TILQTGMKLWRS*TQGPKHREYMH
Trigger: ATGCATATATTCCCGGTGCTTGGGACCCTGAGTGCAAGATCGCCAAAGTTTCATGCCAGTCTGAAGTATTGT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000221904.2
3UTR CCA 72 bp AGCAGGGAAGACGACTGTTCATCACAGCCATCTGCATaGTTTCATGCTGTGACTGACAACAGGAATTCTTAC +
Preference number: 3 (lower is better)
Translates to: SREDDCSSQPSA*FHAVTDNRNSY
Trigger: GTAAGAATTCCTGTTGTCAGTCACAGCATGAAACCATGCAGATGGCTGTGATGAACAGTCGTCTTCCCTGCT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000221904.2
3UTR-3UTR CAA 90 bp GAGGTGGTCCCTAACCTTAAACCTCCACCAGAGGCCTTAAGAACAACACCGGAACTAACTTACTTTACTTaGTACTTCTGTGCTGGGATT +
Preference number: 3 (lower is better)
Translates to: EVVPNLKPPPEALRTTPELTYFT*YFCAGI
Trigger: AATCCCAGCACAGAAGTACAAAGTAAAGTAAGTTAG...TTCCGGTGTTGTTCTTAAGGCCTCTGGTGGAGGTTTAAGGTTAGGGACCACCTC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000021929.10
ENSMUST00000221904.2
3UTR-3UTR CAA 90 bp ACATGGGGTCAGAAGCAGGTGGTCACCCAAAGCAACATCCTCATCAACTTTGATGTAAAAAGTCTGATGTaGGTCTCTGGAAACAGAACC +
Preference number: 3 (lower is better)
Translates to: TWGQKQVVTQSNILINFDVKSLM*VSGNRT
Trigger: GGTTCTGTTTCCAGAGACCAACATCAGACTTTTTAC...ATCAAAGTTGATGAGGATGTTGCTTTGGGTGACCACCTGCTTCTGACCCCATGT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000221904.2
3UTR TCA 72 bp TGCACGCACAGACCACGAGGTAGTTTAAATCACTACTaGAAACCAGTACACTTCCTCTGCTTCAGAGTGGTT +
Preference number: 3 (lower is better)
Translates to: CTHRPRGSLNHY*KPVHFLCFRVV
Trigger: AACCACTCTGAAGCAGAGGAAGTGTACTGGTTTTCAGTAGTGATTTAAACTACCTCGTGGTCTGTGCGTGCA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000021929.10
ENSMUST00000221904.2
3UTR TCA 72 bp ACTGTTCATCACAGCCATCTGCATGGTTTCATGCTGTaGCTGACAACAGGAATTCTTACATTCTACACCCGG +
Preference number: 3 (lower is better)
Translates to: TVHHSHLHGFML*LTTGILTFYTR
Trigger: CCGGGTGTAGAATGTAAGAATTCCTGTTGTCAGTCACAGCATGAAACCATGCAGATGGCTGTGATGAACAGT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000221904.2
3UTR TCA 72 bp ATCTCTGAGTTTATGAGTCCAGCTTGGTCTACAGAGTaGGTTCCAGGACAAGCAGGACTATACAGAGATACC +
Preference number: 3 (lower is better)
Translates to: ISEFMSPAWSTE*VPGQAGLYRDT
Trigger: GGTATCTCTGTATAGTCCTGCTTGTCCTGGAACTCACTCTGTAGACCAAGCTGGACTCATAAACTCAGAGAT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000221904.2
3UTR CCA 72 bp GGCACAGTGGTTTCACAGGAAGCTTTATCCTGTCTCTaGTGGAACATCCCAAAACGTGTTAGTAATGTGTCT +
Preference number: 3 (lower is better)
Translates to: GTVVSQEALSCL*WNIPKRVSNVS
Trigger: AGACACATTACTAACACGTTTTGGGATGTTCCACCAGAGACAGGATAAAGCTTCCTGTGAAACCACTGTGCC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000221904.2
3UTR CCA 72 bp TTCTATTTTTACCTGTTTCCCAGCCTGATGGCACAGTaGTTTCACAGGAAGCTTTATCCTGTCTCTGGTGGA +
Preference number: 3 (lower is better)
Translates to: FYFYLFPSLMAQ*FHRKLYPVSGG
Trigger: TCCACCAGAGACAGGATAAAGCTTCCTGTGAAACCACTGTGCCATCAGGCTGGGAAACAGGTAAAAATAGAA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000221904.2
3UTR-3UTR CAA 90 bp ACTACTGAAAACCAGTACACTTCCTCTGCTTCAGAGTGGTTGTCCCTAGTGCACTCCTTTCCATCATCCTaGATGAAGCTTGAACAGAAA +
Preference number: 3 (lower is better)
Translates to: TTENQYTSSASEWLSLVHSFPSS*MKLEQK
Trigger: TTTCTGTTCAAGCTTCATCAAGGATGATGGAAAGGA...GTGCACTAGGGACAACCACTCTGAAGCAGAGGAAGTGTACTGGTTTTCAGTAGT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000221904.2
3UTR TCA 72 bp GACACGGGAAAAGCAACATCTATTGTTCTTAGAGTCTaGCTCTTCTCGCGGCAAGGAAAGTCTCTTCATAGT +
Preference number: 3 (lower is better)
Translates to: DTGKATSIVLRV*LFSRQGKSLHS
Trigger: ACTATGAAGAGACTTTCCTTGCCGCGAGAAGAGTCAGACTCTAAGAACAATAGATGTTGCTTTTCCCGTGTC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000021929.10
ENSMUST00000221904.2
3UTR TCA 72 bp GTAATGTTCAAAACATCTCCTCTGTGCCTCTTTCACTaGGAGACCAGACTTTCAAGGCTTCCAGAGAATGTG +
Preference number: 3 (lower is better)
Translates to: VMFKTSPLCLFH*ETRLSRLPENV
Trigger: CACATTCTCTGGAAGCCTTGAAAGTCTGGTCTCTCAGTGAAAGAGGCACAGAGGAGATGTTTTGAACATTAC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000221904.2
3UTR TCA 72 bp GATCACAGAACTTATGTTCCCAGCTATTGCTTCAACTaGTCAACTGACCCATTGGAAGATAAGCACTCATGG +
Preference number: 3 (lower is better)
Translates to: DHRTYVPSYCFN*STDPLEDKHSW
Trigger: CCATGAGTGCTTATCTTCCAATGGGTCAGTTGATCAGTTGAAGCAATAGCTGGGAACATAAGTTCTGTGATC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000221904.2
3UTR TCA 72 bp TATTCCAATAGATCTCTGGAGCCAGGAAGATGGATCTaGTGTGGTTTGAGGAACTGGCTTCTATTTTTACCT +
Preference number: 3 (lower is better)
Translates to: YSNRSLEPGRWI*CGLRNWLLFLP
Trigger: AGGTAAAAATAGAAGCCAGTTCCTCAAACCACATCAGATCCATCTTCCTGGCTCCAGAGATCTATTGGAATA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000221904.2
3UTR CCA 72 bp ACTCATTCATTTAATAAACATGGGGTCAGAAGCAGGTaGTCACCCAAAGCAACATCCTCATCAACTTTGATG +
Preference number: 3 (lower is better)
Translates to: THSFNKHGVRSR*SPKATSSSTLM
Trigger: CATCAAAGTTGATGAGGATGTTGCTTTGGGTGACCACCTGCTTCTGACCCCATGTTTATTAAATGAATGAGT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000021929.10
ENSMUST00000221904.2
3UTR TCA 72 bp ACATCCCAAAACGTGTTAGTAATGTGTCTTAGACTTTaGACTGACCAAATAGAGGACAGTGAGTATGCTGTG +
Preference number: 3 (lower is better)
Translates to: TSQNVLVMCLRL*TDQIEDSEYAV
Trigger: CACAGCATACTCACTGTCCTCTATTTGGTCAGTTCAAAGTCTAAGACACATTACTAACACGTTTTGGGATGT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000221904.2
CDS-3UTR TCA 90 bp CAGCCGAGGGGAGGGCCCAGCCCATGTTCGCAGTCAGGAGATGTGACTGAGTTAGCCAGGCCTGTGTCCTaGGGCCACAGCCGGGCTCCT +
Preference number: 4 (lower is better)
Translates to: QPRGGPSPCSQSGDVTELARPVS*GHSRAP
Trigger: AGGAGCCCGGCTGTGGCCTCAGGACACAGGCCTGGC...TAACTCAGTCACATCTCCTGACTGCGAACATGGGCTGGGCCCTCCCCTCGGCTG
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000021929.10
ENSMUST00000221904.2
CDS-3UTR TCA 90 bp TACAATGAATCTTCCCTAGTTTTGCCGGTGGGTGGGTGGCCGGCCCTAGGTCTCGCCAGGCCTGTGTCCTaGGGCCACAGCCGGGCTCCT +
Preference number: 4 (lower is better)
Translates to: YNESSLVLPVGGWPALGLARPVS*GHSRAP
Trigger: AGGAGCCCGGCTGTGGCCTCAGGACACAGGCCTGGC...GAGACCTAGGGCCGGCCACCCACCCACCGGCAAAACTAGGGAAGATTCATTGTA
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000021929.10
ENSMUST00000221904.2
CDS-3UTR GCA 90 bp CAGCCGAGGGGAGGGCCCAGCCCATGTTCGCAGTCAGGAGATGTGACTGAGTTACTCTTGCGCTCCTTCTaGGACTCCCTGCGGCCGCCT +
Preference number: 4 (lower is better)
Translates to: QPRGGPSPCSQSGDVTELLLRSF*DSLRPP
Trigger: AGGCGGCCGCAGGGAGTCGCAGAAGGAGCGCAAGAG...TAACTCAGTCACATCTCCTGACTGCGAACATGGGCTGGGCCCTCCCCTCGGCTG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000021929.10
ENSMUST00000221904.2
CDS-3UTR GCA 90 bp GACCGTGCTATCAGCAGGCCAGGGGCTTCTCTTTTGTTTCTAGAGCTGGGCAGATTCTGGCCTGGCGGCTaGGGGCCCCCAGGGCTGTCT +
Preference number: 4 (lower is better)
Translates to: DRAISRPGASLLFLELGRFWPGG*GPPGLS
Trigger: AGACAGCCCTGGGGGCCCGCAGCCGCCAGGCCAGAA...TCTGCCCAGCTCTAGAAACAAAAGAGAAGCCCCTGGCCTGCTGATAGCACGGTC
62% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 1 transcripts:
ENSMUST00000221904.2
CDS-3UTR GCA 90 bp TACAATGAATCTTCCCTAGTTTTGCCGGTGGGTGGGTGGCCGGCCCTAGGTCTCACGCCGCGAGGCTCTTaGGCTCCTTCTGCGACTCCC +
Preference number: 4 (lower is better)
Translates to: YNESSLVLPVGGWPALGLTPRGS*APSATP
Trigger: GGGAGTCGCAGAAGGAGCGCAAGAGCCTCGCGGCGT...GAGACCTAGGGCCGGCCACCCACCCACCGGCAAAACTAGGGAAGATTCATTGTA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000021929.10
ENSMUST00000221904.2
CDS-3UTR GCA 90 bp CTGGTGGTCTGTGTGACCCTGTGGACTAGGAAGACCCTGGATGTGTCCCAGCCCATCCCCAGGGGCGAATaGCACAGCCACCCATGCTGT +
Preference number: 4 (lower is better)
Translates to: LVVCVTLWTRKTLDVSQPIPRGE*HSHPCC
Trigger: ACAGCATGGGTGGCTGTGGCATTCGCCCCTGGGGAT...GGGCTGGGACACATCCAGGGTCTTCCTAGTCCACAGGGTCACACAGACCACCAG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000221904.2
CDS-3UTR GCA 90 bp TCGCAGTCAGGAGATGTGACTGAGTTACAAGTCAGTCTGCTCAGAGTCCACAGTTTCTGGCCTGGCGGCTaGGGGCCCCCAGGGCTGTCT +
Preference number: 4 (lower is better)
Translates to: SQSGDVTELQVSLLRVHSFWPGG*GPPGLS
Trigger: AGACAGCCCTGGGGGCCCGCAGCCGCCAGGCCAGAA...ACTGTGGACTCTGAGCAGACTGACTTGTAACTCAGTCACATCTCCTGACTGCGA
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000021929.10
ENSMUST00000221904.2
CDS-3UTR GCA 90 bp GACTTGAGTTTATATGCCCAACACTCAATCAAAAAGCTGACTGTGGCAGGGCACCAGCCGAACGTCTCCTaGATCGCGGCGCCCGCGGCG +
Preference number: 4 (lower is better)
Translates to: DLSLYAQHSIKKLTVAGHQPNVS*IAAPAA
Trigger: CGCCGCGGGCGCCGCGATGCAGGAGACGTTCGGCTG...GTGCCCTGCCACAGTCAGCTTTTTGATTGAGTGTTGGGCATATAAACTCAAGTC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000221904.2
CDS-3UTR GCA 90 bp ATTATCCCTTACAAAAGTCTCTATCTGGGGAAAGGGCCTGACCTCATGGGAACTCCTTCTGCGACTCCCTaGGGCCGCCTGCGCCAGGCC +
Preference number: 4 (lower is better)
Translates to: IIPYKSLYLGKGPDLMGTPSATP*GRLRQA
Trigger: GGCCTGGCGCAGGCGGCCGCAGGGAGTCGCAGAAGG...AGTTCCCATGAGGTCAGGCCCTTTCCCCAGATAGAGACTTTTGTAAGGGATAAT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000021929.10
ENSMUST00000221904.2
CDS-3UTR CCA 90 bp GGTAGAAGTAAGTCCTGCTGGATGCGGTGGCTCGCGCCTTTAGTCCCAACATTTGCTGATGGAAGCGGTTaGCCACGACGCAGCCGAACG +
Preference number: 4 (lower is better)
Translates to: GRSKSCWMRWLAPLVPTFADGSG*PRRSRT
Trigger: CGTTCGGCTGCGTCGTGGCCAACCGCTTCCATCAGC...AAATGTTGGGACTAAAGGCGCGAGCCACCGCATCCAGCAGGACTTACTTCTACC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000221904.2
CDS-3UTR CCA 90 bp CAGCCGAGGGGAGGGCCCAGCCCATGTTCGCAGTCAGGAGATGTGACTGAGTTATTGGGAGCAACATCTTaGGTCACCACTTCTGCACGG +
Preference number: 4 (lower is better)
Translates to: QPRGGPSPCSQSGDVTELLGATS*VTTSAR
Trigger: CCGTGCAGAAGTGGTGACCCAAGATGTTGCTCCCAA...TAACTCAGTCACATCTCCTGACTGCGAACATGGGCTGGGCCCTCCCCTCGGCTG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000021929.10
3UTR CAA 72 bp GAAGTCCTCAGGGTCATCCGGGTTGGGAGCAACATCTaGGGTCACCACTTCTGCACGGGGGCCATAGTTCTC +
Preference number: 4 (lower is better)
Translates to: EVLRVIRVGSNI*GHHFCTGAIVL
Trigger: GAGAACTATGGCCCCCGTGCAGAAGTGGTGACCCAAGATGTTGCTCCCAACCCGGATGACCCTGAGGACTTC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000221904.2
CDS-3UTR GCA 90 bp ATTATCCCTTACAAAAGTCTCTATCTGGGGAAAGGGCCTGACCTCATGGGAACTGCTGTCTGGCTGCTGTaGGCCGGACGCCGCGAGGCT +
Preference number: 4 (lower is better)
Translates to: IIPYKSLYLGKGPDLMGTAVWLL*AGRREA
Trigger: AGCCTCGCGGCGTCCGGCGCACAGCAGCCAGACAGC...AGTTCCCATGAGGTCAGGCCCTTTCCCCAGATAGAGACTTTTGTAAGGGATAAT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000021929.10
ENSMUST00000221904.2
CDS-3UTR GCA 90 bp CGGGAAAAGCAACATCTATTGTTCTTAGAGTCTGACTCTTCTCGCGGCAAGGAAGCTGTCTGGCTGCTGTaGGCCGGACGCCGCGAGGCT +
Preference number: 4 (lower is better)
Translates to: REKQHLLFLESDSSRGKEAVWLL*AGRREA
Trigger: AGCCTCGCGGCGTCCGGCGCACAGCAGCCAGACAGC...TTCCTTGCCGCGAGAAGAGTCAGACTCTAAGAACAATAGATGTTGCTTTTCCCG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000021929.10
ENSMUST00000221904.2
CDS-3UTR GCA 90 bp ACATGGGGTCAGAAGCAGGTGGTCACCCAAAGCAACATCCTCATCAACTTTGATGACCGCCTCGGCCTCTaGTCCTCAGGCCTCCTCTGG +
Preference number: 4 (lower is better)
Translates to: TWGQKQVVTQSNILINFDDRLGL*SSGLLW
Trigger: CCAGAGGAGGCCTGAGGAGCAGAGGCCGAGGCGGTC...ATCAAAGTTGATGAGGATGTTGCTTTGGGTGACCACCTGCTTCTGACCCCATGT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000021929.10
ENSMUST00000221904.2
CDS-3UTR GCA 90 bp AAGCAACATCTATTGTTCTTAGAGTCTGACTCTTCTCGCGGCAAGGAAAGTCTCCTCGGCCTCCCCGGGTaGTGCCTCTGGCTCCCCGAC +
Preference number: 4 (lower is better)
Translates to: KQHLLFLESDSSRGKESLLGLPG*CLWLPD
Trigger: GTCGGGGAGCCAGAGGCAGCACCCGGGGAGGCCGAG...GAGACTTTCCTTGCCGCGAGAAGAGTCAGACTCTAAGAACAATAGATGTTGCTT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000021929.10
CDS-3UTR TCA 90 bp TCTGGCTCCCCGACCAGGGCGAGGGAGGTTACCAAAGTTAATCTCCAGCTGGGACTGGCTTCCGAATATTaGACTCAGGCTTTGGTCTGG +
Preference number: 4 (lower is better)
Translates to: SGSPTRAREVTKVNLQLGLASEY*TQALVW
Trigger: CCAGACCAAAGCCTGAGTTCAATATTCGGAAGCCAG...TCCCAGCTGGAGATTAACTTTGGTAACCTCCCTCGCCCTGGTCGGGGAGCCAGA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000221904.2
CDS-3UTR GCA 90 bp CTTCACACGACACGGGAAAAGCAACATCTATTGTTCTTAGAGTCTGACTCTTCTCAGCCGAACGTCTCCTaGATCGCGGCGCCCGCGGCG +
Preference number: 4 (lower is better)
Translates to: LHTTREKQHLLFLESDSSQPNVS*IAAPAA
Trigger: CGCCGCGGGCGCCGCGATGCAGGAGACGTTCGGCTG...AGAAGAGTCAGACTCTAAGAACAATAGATGTTGCTTTTCCCGTGTCGTGTGAAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000021929.10
ENSMUST00000221904.2
CDS-3UTR GCA 90 bp CTTAAACCTCCACCAGAGGCCTTAAGAACAACACCGGAACTGGGGCCCAGCCGAGTAGGACCTTCGCTCTaGTCTTTCAAGCACCACGTC +
Preference number: 4 (lower is better)
Translates to: LKPPPEALRTTPELGPSRVGPSL*SFKHHV
Trigger: GACGTGGTGCTTGAAAGAGCAGAGCGAAGGTCCTAC...TCGGCTGGGCCCCAGTTCCGGTGTTGTTCTTAAGGCCTCTGGTGGAGGTTTAAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000021929.10
ENSMUST00000221904.2
CDS-3UTR GCA 90 bp TTTCTCGTCTTGTTTTTCAAGACTCACTCTGTAGACCAGGCTGGCCTTGAACTCGACCGCCTCGGCCTCTaGTCCTCAGGCCTCCTCTGG +
Preference number: 4 (lower is better)
Translates to: FLVLFFKTHSVDQAGLELDRLGL*SSGLLW
Trigger: CCAGAGGAGGCCTGAGGAGCAGAGGCCGAGGCGGTC...GAGTTCAAGGCCAGCCTGGTCTACAGAGTGAGTCTTGAAAAACAAGACGAGAAA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000021929.10
ENSMUST00000221904.2
CDS-3UTR GCA 90 bp CTTCACACGACACGGGAAAAGCAACATCTATTGTTCTTAGAGTCTGACTCTTCTGGCCTCCCCGGGTGCTaGCTCTGGCTCCCCGACCAG +
Preference number: 4 (lower is better)
Translates to: LHTTREKQHLLFLESDSSGLPGC*LWLPDQ
Trigger: CTGGTCGGGGAGCCAGAGGCAGCACCCGGGGAGGCC...AGAAGAGTCAGACTCTAAGAACAATAGATGTTGCTTTTCCCGTGTCGTGTGAAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000021929.10
CDS-3UTR GCA 90 bp CTCAAGGACTTTTCTCGTCTTGTTTTTCAAGACTCACTCTGTAGACCAGGCTGGCCTCATCGCGACGCTTaGGCTGCAGCTGCTGCTGGC +
Preference number: 4 (lower is better)
Translates to: LKDFSRLVFQDSLCRPGWPHRDA*AAAAAG
Trigger: GCCAGCAGCAGCTGCAGCGCAAGCGTCGCGATGAGG...CCAGCCTGGTCTACAGAGTGAGTCTTGAAAAACAAGACGAGAAAAGTCCTTGAG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000021929.10
ENSMUST00000221904.2
CDS-3UTR GCA 90 bp TTTCTCGTCTTGTTTTTCAAGACTCACTCTGTAGACCAGGCTGGCCTTGAACTCCCTCATCGCGACGCTTaGGCTGCAGCTGCTGCTGGC +
Preference number: 4 (lower is better)
Translates to: FLVLFFKTHSVDQAGLELPHRDA*AAAAAG
Trigger: GCCAGCAGCAGCTGCAGCGCAAGCGTCGCGATGAGG...GAGTTCAAGGCCAGCCTGGTCTACAGAGTGAGTCTTGAAAAACAAGACGAGAAA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000021929.10
ENSMUST00000221904.2
CDS-3UTR GCA 90 bp GAGGTGGTCCCTAACCTTAAACCTCCACCAGAGGCCTTAAGAACAACACCGGAACTCAGGAACTTTGGCTaGAGACTCCTCGTCCAGGGC +
Preference number: 4 (lower is better)
Translates to: EVVPNLKPPPEALRTTPELRNFG*RLLVQG
Trigger: GCCCTGGACGAGGAGTCTGCAGCCAAAGTTCCTGAG...TTCCGGTGTTGTTCTTAAGGCCTCTGGTGGAGGTTTAAGGTTAGGGACCACCTC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000021929.10
ENSMUST00000221904.2
CDS-3UTR CCA 90 bp ACTACTGAAAACCAGTACACTTCCTCTGCTTCAGAGTGGTTGTCCCTAGTGCACTCGTCCAGGGCGCCCTaGCACTCCTCCATCATCGAG +
Preference number: 4 (lower is better)
Translates to: TTENQYTSSASEWLSLVHSSRAP*HSSIIE
Trigger: CTCGATGATGGAGGAGTGCCAGGGCGCCCTGGACGA...GTGCACTAGGGACAACCACTCTGAAGCAGAGGAAGTGTACTGGTTTTCAGTAGT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000021929.10
ENSMUST00000221904.2
3UTR CAA 72 bp TCTGACCGTGCTATCAGCAGGCCAGGGGCTTCTCTTTaGTTTCTAGAGCTGGGCAGAGGAAGCAGGGCTATT +
Preference number: 4 (lower is better)
Translates to: SDRAISRPGASL*FLELGRGSRAI
Trigger: AATAGCCCTGCTTCCTCTGCCCAGCTCTAGAAACAAAAGAGAAGCCCCTGGCCTGCTGATAGCACGGTCAGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000221904.2
CDS-3UTR TCA 90 bp CTCAAGGACTTTTCTCGTCTTGTTTTTCAAGACTCACTCTGTAGACCAGGCTGGTCGTCGTCCAGCAGCTaGTGGAAGCGGTTGGCCACG +
Preference number: 4 (lower is better)
Translates to: LKDFSRLVFQDSLCRPGWSSSSS*WKRLAT
Trigger: CGTGGCCAACCGCTTCCATCAGCTGCTGGACGACGA...CCAGCCTGGTCTACAGAGTGAGTCTTGAAAAACAAGACGAGAAAAGTCCTTGAG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000021929.10
ENSMUST00000221904.2
CDS-3UTR TCA 90 bp CGGGAAAAGCAACATCTATTGTTCTTAGAGTCTGACTCTTCTCGCGGCAAGGAATCGTCGTCCAGCAGCTaGTGGAAGCGGTTGGCCACG +
Preference number: 4 (lower is better)
Translates to: REKQHLLFLESDSSRGKESSSSS*WKRLAT
Trigger: CGTGGCCAACCGCTTCCATCAGCTGCTGGACGACGA...TTCCTTGCCGCGAGAAGAGTCAGACTCTAAGAACAATAGATGTTGCTTTTCCCG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000021929.10
ENSMUST00000221904.2
CDS-3UTR GCA 90 bp AGTCCTCAGGGTCATCCGGGTTGGGAGCAACATCTTGGGTCACCACTTCTGCACCTTGTGAATCACCACTaGCTTGGAAGGAACTGTGGA +
Preference number: 4 (lower is better)
Translates to: SPQGHPGWEQHLGSPLLHLVNHH*LGRNCG
Trigger: TCCACAGTTCCTTCCAAGGCAGTGGTGATTCACAAG...GTGCAGAAGTGGTGACCCAAGATGTTGCTCCCAACCCGGATGACCCTGAGGACT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000221904.2
CDS-3UTR CCA 90 bp TTTCTCGTCTTGTTTTTCAAGACTCACTCTGTAGACCAGGCTGGCCTTGAACTCGCTGATGGAAGCGGTTaGCCACGACGCAGCCGAACG +
Preference number: 4 (lower is better)
Translates to: FLVLFFKTHSVDQAGLELADGSG*PRRSRT
Trigger: CGTTCGGCTGCGTCGTGGCCAACCGCTTCCATCAGC...GAGTTCAAGGCCAGCCTGGTCTACAGAGTGAGTCTTGAAAAACAAGACGAGAAA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000021929.10
ENSMUST00000221904.2
CDS-3UTR GCA 90 bp CCTAGTGCACAATGTCTAAACCACAACTCAGGGATTTTCTCAGAATTGAGCAGTACGCCGCGAGGCTCTTaGGCTCCTTCTGCGACTCCC +
Preference number: 4 (lower is better)
Translates to: PSAQCLNHNSGIFSELSSTPRGS*APSATP
Trigger: GGGAGTCGCAGAAGGAGCGCAAGAGCCTCGCGGCGT...ACTGCTCAATTCTGAGAAAATCCCTGAGTTGTGGTTTAGACATTGTGCACTAGG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000021929.10
ENSMUST00000221904.2
CDS-3UTR GCA 90 bp CTTTCCGGAAGACGTGAGACTCATCCTCATAGTCCTCCTTCACCATCTGAAAGACTCAGGAACTTTGGCTaGAGACTCCTCGTCCAGGGC +
Preference number: 4 (lower is better)
Translates to: LSGRRETHPHSPPSPSERLRNFG*RLLVQG
Trigger: GCCCTGGACGAGGAGTCTGCAGCCAAAGTTCCTGAG...TCTTTCAGATGGTGAAGGAGGACTATGAGGATGAGTCTCACGTCTTCCGGAAAG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000221904.2
CDS-3UTR CCA 90 bp GAGGTGGTCCCTAACCTTAAACCTCCACCAGAGGCCTTAAGAACAACACCGGAATCGAGGTCTCTTCCATaGGTGCAGGTGGCTCTGTAT +
Preference number: 4 (lower is better)
Translates to: EVVPNLKPPPEALRTTPESRSLP*VQVALY
Trigger: ATACAGAGCCACCTGCACCCATGGAAGAGACCTCGA...TTCCGGTGTTGTTCTTAAGGCCTCTGGTGGAGGTTTAAGGTTAGGGACCACCTC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000021929.10
ENSMUST00000221904.2
CDS-3UTR CCA 90 bp AAGCAACATCTATTGTTCTTAGAGTCTGACTCTTCTCGCGGCAAGGAAAGTCTCTCGTCCAGGGCGCCCTaGCACTCCTCCATCATCGAG +
Preference number: 4 (lower is better)
Translates to: KQHLLFLESDSSRGKESLSSRAP*HSSIIE
Trigger: CTCGATGATGGAGGAGTGCCAGGGCGCCCTGGACGA...GAGACTTTCCTTGCCGCGAGAAGAGTCAGACTCTAAGAACAATAGATGTTGCTT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000021929.10
ENSMUST00000221904.2
CDS-3UTR CCA 90 bp AGTCCTCAGGGTCATCCGGGTTGGGAGCAACATCTTGGGTCACCACTTCTGCACCATCGTCTCTGTATCTaGACTTGTGAATCACCACTG +
Preference number: 4 (lower is better)
Translates to: SPQGHPGWEQHLGSPLLHHRLCI*TCESPL
Trigger: CAGTGGTGATTCACAAGTCCAGATACAGAGACGATG...GTGCAGAAGTGGTGACCCAAGATGTTGCTCCCAACCCGGATGACCCTGAGGACT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000221904.2
CDS-3UTR GCA 90 bp TCGCAGTCAGGAGATGTGACTGAGTTACAAGTCAGTCTGCTCAGAGTCCACAGTTCATTCCATCCTTGCTaGTCCCCTCTTCGAGGAGTC +
Preference number: 4 (lower is better)
Translates to: SQSGDVTELQVSLLRVHSSFHPC*SPLRGV
Trigger: GACTCCTCGAAGAGGGGAGCAGCAAGGATGGAATGA...ACTGTGGACTCTGAGCAGACTGACTTGTAACTCAGTCACATCTCCTGACTGCGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000021929.10
ENSMUST00000221904.2
CDS-3UTR GCA 90 bp AGGGAAGACGACTGTTCATCACAGCCATCTGCATGGTTTCATGCTGTGACTGACTCATTCCATCCTTGCTaGTCCCCTCTTCGAGGAGTC +
Preference number: 4 (lower is better)
Translates to: REDDCSSQPSAWFHAVTDSFHPC*SPLRGV
Trigger: GACTCCTCGAAGAGGGGAGCAGCAAGGATGGAATGA...GTCAGTCACAGCATGAAACCATGCAGATGGCTGTGATGAACAGTCGTCTTCCCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000221904.2
CDS-3UTR CCA 90 bp GAGGTGGTCCCTAACCTTAAACCTCCACCAGAGGCCTTAAGAACAACACCGGAATCCACGTCCTCTCAGTaGTCTGTCTCGATCAAACCT +
Preference number: 4 (lower is better)
Translates to: EVVPNLKPPPEALRTTPESTSSQ*SVSIKP
Trigger: AGGTTTGATCGAGACAGACCACTGAGAGGACGTGGA...TTCCGGTGTTGTTCTTAAGGCCTCTGGTGGAGGTTTAAGGTTAGGGACCACCTC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000021929.10
ENSMUST00000221904.2
CDS-3UTR CCA 90 bp TACAAAAGTCTCTATCTGGGGAAAGGGCCTGACCTCATGGGAACTCCACAGAGCGAATCACCACTGCCTTaGAAGGAACTGTGGACTCTG +
Preference number: 4 (lower is better)
Translates to: YKSLYLGKGPDLMGTPQSESPLP*KELWTL
Trigger: CAGAGTCCACAGTTCCTTCCAAGGCAGTGGTGATTC...GCTCTGTGGAGTTCCCATGAGGTCAGGCCCTTTCCCCAGATAGAGACTTTTGTA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000021929.10
ENSMUST00000221904.2
CDS-3UTR CCA 90 bp GAGGTGGTCCCTAACCTTAAACCTCCACCAGAGGCCTTAAGAACAACACCGGAAGAATCACCACTGCCTTaGAAGGAACTGTGGACTCTG +
Preference number: 4 (lower is better)
Translates to: EVVPNLKPPPEALRTTPEESPLP*KELWTL
Trigger: CAGAGTCCACAGTTCCTTCCAAGGCAGTGGTGATTC...TTCCGGTGTTGTTCTTAAGGCCTCTGGTGGAGGTTTAAGGTTAGGGACCACCTC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000021929.10
ENSMUST00000221904.2
3UTR CAA 72 bp TATAGCTGCAGCACCAGGGAGGCAAAGACAGTCTTCTaGGAGCTCACTAGCCAGTCTAGTTGCATTGGTGAG +
Preference number: 4 (lower is better)
Translates to: YSCSTREAKTVF*ELTSQSSCIGE
Trigger: CTCACCAATGCAACTAGACTGGCTAGTGAGCTCCAAGAAGACTGTCTTTGCCTCCCTGGTGCTGCAGCTATA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000221904.2
CDS-3UTR TCA 90 bp TCGCAGTCAGGAGATGTGACTGAGTTACAAGTCAGTCTGCTCAGAGTCCACAGTCTGGCTTCCGAATATTaGACTCAGGCTTTGGTCTGG +
Preference number: 4 (lower is better)
Translates to: SQSGDVTELQVSLLRVHSLASEY*TQALVW
Trigger: CCAGACCAAAGCCTGAGTTCAATATTCGGAAGCCAG...ACTGTGGACTCTGAGCAGACTGACTTGTAACTCAGTCACATCTCCTGACTGCGA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000021929.10
ENSMUST00000221904.2
CDS-3UTR GCA 90 bp ACTTCTGACTGCAAGTCAGGGAGTAATATCCAGCAGGGAAGACGACTGTTCATCGTAGGACCTTCGCTCTaGTCTTTCAAGCACCACGTC +
Preference number: 4 (lower is better)
Translates to: TSDCKSGSNIQQGRRLFIVGPSL*SFKHHV
Trigger: GACGTGGTGCTTGAAAGAGCAGAGCGAAGGTCCTAC...GATGAACAGTCGTCTTCCCTGCTGGATATTACTCCCTGACTTGCAGTCAGAAGT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000221904.2
CDS-3UTR GCA 90 bp AAACATGGGGTCAGAAGCAGGTGGTCACCCAAAGCAACATCCTCATCAACTTTGTGCCACAGCCACCCATaGTGTCCTCCATTCTGTTTG +
Preference number: 4 (lower is better)
Translates to: KHGVRSRWSPKATSSSTLCHSHP*CPPFCL
Trigger: CAAACAGAATGGAGGACAGCATGGGTGGCTGTGGCA...CAAAGTTGATGAGGATGTTGCTTTGGGTGACCACCTGCTTCTGACCCCATGTTT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000021929.10
ENSMUST00000221904.2
CDS-3UTR GCA 90 bp CTTCACACGACACGGGAAAAGCAACATCTATTGTTCTTAGAGTCTGACTCTTCTATCCCCAGGGGCGAATaGCACAGCCACCCATGCTGT +
Preference number: 4 (lower is better)
Translates to: LHTTREKQHLLFLESDSSIPRGE*HSHPCC
Trigger: ACAGCATGGGTGGCTGTGGCATTCGCCCCTGGGGAT...AGAAGAGTCAGACTCTAAGAACAATAGATGTTGCTTTTCCCGTGTCGTGTGAAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000021929.10
ENSMUST00000221904.2
CDS-3UTR CCA 90 bp TTTCTCGTCTTGTTTTTCAAGACTCACTCTGTAGACCAGGCTGGCCTTGAACTCCAGGGTCATCCGGGTTaGGAGCAACATCTTGGGTCA +
Preference number: 4 (lower is better)
Translates to: FLVLFFKTHSVDQAGLELQGHPG*EQHLGS
Trigger: TGACCCAAGATGTTGCTCCCAACCCGGATGACCCTG...GAGTTCAAGGCCAGCCTGGTCTACAGAGTGAGTCTTGAAAAACAAGACGAGAAA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000021929.10
CDS-3UTR TCA 90 bp CGGGAAAAGCAACATCTATTGTTCTTAGAGTCTGACTCTTCTCGCGGCAAGGAATCTCCAGCTGGGATGTaGTGTCATTGGCAGCTTTCC +
Preference number: 4 (lower is better)
Translates to: REKQHLLFLESDSSRGKESPAGM*CHWQLS
Trigger: GGAAAGCTGCCAATGACATCACATCCCAGCTGGAGA...TTCCTTGCCGCGAGAAGAGTCAGACTCTAAGAACAATAGATGTTGCTTTTCCCG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000021929.10
CDS-3UTR GCA 90 bp AAACATGGGGTCAGAAGCAGGTGGTCACCCAAAGCAACATCCTCATCAACTTTGTTGTCATTCCATCCTTaGTGCTCCCCTCTTCGAGGA +
Preference number: 4 (lower is better)
Translates to: KHGVRSRWSPKATSSSTLLSFHP*CSPLRG
Trigger: TCCTCGAAGAGGGGAGCAGCAAGGATGGAATGACAA...CAAAGTTGATGAGGATGTTGCTTTGGGTGACCACCTGCTTCTGACCCCATGTTT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000021929.10
ENSMUST00000221904.2
CDS-3UTR GCA 90 bp ACTTCTGACTGCAAGTCAGGGAGTAATATCCAGCAGGGAAGACGACTGTTCATCTTGTCATTCCATCCTTaGTGCTCCCCTCTTCGAGGA +
Preference number: 4 (lower is better)
Translates to: TSDCKSGSNIQQGRRLFILSFHP*CSPLRG
Trigger: TCCTCGAAGAGGGGAGCAGCAAGGATGGAATGACAA...GATGAACAGTCGTCTTCCCTGCTGGATATTACTCCCTGACTTGCAGTCAGAAGT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000221904.2
CDS-3UTR GCA 90 bp TTTCTCGTCTTGTTTTTCAAGACTCACTCTGTAGACCAGGCTGGCCTTGAACTCTGCCACAGCCACCCATaGTGTCCTCCATTCTGTTTG +
Preference number: 4 (lower is better)
Translates to: FLVLFFKTHSVDQAGLELCHSHP*CPPFCL
Trigger: CAAACAGAATGGAGGACAGCATGGGTGGCTGTGGCA...GAGTTCAAGGCCAGCCTGGTCTACAGAGTGAGTCTTGAAAAACAAGACGAGAAA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000021929.10
ENSMUST00000221904.2
CDS-3UTR CCA 90 bp CTCAAGGACTTTTCTCGTCTTGTTTTTCAAGACTCACTCTGTAGACCAGGCTGGTCGAGGTCTCTTCCATaGGTGCAGGTGGCTCTGTAT +
Preference number: 4 (lower is better)
Translates to: LKDFSRLVFQDSLCRPGWSRSLP*VQVALY
Trigger: ATACAGAGCCACCTGCACCCATGGAAGAGACCTCGA...CCAGCCTGGTCTACAGAGTGAGTCTTGAAAAACAAGACGAGAAAAGTCCTTGAG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000021929.10
ENSMUST00000221904.2
CDS-3UTR CCA 90 bp TCGCAGTCAGGAGATGTGACTGAGTTACAAGTCAGTCTGCTCAGAGTCCACAGTCCTTGGAAGGAACTGTaGACTCTGGCTTCCGAATAT +
Preference number: 4 (lower is better)
Translates to: SQSGDVTELQVSLLRVHSPWKEL*TLASEY
Trigger: ATATTCGGAAGCCAGAGTCCACAGTTCCTTCCAAGG...ACTGTGGACTCTGAGCAGACTGACTTGTAACTCAGTCACATCTCCTGACTGCGA
49% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000021929.10
ENSMUST00000221904.2
3UTR CAA 72 bp AGCAGGTGGTCACCCAAAGCAACATCCTCATCAACTTaGATGACTCAACCAAACCCCAAGAGTTCAGAGGGA +
Preference number: 4 (lower is better)
Translates to: SRWSPKATSSST*MTQPNPKSSEG
Trigger: TCCCTCTGAACTCTTGGGGTTTGGTTGAGTCATCAAAGTTGATGAGGATGTTGCTTTGGGTGACCACCTGCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000021929.10
ENSMUST00000221904.2
CDS-3UTR TCA 90 bp CTTCACACGACACGGGAAAAGCAACATCTATTGTTCTTAGAGTCTGACTCTTCTACTAGTGTCTTTACCTaGTCCCCAGGGGCGAATGCC +
Preference number: 4 (lower is better)
Translates to: LHTTREKQHLLFLESDSSTSVFT*SPGANA
Trigger: GGCATTCGCCCCTGGGGATCAGGTAAAGACACTAGT...AGAAGAGTCAGACTCTAAGAACAATAGATGTTGCTTTTCCCGTGTCGTGTGAAG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000021929.10
ENSMUST00000221904.2
CDS-3UTR CCA 90 bp GACTTGAGTTTATATGCCCAACACTCAATCAAAAAGCTGACTGTGGCAGGGCACGGTAAACTTCTCCACTaGCAAGTCAGCCTGTCTCTC +
Preference number: 4 (lower is better)
Translates to: DLSLYAQHSIKKLTVAGHGKLLH*QVSLSL
Trigger: GAGAGACAGGCTGACTTGCCAGTGGAGAAGTTTACC...GTGCCCTGCCACAGTCAGCTTTTTGATTGAGTGTTGGGCATATAAACTCAAGTC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000221904.2
CDS-3UTR CCA 90 bp TACAAAAGTCTCTATCTGGGGAAAGGGCCTGACCTCATGGGAACTCCACAGAGCTCTCGTTTCCCTCTTTaGTCAAAGGAGTCAAAAGCT +
Preference number: 4 (lower is better)
Translates to: YKSLYLGKGPDLMGTPQSSRFPL*SKESKA
Trigger: AGCTTTTGACTCCTTTGACCAAAGAGGGAAACGAGA...GCTCTGTGGAGTTCCCATGAGGTCAGGCCCTTTCCCCAGATAGAGACTTTTGTA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000021929.10
ENSMUST00000221904.2
CDS-3UTR CCA 90 bp GGTGGTGGGGAGAGGAGAACAAGAATGCCAAATAGCAAGGTCCTATTTCCACACTCTCGTTTCCCTCTTTaGTCAAAGGAGTCAAAAGCT +
Preference number: 4 (lower is better)
Translates to: GGGERRTRMPNSKVLFPHSRFPL*SKESKA
Trigger: AGCTTTTGACTCCTTTGACCAAAGAGGGAAACGAGA...GTGTGGAAATAGGACCTTGCTATTTGGCATTCTTGTTCTCCTCTCCCCACCACC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000221904.2
CDS-3UTR CCA 90 bp CCTAGTGCACAATGTCTAAACCACAACTCAGGGATTTTCTCAGAATTGAGCAGTGGTAAACTTCTCCACTaGCAAGTCAGCCTGTCTCTC +
Preference number: 4 (lower is better)
Translates to: PSAQCLNHNSGIFSELSSGKLLH*QVSLSL
Trigger: GAGAGACAGGCTGACTTGCCAGTGGAGAAGTTTACC...ACTGCTCAATTCTGAGAAAATCCCTGAGTTGTGGTTTAGACATTGTGCACTAGG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000021929.10
ENSMUST00000221904.2
CDS-3UTR CCA 90 bp AAGCAACATCTATTGTTCTTAGAGTCTGACTCTTCTCGCGGCAAGGAAAGTCTCCCTTGGAAGGAACTGTaGACTCTGGCTTCCGAATAT +
Preference number: 4 (lower is better)
Translates to: KQHLLFLESDSSRGKESLPWKEL*TLASEY
Trigger: ATATTCGGAAGCCAGAGTCCACAGTTCCTTCCAAGG...GAGACTTTCCTTGCCGCGAGAAGAGTCAGACTCTAAGAACAATAGATGTTGCTT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000021929.10
ENSMUST00000221904.2
3UTR CAA 72 bp ATATCTCGGTTCAGGCATCTGGTAAAAAGTCTGATGTaGGTCTCTGGAAACAGAACCACGTTGGTAACGTGC +
Preference number: 4 (lower is better)
Translates to: ISRFRHLVKSLM*VSGNRTTLVTC
Trigger: GCACGTTACCAACGTGGTTCTGTTTCCAGAGACCAACATCAGACTTTTTACCAGATGCCTGAACCGAGATAT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000221904.2
CDS-3UTR GCA 90 bp CTTCACACGACACGGGAAAAGCAACATCTATTGTTCTTAGAGTCTGACTCTTCTCTTGTGAATCACCACTaGCTTGGAAGGAACTGTGGA +
Preference number: 4 (lower is better)
Translates to: LHTTREKQHLLFLESDSSLVNHH*LGRNCG
Trigger: TCCACAGTTCCTTCCAAGGCAGTGGTGATTCACAAG...AGAAGAGTCAGACTCTAAGAACAATAGATGTTGCTTTTCCCGTGTCGTGTGAAG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000021929.10
ENSMUST00000221904.2
CDS-3UTR CCA 90 bp ATTATCCCTTACAAAAGTCTCTATCTGGGGAAAGGGCCTGACCTCATGGGAACTTCTAAGGTCATCTCTTaGACTTGGTTTTCCTCTTCT +
Preference number: 4 (lower is better)
Translates to: IIPYKSLYLGKGPDLMGTSKVIS*TWFSSS
Trigger: AGAAGAGGAAAACCAAGTCCAAGAGATGACCTTAGA...AGTTCCCATGAGGTCAGGCCCTTTCCCCAGATAGAGACTTTTGTAAGGGATAAT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000021929.10
ENSMUST00000221904.2
3UTR CAA 72 bp AACAGAACCACGTTGGTAACGTGCTTGCATAGGGACTaGAGTTTATATGCCCAACACTCAATCAAAAAGCTG +
Preference number: 4 (lower is better)
Translates to: NRTTLVTCLHRD*SLYAQHSIKKL
Trigger: CAGCTTTTTGATTGAGTGTTGGGCATATAAACTCAAGTCCCTATGCAAGCACGTTACCAACGTGGTTCTGTT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000221904.2
CDS-3UTR CCA 90 bp CTTCACACGACACGGGAAAAGCAACATCTATTGTTCTTAGAGTCTGACTCTTCTTATCGTCTCTGTATCTaGACTTGTGAATCACCACTG +
Preference number: 4 (lower is better)
Translates to: LHTTREKQHLLFLESDSSYRLCI*TCESPL
Trigger: CAGTGGTGATTCACAAGTCCAGATACAGAGACGATA...AGAAGAGTCAGACTCTAAGAACAATAGATGTTGCTTTTCCCGTGTCGTGTGAAG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000021929.10
CDS-3UTR CCA 90 bp CCTAGTGCACAATGTCTAAACCACAACTCAGGGATTTTCTCAGAATTGAGCAGTAAGTTAATCTCCAGCTaGGATGTGATGTCATTGGCA +
Preference number: 4 (lower is better)
Translates to: PSAQCLNHNSGIFSELSSKLISS*DVMSLA
Trigger: TGCCAATGACATCACATCCCAGCTGGAGATTAACTT...ACTGCTCAATTCTGAGAAAATCCCTGAGTTGTGGTTTAGACATTGTGCACTAGG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000021929.10
CDS-3UTR CCA 90 bp CCTAGTGCACAATGTCTAAACCACAACTCAGGGATTTTCTCAGAATTGAGCAGTTCTAAGGTCATCTCTTaGACTTGGTTTTCCTCTTCT +
Preference number: 4 (lower is better)
Translates to: PSAQCLNHNSGIFSELSSSKVIS*TWFSSS
Trigger: AGAAGAGGAAAACCAAGTCCAAGAGATGACCTTAGA...ACTGCTCAATTCTGAGAAAATCCCTGAGTTGTGGTTTAGACATTGTGCACTAGG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000021929.10
ENSMUST00000221904.2
3UTR CAA 72 bp GTGGGCACCAAGTCTCTATTCCTGACAACCACAGGTTaGACATGTACTCCTCAAATACAAAATAAATGTTTT +
Preference number: 4 (lower is better)
Translates to: VGTKSLFLTTTG*TCTPQIQNKCF
Trigger: AAAACATTTATTTTGTATTTGAGGAGTACATGTCAAACCTGTGGTTGTCAGGAATAGAGACTTGGTGCCCAC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000221904.2
CDS GCA 90 bp CCGCTGGCCGCCGCCGCCGCCTCATCGCGACGCTTGCGCTGCAGCTaGTGCTGGCGCCGGTGCTCGGCCTCCCGCAGGATGTCGAACGGG +
Preference number: 5 (lower is better)
Translates to: PLAAAAASSRRLRCS*CWRRCSASRRMSNG
Trigger: CCCGTTCGACATCCTGCGGGAGGCCGAGCACCGGCGCCAGCAGCAGCTGCAGCGCAAGCGTCGCGATGAGGCGGCGGCGGCGGCCAGCGG
77% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000021929.10
ENSMUST00000221904.2
CDS GCA 90 bp CCCCAGGGCTGTCTGGCTGCTGTGCGCCGGACGCCGCGAGGCTCTTaGGCTCCTTCTGCGACTCCCTGCGGCCGCCTGCGCCAGGCCTGT +
Preference number: 5 (lower is better)
Translates to: PQGCLAAVRRTPRGS*APSATPCGRLRQAC
Trigger: ACAGGCCTGGCGCAGGCGGCCGCAGGGAGTCGCAGAAGGAGCGCAAGAGCCTCGCGGCGTCCGGCGCACAGCAGCCAGACAGCCCTGGGG
74% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000021929.10
ENSMUST00000221904.2
CDS GCA 90 bp TCTGGCTGCTGTGCGCCGGACGCCGCGAGGCTCTTGCGCTCCTTCTaGGACTCCCTGCGGCCGCCTGCGCCAGGCCTGTGTCCTGAGGCC +
Preference number: 5 (lower is better)
Translates to: SGCCAPDAARLLRSF*DSLRPPAPGLCPEA
Trigger: GGCCTCAGGACACAGGCCTGGCGCAGGCGGCCGCAGGGAGTCGCAGAAGGAGCGCAAGAGCCTCGCGGCGTCCGGCGCACAGCAGCCAGA
73% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000021929.10
ENSMUST00000221904.2
CDS-3UTR CAA 90 bp TACAATGAATCTTCCCTAGTTTTGCCGGTGGGTGGGTGGCCGGCCCTAGGTCTCGACGCCGCGAGGCTCTaGCGCTCCTTCTGCGACTCC +
Preference number: 5 (lower is better)
Translates to: YNESSLVLPVGGWPALGLDAARL*RSFCDS
Trigger: GGAGTCGCAGAAGGAGCGCAAGAGCCTCGCGGCGTC...GAGACCTAGGGCCGGCCACCCACCCACCGGCAAAACTAGGGAAGATTCATTGTA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000021929.10
ENSMUST00000221904.2
CDS GCA 90 bp GCTCTTTCAAGCACCACGTCTGTCCCCCTGTTGTCATTCCATCCTTaGTGCTCCCCTCTTCGAGGAGTCCGCTTCTGGCCTGGCGGCTGC +
Preference number: 5 (lower is better)
Translates to: ALSSTTSVPLLSFHP*CSPLRGVRFWPGGC
Trigger: GCAGCCGCCAGGCCAGAAGCGGACTCCTCGAAGAGGGGAGCAGCAAGGATGGAATGACAACAGGGGGACAGACGTGGTGCTTGAAAGAGC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000021929.10
ENSMUST00000221904.2
CDS CCA 90 bp TCCAACTCAGGAACTTTGGCTGCAGACTCCTCGTCCAGGGCGCCCTaGCACTCCTCCATCATCGAGGTCTCTTCCATGGGTGCAGGTGGC +
Preference number: 5 (lower is better)
Translates to: SNSGTLAADSSSRAP*HSSIIEVSSMGAGG
Trigger: GCCACCTGCACCCATGGAAGAGACCTCGATGATGGAGGAGTGCCAGGGCGCCCTGGACGAGGAGTCTGCAGCCAAAGTTCCTGAGTTGGA
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000021929.10
ENSMUST00000221904.2
CDS-3UTR CAA 90 bp CAGCCGAGGGGAGGGCCCAGCCCATGTTCGCAGTCAGGAGATGTGACTGAGTTATCAGGGTCATCCGGGTaGGGAGCAACATCTTGGGTC +
Preference number: 5 (lower is better)
Translates to: QPRGGPSPCSQSGDVTELSGSSG*GATSWV
Trigger: GACCCAAGATGTTGCTCCCAACCCGGATGACCCTGA...TAACTCAGTCACATCTCCTGACTGCGAACATGGGCTGGGCCCTCCCCTCGGCTG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000021929.10
CDS TCA 90 bp CTCTTCCATGGGTGCAGGTGGCTCTGTATCACTAGTGTCTTTACCTaGTCCCCAGGGGCGAATGCCACAGCCACCCATGCTGTCCTCCAT +
Preference number: 5 (lower is better)
Translates to: LFHGCRWLCITSVFT*SPGANATATHAVLH
Trigger: ATGGAGGACAGCATGGGTGGCTGTGGCATTCGCCCCTGGGGATCAGGTAAAGACACTAGTGATACAGAGCCACCTGCACCCATGGAAGAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000021929.10
ENSMUST00000221904.2
CDS-3UTR CAA 90 bp AAACATGGGGTCAGAAGCAGGTGGTCACCCAAAGCAACATCCTCATCAACTTTGGACGCCGCGAGGCTCTaGCGCTCCTTCTGCGACTCC +
Preference number: 5 (lower is better)
Translates to: KHGVRSRWSPKATSSSTLDAARL*RSFCDS
Trigger: GGAGTCGCAGAAGGAGCGCAAGAGCCTCGCGGCGTC...CAAAGTTGATGAGGATGTTGCTTTGGGTGACCACCTGCTTCTGACCCCATGTTT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000021929.10
ENSMUST00000221904.2
CDS GCA 90 bp TTGGACTTGGTTTTCCTCTTCTACCTCCAACTCAGGAACTTTGGCTaGAGACTCCTCGTCCAGGGCGCCCTGGCACTCCTCCATCATCGA +
Preference number: 5 (lower is better)
Translates to: LDLVFLFYLQLRNFG*RLLVQGALALLHHR
Trigger: TCGATGATGGAGGAGTGCCAGGGCGCCCTGGACGAGGAGTCTGCAGCCAAAGTTCCTGAGTTGGAGGTAGAAGAGGAAAACCAAGTCCAA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000021929.10
ENSMUST00000221904.2
CDS CCA 90 bp TCTCTTGGACTTGGTTTTCCTCTTCTACCTCCAACTCAGGAACTTTaGCTGCAGACTCCTCGTCCAGGGCGCCCTGGCACTCCTCCATCA +
Preference number: 5 (lower is better)
Translates to: SLGLGFPLLPPTQEL*LQTPRPGRPGTPPS
Trigger: TGATGGAGGAGTGCCAGGGCGCCCTGGACGAGGAGTCTGCAGCCAAAGTTCCTGAGTTGGAGGTAGAAGAGGAAAACCAAGTCCAAGAGA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000021929.10
ENSMUST00000221904.2
CDS GCA 90 bp TCTCTCAGTCTCATAGGGCCGGTATTCCCTGTAGGACCTTCGCTCTaGTCTTTCAAGCACCACGTCTGTCCCCCTGTTGTCATTCCATCC +
Preference number: 5 (lower is better)
Translates to: SLSLIGPVFPVGPSL*SFKHHVCPPVVIPS
Trigger: GGATGGAATGACAACAGGGGGACAGACGTGGTGCTTGAAAGAGCAGAGCGAAGGTCCTACAGGGAATACCGGCCCTATGAGACTGAGAGA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000021929.10
ENSMUST00000221904.2
CDS-3UTR CAA 90 bp CTGGTGGTCTGTGTGACCCTGTGGACTAGGAAGACCCTGGATGTGTCCCAGCCCAGGCTTTGGTCTGGTTaGTTCTTGAAGGTTTTTCCA +
Preference number: 5 (lower is better)
Translates to: LVVCVTLWTRKTLDVSQPRLWSG*FLKVFP
Trigger: TGGAAAAACCTTCAAGAACAAACCAGACCAAAGCCT...GGGCTGGGACACATCCAGGGTCTTCCTAGTCCACAGGGTCACACAGACCACCAG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000221904.2
CDS CCA 90 bp GCCTCCACGTCCTCTCAGTGGTCTGTCTCGATCAAACCTGTCAACTaGTTTTTCATCGGTAAACTTCTCCACTGGCAAGTCAGCCTGTCT +
Preference number: 5 (lower is better)
Translates to: ASTSSQWSVSIKPVN*FFIGKLLHWQVSLS
Trigger: AGACAGGCTGACTTGCCAGTGGAGAAGTTTACCGATGAAAAACCAGTTGACAGGTTTGATCGAGACAGACCACTGAGAGGACGTGGAGGC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000021929.10
ENSMUST00000221904.2
CDS-3UTR CAA 90 bp ACTACTGAAAACCAGTACACTTCCTCTGCTTCAGAGTGGTTGTCCCTAGTGCACGTTGTCATTCCATCCTaGCTGCTCCCCTCTTCGAGG +
Preference number: 5 (lower is better)
Translates to: TTENQYTSSASEWLSLVHVVIPS*LLPSSR
Trigger: CCTCGAAGAGGGGAGCAGCAAGGATGGAATGACAAC...GTGCACTAGGGACAACCACTCTGAAGCAGAGGAAGTGTACTGGTTTTCAGTAGT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000021929.10
ENSMUST00000221904.2
CDS-3UTR CAA 90 bp ACATGGGGTCAGAAGCAGGTGGTCACCCAAAGCAACATCCTCATCAACTTTGATGTTGGGAGCAACATCTaGGGTCACCACTTCTGCACG +
Preference number: 5 (lower is better)
Translates to: TWGQKQVVTQSNILINFDVGSNI*GHHFCT
Trigger: CGTGCAGAAGTGGTGACCCAAGATGTTGCTCCCAAC...ATCAAAGTTGATGAGGATGTTGCTTTGGGTGACCACCTGCTTCTGACCCCATGT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000021929.10
CDS-3UTR CAA 90 bp TTTCTCGTCTTGTTTTTCAAGACTCACTCTGTAGACCAGGCTGGCCTTGAACTCACGTCTGTCCCCCTGTaGTCATTCCATCCTTGCTGC +
Preference number: 5 (lower is better)
Translates to: FLVLFFKTHSVDQAGLELTSVPL*SFHPCC
Trigger: GCAGCAAGGATGGAATGACAACAGGGGGACAGACGT...GAGTTCAAGGCCAGCCTGGTCTACAGAGTGAGTCTTGAAAAACAAGACGAGAAA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000021929.10
ENSMUST00000221904.2
CDS-3UTR CAA 90 bp ACATGGGGTCAGAAGCAGGTGGTCACCCAAAGCAACATCCTCATCAACTTTGATTGGGATGTGATGTCATaGGCAGCTTTCCGGAAGACG +
Preference number: 5 (lower is better)
Translates to: TWGQKQVVTQSNILINFDWDVMS*AAFRKT
Trigger: CGTCTTCCGGAAAGCTGCCAATGACATCACATCCCA...ATCAAAGTTGATGAGGATGTTGCTTTGGGTGACCACCTGCTTCTGACCCCATGT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000021929.10
CDS CCA 90 bp TCGATCAAACCTGTCAACTGGTTTTTCATCGGTAAACTTCTCCACTaGCAAGTCAGCCTGTCTCTCAGTCTCATAGGGCCGGTATTCCCT +
Preference number: 5 (lower is better)
Translates to: SIKPVNWFFIGKLLH*QVSLSLSLIGPVFP
Trigger: AGGGAATACCGGCCCTATGAGACTGAGAGACAGGCTGACTTGCCAGTGGAGAAGTTTACCGATGAAAAACCAGTTGACAGGTTTGATCGA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000021929.10
ENSMUST00000221904.2
CDS-3UTR CAA 90 bp TCGCAGTCAGGAGATGTGACTGAGTTACAAGTCAGTCTGCTCAGAGTCCACAGTGGTCATCTCTTGGACTaGGTTTTCCTCTTCTACCTC +
Preference number: 5 (lower is better)
Translates to: SQSGDVTELQVSLLRVHSGHLLD*VFLFYL
Trigger: GAGGTAGAAGAGGAAAACCAAGTCCAAGAGATGACC...ACTGTGGACTCTGAGCAGACTGACTTGTAACTCAGTCACATCTCCTGACTGCGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000021929.10
ENSMUST00000221904.2
CDS GCA 90 bp CTCCTTCACCATATCGTCTCTGTATCTGGACTTGTGAATCACCACTaGCTTGGAAGGAACTGTGGACTCTGGCTTCCGAATATTGAACTC +
Preference number: 5 (lower is better)
Translates to: LLHHIVSVSGLVNHH*LGRNCGLWLPNIEL
Trigger: GAGTTCAATATTCGGAAGCCAGAGTCCACAGTTCCTTCCAAGGCAGTGGTGATTCACAAGTCCAGATACAGAGACGATATGGTGAAGGAG
48% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000021929.10
CDS-3UTR CAA 90 bp CTTCACACGACACGGGAAAAGCAACATCTATTGTTCTTAGAGTCTGACTCTTCTGTTGTCATTCCATCCTaGCTGCTCCCCTCTTCGAGG +
Preference number: 5 (lower is better)
Translates to: LHTTREKQHLLFLESDSSVVIPS*LLPSSR
Trigger: CCTCGAAGAGGGGAGCAGCAAGGATGGAATGACAAC...AGAAGAGTCAGACTCTAAGAACAATAGATGTTGCTTTTCCCGTGTCGTGTGAAG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000021929.10
ENSMUST00000221904.2
CDS-3UTR CAA 90 bp AAACATGGGGTCAGAAGCAGGTGGTCACCCAAAGCAACATCCTCATCAACTTTGGTCTCGTTTCCCTCTTaGGTCAAAGGAGTCAAAAGC +
Preference number: 5 (lower is better)
Translates to: KHGVRSRWSPKATSSSTLVSFPS*VKGVKS
Trigger: GCTTTTGACTCCTTTGACCAAAGAGGGAAACGAGAC...CAAAGTTGATGAGGATGTTGCTTTGGGTGACCACCTGCTTCTGACCCCATGTTT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000021929.10
ENSMUST00000221904.2
CDS-3UTR CAA 90 bp CTTTCCGGAAGACGTGAGACTCATCCTCATAGTCCTCCTTCACCATCTGAAAGAGTCTCGTTTCCCTCTTaGGTCAAAGGAGTCAAAAGC +
Preference number: 5 (lower is better)
Translates to: LSGRRETHPHSPPSPSERVSFPS*VKGVKS
Trigger: GCTTTTGACTCCTTTGACCAAAGAGGGAAACGAGAC...TCTTTCAGATGGTGAAGGAGGACTATGAGGATGAGTCTCACGTCTTCCGGAAAG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000221904.2
CDS GCA 90 bp AGACAAGCTTACATCGTCTCTGTATCTGGACTTGTGAATCACCACTaGCTTGGAAGGAACTGTGGACTCTGGCTTCCGAATATTGAACTC +
Preference number: 5 (lower is better)
Translates to: RQAYIVSVSGLVNHH*LGRNCGLWLPNIEL
Trigger: GAGTTCAATATTCGGAAGCCAGAGTCCACAGTTCCTTCCAAGGCAGTGGTGATTCACAAGTCCAGATACAGAGACGATGTAAGCTTGTCT
47% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000221904.2
CDS-3UTR CAA 90 bp CTCAAGGACTTTTCTCGTCTTGTTTTTCAAGACTCACTCTGTAGACCAGGCTGGTCTGGCTTCCGAATATaGAACTCAGGCTTTGGTCTG +
Preference number: 5 (lower is better)
Translates to: LKDFSRLVFQDSLCRPGWSGFRI*NSGFGL
Trigger: CAGACCAAAGCCTGAGTTCAATATTCGGAAGCCAGA...CCAGCCTGGTCTACAGAGTGAGTCTTGAAAAACAAGACGAGAAAAGTCCTTGAG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000021929.10
ENSMUST00000221904.2
CDS GCA 90 bp TGCCACAGCCACCCATGCTGTCCTCCATTCTGTTTGTTTTATCATTaGTACTGTATCTCTCAAAGTCTCGTTTCCCTCTTTGGTCAAAGG +
Preference number: 5 (lower is better)
Translates to: CHSHPCCPPFCLFYH*YCISQSLVSLFGQR
Trigger: CCTTTGACCAAAGAGGGAAACGAGACTTTGAGAGATACAGTAGCAATGATAAAACAAACAGAATGGAGGACAGCATGGGTGGCTGTGGCA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000021929.10
ENSMUST00000221904.2
CDS-3UTR CAA 90 bp ACACCCGGGTGCTTCAGAGTTCCTTTAACTTCAGCAACAAACAAACAAATGCAAGGTCATCTCTTGGACTaGGTTTTCCTCTTCTACCTC +
Preference number: 5 (lower is better)
Translates to: TPGCFRVPLTSATNKQMQGHLLD*VFLFYL
Trigger: GAGGTAGAAGAGGAAAACCAAGTCCAAGAGATGACC...TTGCATTTGTTTGTTTGTTGCTGAAGTTAAAGGAACTCTGAAGCACCCGGGTGT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000221904.2
CDS-3UTR CAA 90 bp ATTATCCCTTACAAAAGTCTCTATCTGGGGAAAGGGCCTGACCTCATGGGAACTAGGCTTTGGTCTGGTTaGTTCTTGAAGGTTTTTCCA +
Preference number: 5 (lower is better)
Translates to: IIPYKSLYLGKGPDLMGTRLWSG*FLKVFP
Trigger: TGGAAAAACCTTCAAGAACAAACCAGACCAAAGCCT...AGTTCCCATGAGGTCAGGCCCTTTCCCCAGATAGAGACTTTTGTAAGGGATAAT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000021929.10
ENSMUST00000221904.2
CDS-3UTR CAA 90 bp AAGCTCGGTGACTCAGCTAACTTGGTTACCTCAAATATTCCAATAGATCTCTGGTCTGGCTTCCGAATATaGAACTCAGGCTTTGGTCTG +
Preference number: 5 (lower is better)
Translates to: KLGDSANLVTSNIPIDLWSGFRI*NSGFGL
Trigger: CAGACCAAAGCCTGAGTTCAATATTCGGAAGCCAGA...CCAGAGATCTATTGGAATATTTGAGGTAACCAAGTTAGCTGAGTCACCGAGCTT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000221904.2
CDS-3UTR CAA 90 bp ACTACTGAAAACCAGTACACTTCCTCTGCTTCAGAGTGGTTGTCCCTAGTGCACTGTCCTCCATTCTGTTaGTTTTATCATTGCTACTGT +
Preference number: 5 (lower is better)
Translates to: TTENQYTSSASEWLSLVHCPPFC*FYHCYC
Trigger: ACAGTAGCAATGATAAAACAAACAGAATGGAGGACA...GTGCACTAGGGACAACCACTCTGAAGCAGAGGAAGTGTACTGGTTTTCAGTAGT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000021929.10
ENSMUST00000221904.2
CDS-3UTR CAA 90 bp CTTTCCGGAAGACGTGAGACTCATCCTCATAGTCCTCCTTCACCATCTGAAAGATGTCCTCCATTCTGTTaGTTTTATCATTGCTACTGT +
Preference number: 5 (lower is better)
Translates to: LSGRRETHPHSPPSPSERCPPFC*FYHCYC
Trigger: ACAGTAGCAATGATAAAACAAACAGAATGGAGGACA...TCTTTCAGATGGTGAAGGAGGACTATGAGGATGAGTCTCACGTCTTCCGGAAAG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000221904.2
CDS GCA 72 bp CTGGCCGCCGCCGCCGCCTCATCGCGACGCTTGCGCTaGAGCTGCTGCTGGCGCCGGTGCTCGGCCTCCCGC +
Preference number: 6 (lower is better)
Translates to: LAAAAASSRRLR*SCCWRRCSASR
Trigger: GCGGGAGGCCGAGCACCGGCGCCAGCAGCAGCTGCAGCGCAAGCGTCGCGATGAGGCGGCGGCGGCGGCCAG
79% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000021929.10
ENSMUST00000221904.2
CDS CAA 90 bp CCCCCAGGGCTGTCTGGCTGCTGTGCGCCGGACGCCGCGAGGCTCTaGCGCTCCTTCTGCGACTCCCTGCGGCCGCCTGCGCCAGGCCTG +
Preference number: 6 (lower is better)
Translates to: PPGLSGCCAPDAARL*RSFCDSLRPPAPGL
Trigger: CAGGCCTGGCGCAGGCGGCCGCAGGGAGTCGCAGAAGGAGCGCAAGAGCCTCGCGGCGTCCGGCGCACAGCAGCCAGACAGCCCTGGGGG
76% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000021929.10
ENSMUST00000221904.2
CDS GCA 72 bp TGGAAGCGGTTGGCCACGACGCAGCCGAACGTCTCCTaGATCGCGGCGCCCGCGGCGGCTACAGGGCTCCCC +
Preference number: 6 (lower is better)
Translates to: WKRLATTQPNVS*IAAPAAATGLP
Trigger: GGGGAGCCCTGTAGCCGCCGCGGGCGCCGCGATGCAGGAGACGTTCGGCTGCGTCGTGGCCAACCGCTTCCA
74% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000021929.10
ENSMUST00000221904.2
CDS GCA 72 bp TGTGCGCCGGACGCCGCGAGGCTCTTGCGCTCCTTCTaGGACTCCCTGCGGCCGCCTGCGCCAGGCCTGTGT +
Preference number: 6 (lower is better)
Translates to: CAPDAARLLRSF*DSLRPPAPGLC
Trigger: ACACAGGCCTGGCGCAGGCGGCCGCAGGGAGTCGCAGAAGGAGCGCAAGAGCCTCGCGGCGTCCGGCGCACA
74% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000021929.10
ENSMUST00000221904.2
CDS GCA 72 bp TGTCTGGCTGCTGTGCGCCGGACGCCGCGAGGCTCTTaGGCTCCTTCTGCGACTCCCTGCGGCCGCCTGCGC +
Preference number: 6 (lower is better)
Translates to: CLAAVRRTPRGS*APSATPCGRLR
Trigger: GCGCAGGCGGCCGCAGGGAGTCGCAGAAGGAGCGCAAGAGCCTCGCGGCGTCCGGCGCACAGCAGCCAGACA
74% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000021929.10
ENSMUST00000221904.2
CDS CAA 72 bp CTGTCTGGCTGCTGTGCGCCGGACGCCGCGAGGCTCTaGCGCTCCTTCTGCGACTCCCTGCGGCCGCCTGCG +
Preference number: 6 (lower is better)
Translates to: LSGCCAPDAARL*RSFCDSLRPPA
Trigger: CGCAGGCGGCCGCAGGGAGTCGCAGAAGGAGCGCAAGAGCCTCGCGGCGTCCGGCGCACAGCAGCCAGACAG
74% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000021929.10
ENSMUST00000221904.2
CDS CCA 72 bp GCCGCCTCATCGCGACGCTTGCGCTGCAGCTGCTGCTaGCGCCGGTGCTCGGCCTCCCGCAGGATGTCGAAC +
Preference number: 6 (lower is better)
Translates to: AASSRRLRCSCC*RRCSASRRMSN
Trigger: GTTCGACATCCTGCGGGAGGCCGAGCACCGGCGCCAGCAGCAGCTGCAGCGCAAGCGTCGCGATGAGGCGGC
72% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000021929.10
ENSMUST00000221904.2
CDS CCA 72 bp GGAACTTTGGCTGCAGACTCCTCGTCCAGGGCGCCCTaGCACTCCTCCATCATCGAGGTCTCTTCCATGGGT +
Preference number: 6 (lower is better)
Translates to: GTLAADSSSRAP*HSSIIEVSSMG
Trigger: ACCCATGGAAGAGACCTCGATGATGGAGGAGTGCCAGGGCGCCCTGGACGAGGAGTCTGCAGCCAAAGTTCC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000021929.10
ENSMUST00000221904.2
CDS GCA 72 bp AGCACCACGTCTGTCCCCCTGTTGTCATTCCATCCTTaGTGCTCCCCTCTTCGAGGAGTCCGCTTCTGGCCT +
Preference number: 6 (lower is better)
Translates to: STTSVPLLSFHP*CSPLRGVRFWP
Trigger: AGGCCAGAAGCGGACTCCTCGAAGAGGGGAGCAGCAAGGATGGAATGACAACAGGGGGACAGACGTGGTGCT
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000021929.10
ENSMUST00000221904.2
CDS TCA 72 bp GGGTGCAGGTGGCTCTGTATCACTAGTGTCTTTACCTaGTCCCCAGGGGCGAATGCCACAGCCACCCATGCT +
Preference number: 6 (lower is better)
Translates to: GCRWLCITSVFT*SPGANATATHA
Trigger: AGCATGGGTGGCTGTGGCATTCGCCCCTGGGGATCAGGTAAAGACACTAGTGATACAGAGCCACCTGCACCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000021929.10
ENSMUST00000221904.2
CDS GCA 72 bp GTTTTCCTCTTCTACCTCCAACTCAGGAACTTTGGCTaGAGACTCCTCGTCCAGGGCGCCCTGGCACTCCTC +
Preference number: 6 (lower is better)
Translates to: VFLFYLQLRNFG*RLLVQGALALL
Trigger: GAGGAGTGCCAGGGCGCCCTGGACGAGGAGTCTGCAGCCAAAGTTCCTGAGTTGGAGGTAGAAGAGGAAAAC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000021929.10
ENSMUST00000221904.2
CDS GCA 72 bp CTCATAGGGCCGGTATTCCCTGTAGGACCTTCGCTCTaGTCTTTCAAGCACCACGTCTGTCCCCCTGTTGTC +
Preference number: 6 (lower is better)
Translates to: LIGPVFPVGPSL*SFKHHVCPPVV
Trigger: GACAACAGGGGGACAGACGTGGTGCTTGAAAGAGCAGAGCGAAGGTCCTACAGGGAATACCGGCCCTATGAG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000021929.10
ENSMUST00000221904.2
CDS CCA 72 bp CTTGGTTTTCCTCTTCTACCTCCAACTCAGGAACTTTaGCTGCAGACTCCTCGTCCAGGGCGCCCTGGCACT +
Preference number: 6 (lower is better)
Translates to: LGFPLLPPTQEL*LQTPRPGRPGT
Trigger: AGTGCCAGGGCGCCCTGGACGAGGAGTCTGCAGCCAAAGTTCCTGAGTTGGAGGTAGAAGAGGAAAACCAAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000021929.10
ENSMUST00000221904.2
CDS CAA 72 bp ACTTGGTTTTCCTCTTCTACCTCCAACTCAGGAACTTaGGCTGCAGACTCCTCGTCCAGGGCGCCCTGGCAC +
Preference number: 6 (lower is better)
Translates to: TWFSSSTSNSGT*AADSSSRAPWH
Trigger: GTGCCAGGGCGCCCTGGACGAGGAGTCTGCAGCCAAAGTTCCTGAGTTGGAGGTAGAAGAGGAAAACCAAGT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000021929.10
ENSMUST00000221904.2
CDS CAA 90 bp ATCTCTTGGACTTGGTTTTCCTCTTCTACCTCCAACTCAGGAACTTaGGCTGCAGACTCCTCGTCCAGGGCGCCCTGGCACTCCTCCATC +
Preference number: 6 (lower is better)
Translates to: ISWTWFSSSTSNSGT*AADSSSRAPWHSSI
Trigger: GATGGAGGAGTGCCAGGGCGCCCTGGACGAGGAGTCTGCAGCCAAAGTTCCTGAGTTGGAGGTAGAAGAGGAAAACCAAGTCCAAGAGAT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000021929.10
ENSMUST00000221904.2
CDS CCA 72 bp CCTGTCAACTGGTTTTTCATCGGTAAACTTCTCCACTaGCAAGTCAGCCTGTCTCTCAGTCTCATAGGGCCG +
Preference number: 6 (lower is better)
Translates to: PVNWFFIGKLLH*QVSLSLSLIGP
Trigger: CGGCCCTATGAGACTGAGAGACAGGCTGACTTGCCAGTGGAGAAGTTTACCGATGAAAAACCAGTTGACAGG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000021929.10
ENSMUST00000221904.2
CDS CAA 90 bp CCCAGGGGCGAATGCCACAGCCACCCATGCTGTCCTCCATTCTGTTaGTTTTATCATTGCTACTGTATCTCTCAAAGTCTCGTTTCCCTC +
Preference number: 6 (lower is better)
Translates to: PRGECHSHPCCPPFC*FYHCYCISQSLVSL
Trigger: GAGGGAAACGAGACTTTGAGAGATACAGTAGCAATGATAAAACAAACAGAATGGAGGACAGCATGGGTGGCTGTGGCATTCGCCCCTGGG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000021929.10
ENSMUST00000221904.2
CDS GCA 72 bp CATATCGTCTCTGTATCTGGACTTGTGAATCACCACTaGCTTGGAAGGAACTGTGGACTCTGGCTTCCGAAT +
Preference number: 6 (lower is better)
Translates to: HIVSVSGLVNHH*LGRNCGLWLPN
Trigger: ATTCGGAAGCCAGAGTCCACAGTTCCTTCCAAGGCAGTGGTGATTCACAAGTCCAGATACAGAGACGATATG
49% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000021929.10
CDS GCA 72 bp TACATCGTCTCTGTATCTGGACTTGTGAATCACCACTaGCTTGGAAGGAACTGTGGACTCTGGCTTCCGAAT +
Preference number: 6 (lower is better)
Translates to: YIVSVSGLVNHH*LGRNCGLWLPN
Trigger: ATTCGGAAGCCAGAGTCCACAGTTCCTTCCAAGGCAGTGGTGATTCACAAGTCCAGATACAGAGACGATGTA
49% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000221904.2
CDS CCA 72 bp CCTCATAGTCCTCCTTCACCATATCGTCTCTGTATCTaGACTTGTGAATCACCACTGCCTTGGAAGGAACTG +
Preference number: 6 (lower is better)
Translates to: PHSPPSPYRLCI*TCESPLPWKEL
Trigger: CAGTTCCTTCCAAGGCAGTGGTGATTCACAAGTCCAGATACAGAGACGATATGGTGAAGGAGGACTATGAGG
49% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000021929.10
CDS CCA 72 bp TCCTCTCAGTGGTCTGTCTCGATCAAACCTGTCAACTaGTTTTTCATCGGTAAACTTCTCCACTGGCAAGTC +
Preference number: 6 (lower is better)
Translates to: SSQWSVSIKPVN*FFIGKLLHWQV
Trigger: GACTTGCCAGTGGAGAAGTTTACCGATGAAAAACCAGTTGACAGGTTTGATCGAGACAGACCACTGAGAGGA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000021929.10
ENSMUST00000221904.2
CDS CCA 72 bp TTGCTACTGTATCTCTCAAAGTCTCGTTTCCCTCTTTaGTCAAAGGAGTCAAAAGCTCTGTTCCCAGGACCG +
Preference number: 6 (lower is better)
Translates to: LLLYLSKSRFPL*SKESKALFPGP
Trigger: CGGTCCTGGGAACAGAGCTTTTGACTCCTTTGACCAAAGAGGGAAACGAGACTTTGAGAGATACAGTAGCAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000021929.10
ENSMUST00000221904.2
CDS CAA 72 bp ATTGCTACTGTATCTCTCAAAGTCTCGTTTCCCTCTTaGGTCAAAGGAGTCAAAAGCTCTGTTCCCAGGACC +
Preference number: 6 (lower is better)
Translates to: IATVSLKVSFPS*VKGVKSSVPRT
Trigger: GGTCCTGGGAACAGAGCTTTTGACTCCTTTGACCAAAGAGGGAAACGAGACTTTGAGAGATACAGTAGCAAT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000021929.10
ENSMUST00000221904.2
CDS CAA 90 bp ATGCCACAGCCACCCATGCTGTCCTCCATTCTGTTTGTTTTATCATaGCTACTGTATCTCTCAAAGTCTCGTTTCCCTCTTTGGTCAAAG +
Preference number: 6 (lower is better)
Translates to: MPQPPMLSSILFVLS*LLYLSKSRFPLWSK
Trigger: CTTTGACCAAAGAGGGAAACGAGACTTTGAGAGATACAGTAGCAATGATAAAACAAACAGAATGGAGGACAGCATGGGTGGCTGTGGCAT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000021929.10
ENSMUST00000221904.2
CDS CAA 72 bp GAATGCCACAGCCACCCATGCTGTCCTCCATTCTGTTaGTTTTATCATTGCTACTGTATCTCTCAAAGTCTC +
Preference number: 6 (lower is better)
Translates to: ECHSHPCCPPFC*FYHCYCISQSL
Trigger: GAGACTTTGAGAGATACAGTAGCAATGATAAAACAAACAGAATGGAGGACAGCATGGGTGGCTGTGGCATTC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000021929.10
ENSMUST00000221904.2
CDS CAA 72 bp CCACCCATGCTGTCCTCCATTCTGTTTGTTTTATCATaGCTACTGTATCTCTCAAAGTCTCGTTTCCCTCTT +
Preference number: 6 (lower is better)
Translates to: PPMLSSILFVLS*LLYLSKSRFPL
Trigger: AAGAGGGAAACGAGACTTTGAGAGATACAGTAGCAATGATAAAACAAACAGAATGGAGGACAGCATGGGTGG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000021929.10
ENSMUST00000221904.2