Pregenerated sensors for H4C14 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000091405Ensembl transcript IDs: ENSMUST00000171473.3
Found 24 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | TGTCCCACCACGTGTCTCTTTAAATCCCTGTTCCGTTCTTGTCCCTaGTTGTCTCCCGCCTGTCCGGCCCAAGCTTCTGCTGCCAGCTCT | + |
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Preference number: 1 (lower is better) Translates to: CPTTCLFKSLFRSCP*LSPACPAQASAASS Trigger: AGAGCTGGCAGCAGAAGCTTGGGCCGGACAGGCGGGAGACAAGCAGGGACAAGAACGGAACAGGGATTTAAAGAGACACGTGGTGGGACA 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000171473.3 |
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| 3UTR GCA 90 bp | TTCTTGTCCCTGCTTGTCTCCCGCCTGTCCGGCCCAAGCTTCTGCTaGCAGCTCTTTATTCTGCAGGAGGCCATACGCCTAACTCTTCCA | + |
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Preference number: 1 (lower is better) Translates to: FLSLLVSRLSGPSFC*QLFILQEAIRLTLP Trigger: TGGAAGAGTTAGGCGTATGGCCTCCTGCAGAATAAAGAGCTGGCAGCAGAAGCTTGGGCCGGACAGGCGGGAGACAAGCAGGGACAAGAA 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000171473.3 |
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| 3UTR-3UTR TCA 90 bp | TTCTTGTCCCTGCTTGTCTCCCGCCTGTCCGGCCCAAGCTTCTGCTGCCAGCTCAATCTTTTGGGAAGATaGGGAAGGATAAAAGGTGGG | + |
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Preference number: 2 (lower is better) Translates to: FLSLLVSRLSGPSFCCQLNLLGR*GRIKGG Trigger: CCCACCTTTTATCCTTCCTCATCTTCCCAAAAGATT...GAGCTGGCAGCAGAAGCTTGGGCCGGACAGGCGGGAGACAAGCAGGGACAAGAA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000171473.3 |
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| 3UTR-3UTR TCA 90 bp | CGAATACACTGGTCCTCTCTCTTCAGTCACACCAGAAGAGGGCATCGGATCCTAGTGGTTGCTGAGATTTaGGCTCAGGACCTCTCAGTC | + |
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Preference number: 2 (lower is better) Translates to: RIHWSSLFSHTRRGHRILVVAEI*AQDLSV Trigger: GACTGAGAGGTCCTGAGCTCAAATCTCAGCAACCAC...TAGGATCCGATGCCCTCTTCTGGTGTGACTGAAGAGAGAGGACCAGTGTATTCG 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000171473.3 |
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| 3UTR-3UTR CCA 90 bp | CCGGTCAAGCACAGCCACTCATTGGAAACACAGGGACACAGCCACATAGCCATTTGTGAGCTATCCTGCTaGATGCTATCTATCCGCCGT | + |
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Preference number: 2 (lower is better) Translates to: PVKHSHSLETQGHSHIAICELSC*MLSIRR Trigger: ACGGCGGATAGATAGCATCCAGCAGGATAGCTCACA...AATGGCTATGTGGCTGTGTCCCTGTGTTTCCAATGAGTGGCTGTGCTTGACCGG 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000171473.3 |
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| 3UTR-3UTR TCA 90 bp | CGAATACACTGGTCCTCTCTCTTCAGTCACACCAGAAGAGGGCATCGGATCCTACCCTTGTTTCCTCCCTaGCTTGCTGGGATTATAGCT | + |
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Preference number: 2 (lower is better) Translates to: RIHWSSLFSHTRRGHRILPLFPP*LAGIIA Trigger: AGCTATAATCCCAGCAAGTCAGGGAGGAAACAAGGG...TAGGATCCGATGCCCTCTTCTGGTGTGACTGAAGAGAGAGGACCAGTGTATTCG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000171473.3 |
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| 3UTR-3UTR TCA 90 bp | CGAATACACTGGTCCTCTCTCTTCAGTCACACCAGAAGAGGGCATCGGATCCTATGCAGAAGTGGTCCTTaGACCCCTAACCCTTGTTTC | + |
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Preference number: 2 (lower is better) Translates to: RIHWSSLFSHTRRGHRILCRSGP*TPNPCF Trigger: GAAACAAGGGTTAGGGGTTCAAGGACCACTTCTGCA...TAGGATCCGATGCCCTCTTCTGGTGTGACTGAAGAGAGAGGACCAGTGTATTCG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000171473.3 |
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| 3UTR CAA 90 bp | GCACAGCCACTCATTGGAAACACAGGGACACAGCCACATAGCCATTaGATGTGTGGACATAGGTCATCCCATCCAAAGGGTCTCCTTATT | + |
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Preference number: 2 (lower is better) Translates to: AQPLIGNTGTQPHSH*MCGHRSSHPKGLLI Trigger: AATAAGGAGACCCTTTGGATGGGATGACCTATGTCCACACATCAAATGGCTATGTGGCTGTGTCCCTGTGTTTCCAATGAGTGGCTGTGC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000171473.3 |
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| 3UTR-3UTR TCA 90 bp | CGAATACACTGGTCCTCTCTCTTCAGTCACACCAGAAGAGGGCATCGGATCCTAAGCCACATAGCCATTTaGTGTGTGGACATAGGTCAT | + |
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Preference number: 2 (lower is better) Translates to: RIHWSSLFSHTRRGHRILSHIAI*CVDIGH Trigger: ATGACCTATGTCCACACATCAAATGGCTATGTGGCT...TAGGATCCGATGCCCTCTTCTGGTGTGACTGAAGAGAGAGGACCAGTGTATTCG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000171473.3 |
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| 3UTR-3UTR CCA 90 bp | CGAATACACTGGTCCTCTCTCTTCAGTCACACCAGAAGAGGGCATCGGATCCTAATAGCTGTCACCACCTaGCTTGCTTATGTTATGGGA | + |
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Preference number: 2 (lower is better) Translates to: RIHWSSLFSHTRRGHRILIAVTT*LAYVMG Trigger: TCCCATAACATAAGCAAGCCAGGTGGTGACAGCTAT...TAGGATCCGATGCCCTCTTCTGGTGTGACTGAAGAGAGAGGACCAGTGTATTCG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000171473.3 |
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| 3UTR-3UTR GCA 90 bp | CCGGTCAAGCACAGCCACTCATTGGAAACACAGGGACACAGCCACATAGCCATTTCCTTATTGCAATTCTaGTCCAAACAGCTAAAGAAA | + |
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Preference number: 2 (lower is better) Translates to: PVKHSHSLETQGHSHIAISLLQF*SKQLKK Trigger: TTTCTTTAGCTGTTTGGAGCAGAATTGCAATAAGGA...AATGGCTATGTGGCTGTGTCCCTGTGTTTCCAATGAGTGGCTGTGCTTGACCGG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000171473.3 |
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| 3UTR GCA 72 bp | CTGCTTGTCTCCCGCCTGTCCGGCCCAAGCTTCTGCTaGCAGCTCTTTATTCTGCAGGAGGCCATACGCCTA | + |
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Preference number: 3 (lower is better) Translates to: LLVSRLSGPSFC*QLFILQEAIRL Trigger: TAGGCGTATGGCCTCCTGCAGAATAAAGAGCTGGCAGCAGAAGCTTGGGCCGGACAGGCGGGAGACAAGCAG 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000171473.3 |
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| 3UTR-3UTR CAA 90 bp | GTTCTTGTCCCTGCTTGTCTCCCGCCTGTCCGGCCCAAGCTTCTGCTGCCAGCTCTGAAGAGACTGTGGTaGGCCCTAAAAAGGGCCGTT | + |
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Preference number: 3 (lower is better) Translates to: VLVPACLPPVRPKLLLPALKRLW*ALKRAV Trigger: AACGGCCCTTTTTAGGGCCAACCACAGTCTCTTCAG...AGCTGGCAGCAGAAGCTTGGGCCGGACAGGCGGGAGACAAGCAGGGACAAGAAC 59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000171473.3 |
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| 3UTR-3UTR CAA 90 bp | GTTCTTGTCCCTGCTTGTCTCCCGCCTGTCCGGCCCAAGCTTCTGCTGCCAGCTCAAAGGGTCTCCTTATaGCAATTCTGCTCCAAACAG | + |
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Preference number: 3 (lower is better) Translates to: VLVPACLPPVRPKLLLPAQRVSL*QFCSKQ Trigger: CTGTTTGGAGCAGAATTGCAATAAGGAGACCCTTTG...AGCTGGCAGCAGAAGCTTGGGCCGGACAGGCGGGAGACAAGCAGGGACAAGAAC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000171473.3 |
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| 3UTR-3UTR CAA 90 bp | CGAATACACTGGTCCTCTCTCTTCAGTCACACCAGAAGAGGGCATCGGATCCTAAACCCGACCGACTTCTaGCCACTGTGTCCCACCACG | + |
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Preference number: 3 (lower is better) Translates to: RIHWSSLFSHTRRGHRILNPTDF*PLCPTT Trigger: CGTGGTGGGACACAGTGGCAAGAAGTCGGTCGGGTT...TAGGATCCGATGCCCTCTTCTGGTGTGACTGAAGAGAGAGGACCAGTGTATTCG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000171473.3 |
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| 3UTR GCA 72 bp | ACGTGTCTCTTTAAATCCCTGTTCCGTTCTTGTCCCTaGTTGTCTCCCGCCTGTCCGGCCCAAGCTTCTGCT | + |
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Preference number: 3 (lower is better) Translates to: TCLFKSLFRSCP*LSPACPAQASA Trigger: AGCAGAAGCTTGGGCCGGACAGGCGGGAGACAAGCAGGGACAAGAACGGAACAGGGATTTAAAGAGACACGT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000171473.3 |
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| 3UTR TCA 72 bp | TTCAGGCTTTCCCCCAAACCATGCAGAAGTGGTCCTTaGACCCCTAACCCTTGTTTCCTCCCTGACTTGCTG | + |
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Preference number: 3 (lower is better) Translates to: FRLSPKPCRSGP*TPNPCFLPDLL Trigger: CAGCAAGTCAGGGAGGAAACAAGGGTTAGGGGTTCAAGGACCACTTCTGCATGGTTTGGGGGAAAGCCTGAA 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000171473.3 |
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| 3UTR CCA 72 bp | CTTGAACCCCTAACCCTTGTTTCCTCCCTGACTTGCTaGGATTATAGCTGTCACCACCTGGCTTGCTTATGT | + |
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Preference number: 3 (lower is better) Translates to: LEPLTLVSSLTC*DYSCHHLACLC Trigger: ACATAAGCAAGCCAGGTGGTGACAGCTATAATCCCAGCAAGTCAGGGAGGAAACAAGGGTTAGGGGTTCAAG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000171473.3 |
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| 3UTR GCA 72 bp | GGTCATCCCATCCAAAGGGTCTCCTTATTGCAATTCTaGTCCAAACAGCTAAAGAAAATCTTAGCCAGTCTC | + |
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Preference number: 3 (lower is better) Translates to: GHPIQRVSLLQF*SKQLKKILASL Trigger: GAGACTGGCTAAGATTTTCTTTAGCTGTTTGGAGCAGAATTGCAATAAGGAGACCCTTTGGATGGGATGACC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000171473.3 |
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| CDS-3UTR GCA 90 bp | CCGGTCAAGCACAGCCACTCATTGGAAACACAGGGACACAGCCACATAGCCATTGCTTGGCGCCACCCTTaGCTAGACCCTTTCCACCCT | + |
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Preference number: 4 (lower is better) Translates to: PVKHSHSLETQGHSHIAIAWRHP*LDPFHP Trigger: AGGGTGGAAAGGGTCTAGGCAAGGGTGGCGCCAAGC...AATGGCTATGTGGCTGTGTCCCTGTGTTTCCAATGAGTGGCTGTGCTTGACCGG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000171473.3 |
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| 3UTR CAA 72 bp | CTCATTGGAAACACAGGGACACAGCCACATAGCCATTaGATGTGTGGACATAGGTCATCCCATCCAAAGGGT | + |
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Preference number: 4 (lower is better) Translates to: LIGNTGTQPHSH*MCGHRSSHPKG Trigger: ACCCTTTGGATGGGATGACCTATGTCCACACATCAAATGGCTATGTGGCTGTGTCCCTGTGTTTCCAATGAG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000171473.3 |
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| 3UTR CAA 72 bp | CCTGGCTTGCTTATGTTATGGGACATTAAAATGTCGTaGCAATTGTATCCCAGCAGAGCTTCGATCCCAGTC | + |
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Preference number: 4 (lower is better) Translates to: PGLLMLWDIKMS*QLYPSRASIPV Trigger: GACTGGGATCGAAGCTCTGCTGGGATACAATTGCAACGACATTTTAATGTCCCATAACATAAGCAAGCCAGG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000171473.3 |
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| 3UTR CAA 72 bp | GTGGACATAGGTCATCCCATCCAAAGGGTCTCCTTATaGCAATTCTGCTCCAAACAGCTAAAGAAAATCTTA | + |
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Preference number: 4 (lower is better) Translates to: VDIGHPIQRVSL*QFCSKQLKKIL Trigger: TAAGATTTTCTTTAGCTGTTTGGAGCAGAATTGCAATAAGGAGACCCTTTGGATGGGATGACCTATGTCCAC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000171473.3 |
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| CDS-3UTR CAA 90 bp | AGGGTCTCCTTATTGCAATTCTGCTCCAAACAGCTAAAGAAAATCTTAGCCAGTGTGATACCCTGGATGTaGTCACGCAAGACTTTGCGA | + |
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Preference number: 5 (lower is better) Translates to: RVSLLQFCSKQLKKILASVIPWM*SRKTLR Trigger: TCGCAAAGTCTTGCGTGACAACATCCAGGGTATCAC...ACTGGCTAAGATTTTCTTTAGCTGTTTGGAGCAGAATTGCAATAAGGAGACCCT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000171473.3 |
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