Pregenerated sensors for H3F3B (Mus musculus)
Ensembl gene IDs: ENSMUSG00000016559Ensembl transcript IDs: ENSMUST00000016703.8, ENSMUST00000106454.8
Found 16 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR-3UTR GCA 90 bp | CCAACCTGCTGCTCTACAGTGGGAGTTGTGGCCAAGGCTACAGAGAAACTGTTTGTGTCAGCAAATACTTaGATTTTTAGAGTGTATTGG | + |
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Preference number: 2 (lower is better) Translates to: PTCCSTVGVVAKATEKLFVSANT*IFRVYW Trigger: CCAATACACTCTAAAAATGCAAGTATTTGCTGACAC...AAACAGTTTCTCTGTAGCCTTGGCCACAACTCCCACTGTAGAGCAGCAGGTTGG 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000106454.8 |
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| 3UTR-3UTR CCA 90 bp | CCAACCTGCTGCTCTACAGTGGGAGTTGTGGCCAAGGCTACAGAGAAACTGTTTTATCACAGTGATGTATaGTTAAACACTTGGATCAAG | + |
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Preference number: 2 (lower is better) Translates to: PTCCSTVGVVAKATEKLFYHSDV*LNTWIK Trigger: CTTGATCCAAGTGTTTAACCATACATCACTGTGATA...AAACAGTTTCTCTGTAGCCTTGGCCACAACTCCCACTGTAGAGCAGCAGGTTGG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000106454.8 |
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| 3UTR-3UTR TCA 90 bp | TGTATTGTAGTTATTAAGCCCACCCATGAACCACAAGCAGATTTTGTCAGACTCAGAGGTCCAAGAAGTTaGAGCTGTGTTCTTACTCCC | + |
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Preference number: 2 (lower is better) Translates to: CIVVIKPTHEPQADFVRLRGPRS*SCVLTP Trigger: GGGAGTAAGAACACAGCTTCAACTTCTTGGACCTCT...GAGTCTGACAAAATCTGCTTGTGGTTCATGGGTGGGCTTAATAACTACAATACA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000016703.8 ENSMUST00000106454.8 |
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| 3UTR-3UTR GCA 90 bp | TGTATTGTAGTTATTAAGCCCACCCATGAACCACAAGCAGATTTTGTCAGACTCGTGTCAGCAAATACTTaGATTTTTAGAGTGTATTGG | + |
|
Preference number: 2 (lower is better) Translates to: CIVVIKPTHEPQADFVRLVSANT*IFRVYW Trigger: CCAATACACTCTAAAAATGCAAGTATTTGCTGACAC...GAGTCTGACAAAATCTGCTTGTGGTTCATGGGTGGGCTTAATAACTACAATACA 38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000016703.8 ENSMUST00000106454.8 |
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| 3UTR-3UTR CCA 90 bp | TGTATTGTAGTTATTAAGCCCACCCATGAACCACAAGCAGATTTTGTCAGACTCTATCACAGTGATGTATaGTTAAACACTTGGATCAAG | + |
|
Preference number: 2 (lower is better) Translates to: CIVVIKPTHEPQADFVRLYHSDV*LNTWIK Trigger: CTTGATCCAAGTGTTTAACCATACATCACTGTGATA...GAGTCTGACAAAATCTGCTTGTGGTTCATGGGTGGGCTTAATAACTACAATACA 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000016703.8 ENSMUST00000106454.8 |
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| 3UTR-3UTR CAA 90 bp | CCAACCTGCTGCTCTACAGTGGGAGTTGTGGCCAAGGCTACAGAGAAACTGTTTCAGAGGTCCAAGAAGTaGAAGCTGTGTTCTTACTCC | + |
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Preference number: 3 (lower is better) Translates to: PTCCSTVGVVAKATEKLFQRSKK*KLCSYS Trigger: GGAGTAAGAACACAGCTTCAACTTCTTGGACCTCTG...AAACAGTTTCTCTGTAGCCTTGGCCACAACTCCCACTGTAGAGCAGCAGGTTGG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000106454.8 |
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| 3UTR-3UTR CAA 90 bp | CCAACCTGCTGCTCTACAGTGGGAGTTGTGGCCAAGGCTACAGAGAAACTGTTTGCTGGTGTGAATAGCTaGTTATTTTACTCTAGAGCC | + |
|
Preference number: 3 (lower is better) Translates to: PTCCSTVGVVAKATEKLFAGVNS*LFYSRA Trigger: GGCTCTAGAGTAAAATAACAAGCTATTCACACCAGC...AAACAGTTTCTCTGTAGCCTTGGCCACAACTCCCACTGTAGAGCAGCAGGTTGG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000106454.8 |
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| 3UTR-3UTR CAA 90 bp | CCAACCTGCTGCTCTACAGTGGGAGTTGTGGCCAAGGCTACAGAGAAACTGTTTTGTCAGACTCATGAATaGTGTCAGCAAATACTTGCA | + |
|
Preference number: 3 (lower is better) Translates to: PTCCSTVGVVAKATEKLFCQTHE*CQQILA Trigger: TGCAAGTATTTGCTGACACAATTCATGAGTCTGACA...AAACAGTTTCTCTGTAGCCTTGGCCACAACTCCCACTGTAGAGCAGCAGGTTGG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000106454.8 |
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| 3UTR-3UTR CAA 90 bp | TGTATTGTAGTTATTAAGCCCACCCATGAACCACAAGCAGATTTTGTCAGACTCCAGAGGTCCAAGAAGTaGAAGCTGTGTTCTTACTCC | + |
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Preference number: 3 (lower is better) Translates to: CIVVIKPTHEPQADFVRLQRSKK*KLCSYS Trigger: GGAGTAAGAACACAGCTTCAACTTCTTGGACCTCTG...GAGTCTGACAAAATCTGCTTGTGGTTCATGGGTGGGCTTAATAACTACAATACA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000016703.8 ENSMUST00000106454.8 |
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| 3UTR-3UTR CAA 90 bp | TGTATTGTAGTTATTAAGCCCACCCATGAACCACAAGCAGATTTTGTCAGACTCGCTGGTGTGAATAGCTaGTTATTTTACTCTAGAGCC | + |
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Preference number: 3 (lower is better) Translates to: CIVVIKPTHEPQADFVRLAGVNS*LFYSRA Trigger: GGCTCTAGAGTAAAATAACAAGCTATTCACACCAGC...GAGTCTGACAAAATCTGCTTGTGGTTCATGGGTGGGCTTAATAACTACAATACA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000016703.8 ENSMUST00000106454.8 |
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| CDS-3UTR TCA 90 bp | CCAACCTGCTGCTCTACAGTGGGAGTTGTGGCCAAGGCTACAGAGAAACTGTTTGCTTCGCTAGCCTCCTaGAGGGCACCGATGGCTGCA | + |
|
Preference number: 4 (lower is better) Translates to: PTCCSTVGVVAKATEKLFASLAS*RAPMAA Trigger: TGCAGCCATCGGTGCCCTTCAGGAGGCTAGCGAAGC...AAACAGTTTCTCTGTAGCCTTGGCCACAACTCCCACTGTAGAGCAGCAGGTTGG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000106454.8 |
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| CDS-3UTR TCA 90 bp | TGTATTGTAGTTATTAAGCCCACCCATGAACCACAAGCAGATTTTGTCAGACTCGCTTCGCTAGCCTCCTaGAGGGCACCGATGGCTGCA | + |
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Preference number: 4 (lower is better) Translates to: CIVVIKPTHEPQADFVRLASLAS*RAPMAA Trigger: TGCAGCCATCGGTGCCCTTCAGGAGGCTAGCGAAGC...GAGTCTGACAAAATCTGCTTGTGGTTCATGGGTGGGCTTAATAACTACAATACA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000016703.8 ENSMUST00000106454.8 |
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| CDS-3UTR TCA 90 bp | TGTATTGTAGTTATTAAGCCCACCCATGAACCACAAGCAGATTTTGTCAGACTCACCTCAAGTCGGTTTTaGAATCCTGGGCGATCTCCC | + |
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Preference number: 4 (lower is better) Translates to: CIVVIKPTHEPQADFVRLTSSRF*NPGRSP Trigger: GGGAGATCGCCCAGGATTTCAAAACCGACTTGAGGT...GAGTCTGACAAAATCTGCTTGTGGTTCATGGGTGGGCTTAATAACTACAATACA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000016703.8 ENSMUST00000106454.8 |
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| CDS-3UTR GCA 90 bp | TGTATTGTAGTTATTAAGCCCACCCATGAACCACAAGCAGATTTTGTCAGACTCAAGGGCACCGATGGCTaGACTTTGAAACCTCAAGTC | + |
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Preference number: 4 (lower is better) Translates to: CIVVIKPTHEPQADFVRLKGTDG*TLKPQV Trigger: GACTTGAGGTTTCAAAGTGCAGCCATCGGTGCCCTT...GAGTCTGACAAAATCTGCTTGTGGTTCATGGGTGGGCTTAATAACTACAATACA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000016703.8 ENSMUST00000106454.8 |
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| CDS-3UTR CAA 90 bp | CCAACCTGCTGCTCTACAGTGGGAGTTGTGGCCAAGGCTACAGAGAAACTGTTTACCGATGGCTGCACTTaGAAACCTCAAGTCGGTTTT | + |
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Preference number: 5 (lower is better) Translates to: PTCCSTVGVVAKATEKLFTDGCT*KPQVGF Trigger: AAAACCGACTTGAGGTTTCAAAGTGCAGCCATCGGT...AAACAGTTTCTCTGTAGCCTTGGCCACAACTCCCACTGTAGAGCAGCAGGTTGG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000106454.8 |
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| CDS-3UTR CAA 90 bp | TGTATTGTAGTTATTAAGCCCACCCATGAACCACAAGCAGATTTTGTCAGACTCACCGATGGCTGCACTTaGAAACCTCAAGTCGGTTTT | + |
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Preference number: 5 (lower is better) Translates to: CIVVIKPTHEPQADFVRLTDGCT*KPQVGF Trigger: AAAACCGACTTGAGGTTTCAAAGTGCAGCCATCGGT...GAGTCTGACAAAATCTGCTTGTGGTTCATGGGTGGGCTTAATAACTACAATACA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000016703.8 ENSMUST00000106454.8 |
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