Pregenerated sensors for H4C4 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000061482

Ensembl transcript IDs: ENSMUST00000102968.3

Found 8 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type	Sensor	Details
3UTR TCA 90 bp	AAACTTGAACATAATTCAGTGTTCCTAGGTTTCCAAGGCCTGGATTaGTTAGAGGGTTTGGTTTTGAGACAGGATAGCATCTATACCTTA	+
Preference number: 1 (lower is better) Translates to: KLEHNSVFLGFQGLD*LEGLVLRQDSIYTL Trigger: TAAGGTATAGATGCTATCCTGTCTCAAAACCAAACCCTCTAATCAATCCAGGCCTTGGAAACCTAGGAACACTGAATTATGTTCAAGTTT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000102968.3
3UTR-3UTR TCA 90 bp	GAAAGCTGGGTGTGGTGGACCACGATTTTAATCCCAGTACGTGGGAGGCAGAGGTTCCAAGGCCTGGATTaGTTAGAGGGTTTGGTTTTG	+
Preference number: 2 (lower is better) Translates to: ESWVWWTTILIPVRGRQRFQGLD*LEGLVL Trigger: CAAAACCAAACCCTCTAATCAATCCAGGCCTTGGAA...CCTCTGCCTCCCACGTACTGGGATTAAAATCGTGGTCCACCACACCCAGCTTTC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000102968.3
3UTR-3UTR CCA 90 bp	GAAAGCTGGGTGTGGTGGACCACGATTTTAATCCCAGTACGTGGGAGGCAGAGGCCTGAAAAGGGCCTTTaGTTTTTGGGTGAAGAAAAA	+
Preference number: 2 (lower is better) Translates to: ESWVWWTTILIPVRGRQRPEKGL*FLGEEK Trigger: TTTTTCTTCACCCAAAAACCAAAGGCCCTTTTCAGG...CCTCTGCCTCCCACGTACTGGGATTAAAATCGTGGTCCACCACACCCAGCTTTC 49% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000102968.3
3UTR-3UTR TCA 90 bp	GAAGAAATTGTAGAAAGCTCCAGGTTAGAAAACTTGAACATAATTCAGTGTTCCGTCAGCATTAAAGAATaGGACAACAGGCCTGCTTTT	+
Preference number: 2 (lower is better) Translates to: EEIVESSRLENLNIIQCSVSIKE*DNRPAF Trigger: AAAAGCAGGCCTGTTGTCTCATTCTTTAATGCTGAC...GGAACACTGAATTATGTTCAAGTTTTCTAACCTGGAGCTTTCTACAATTTCTTC 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000102968.3
3UTR-3UTR CAA 90 bp	GGTGTGGTGGACCACGATTTTAATCCCAGTACGTGGGAGGCAGAGGTAGGAAGATTTCCAAGGCCTGGATaGATTAGAGGGTTTGGTTTT	+
Preference number: 3 (lower is better) Translates to: GVVDHDFNPSTWEAEVGRFPRPG*IRGFGF Trigger: AAAACCAAACCCTCTAATCAATCCAGGCCTTGGAAA...TCTTCCTACCTCTGCCTCCCACGTACTGGGATTAAAATCGTGGTCCACCACACC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000102968.3
3UTR GCA 72 bp	TTTAGGCTATCAATACTGAAGATAGACAGGTGGACCTaGCTAAACAGATACTATGTATCGAGCCAGTCCCAG	+
Preference number: 3 (lower is better) Translates to: FRLSILKIDRWT*LNRYYVSSQSQ Trigger: CTGGGACTGGCTCGATACATAGTATCTGTTTAGGCAGGTCCACCTGTCTATCTTCAGTATTGATAGCCTAAA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000102968.3
3UTR CCA 72 bp	CCTGCTTTTAGGCTATCAATACTGAAGATAGACAGGTaGACCTGCCTAAACAGATACTATGTATCGAGCCAG	+
Preference number: 3 (lower is better) Translates to: PAFRLSILKIDR*TCLNRYYVSSQ Trigger: CTGGCTCGATACATAGTATCTGTTTAGGCAGGTCCACCTGTCTATCTTCAGTATTGATAGCCTAAAAGCAGG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000102968.3
3UTR TCA 72 bp	CATAATTCAGTGTTCCTAGGTTTCCAAGGCCTGGATTaGTTAGAGGGTTTGGTTTTGAGACAGGATAGCATC	+
Preference number: 3 (lower is better) Translates to: HNSVFLGFQGLD*LEGLVLRQDSI Trigger: GATGCTATCCTGTCTCAAAACCAAACCCTCTAATCAATCCAGGCCTTGGAAACCTAGGAACACTGAATTATG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000102968.3