Pregenerated sensors for H4C9 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000060639Ensembl transcript IDs: ENSMUST00000102977.4
Found 4 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | ACTCGGGAAGCAAAGGCAGACAGGCTTCTGAGTTCAAGGCCAGCCTaGTCTACAGAGTTCCAGGACAAAAAGAACACTGAAAAGCAACTT | + |
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Preference number: 1 (lower is better) Translates to: TREAKADRLLSSRPA*STEFQDKKNTEKQL Trigger: AAGTTGCTTTTCAGTGTTCTTTTTGTCCTGGAACTCTGTAGACCAGGCTGGCCTTGAACTCAGAAGCCTGTCTGCCTTTGCTTCCCGAGT 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000102977.4 |
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| 3UTR-3UTR CCA 90 bp | ATCCAGCCAAACCAAACATCTAGTTTGAGTTCATACACTATTTTCATCCCCCGAACTGGCCAGGTCTTGTaGCGCACGCCTTTAATCCCA | + |
|
Preference number: 2 (lower is better) Translates to: IQPNQTSSLSSYTIFIPRTGQVL*RTPLIP Trigger: TGGGATTAAAGGCGTGCGCCACAAGACCTGGCCAGT...TCGGGGGATGAAAATAGTGTATGAACTCAAACTAGATGTTTGGTTTGGCTGGAT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000102977.4 |
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| 3UTR TCA 72 bp | ATCCCAACACTCGGGAAGCAAAGGCAGACAGGCTTCTaGGTTCAAGGCCAGCCTGGTCTACAGAGTTCCAGG | + |
|
Preference number: 3 (lower is better) Translates to: IPTLGKQRQTGF*VQGQPGLQSSR Trigger: CCTGGAACTCTGTAGACCAGGCTGGCCTTGAACTCAGAAGCCTGTCTGCCTTTGCTTCCCGAGTGTTGGGAT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000102977.4 |
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| CDS-3UTR GCA 90 bp | ATAGTTCTACAAAAGCTTAACACTGGCCAGGTCTTGTGGCGCACGCCTTTAATCGCTTGGCGCCGCCTTTaGCCAGGCCTTTTCCTCCTT | + |
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Preference number: 4 (lower is better) Translates to: IVLQKLNTGQVLWRTPLIAWRRL*PGLFLL Trigger: AAGGAGGAAAAGGCCTGGGCAAAGGCGGCGCCAAGC...GATTAAAGGCGTGCGCCACAAGACCTGGCCAGTGTTAAGCTTTTGTAGAACTAT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000102977.4 |
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