Pregenerated sensors for H3C7 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000100210

Ensembl transcript IDs: ENSMUST00000075558.5

Found 7 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type	Sensor	Details
3UTR GCA 90 bp	AATGATATCCTGAAAGCCTTGTTTCCAAAAACAGGCAGCTCAGACTaGTTCGTCGGGTGGTGCTCATCATTGTCAAGAAAGGCTATAATA	+
Preference number: 1 (lower is better) Translates to: NDILKALFPKTGSSD*FVGWCSSLSRKAII Trigger: TATTATAGCCTTTCTTGACAATGATGAGCACCACCCGACGAAGCAGTCTGAGCTGCCTGTTTTTGGAAACAAGGCTTTCAGGATATCATT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000075558.5
3UTR CAA 90 bp	CCAAAAACAGGCAGCTCAGACTGCTTCGTCGGGTGGTGCTCATCATaGTCAAGAAAGGCTATAATAGGAAACCCTGGAACACTCTACAAA	+
Preference number: 2 (lower is better) Translates to: PKTGSSDCFVGWCSS*SRKAIIGNPGTLYK Trigger: TTTGTAGAGTGTTCCAGGGTTTCCTATTATAGCCTTTCTTGACAATGATGAGCACCACCCGACGAAGCAGTCTGAGCTGCCTGTTTTTGG 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000075558.5
3UTR GCA 72 bp	CCAAAAACAGGCAGCTCAGACTGCTTCGTCGGGTGGTaGTCATCATTGTCAAGAAAGGCTATAATAGGAAAC	+
Preference number: 3 (lower is better) Translates to: PKTGSSDCFVGW*SSLSRKAIIGN Trigger: GTTTCCTATTATAGCCTTTCTTGACAATGATGAGCACCACCCGACGAAGCAGTCTGAGCTGCCTGTTTTTGG 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000075558.5
3UTR CCA 72 bp	TTTCCAAAAACAGGCAGCTCAGACTGCTTCGTCGGGTaGTGCTCATCATTGTCAAGAAAGGCTATAATAGGA	+
Preference number: 3 (lower is better) Translates to: FPKTGSSDCFVG*CSSLSRKAIIG Trigger: TCCTATTATAGCCTTTCTTGACAATGATGAGCACCACCCGACGAAGCAGTCTGAGCTGCCTGTTTTTGGAAA 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000075558.5
3UTR CCA 72 bp	CTCATCATTGTCAAGAAAGGCTATAATAGGAAACCCTaGAACACTCTACAAACTTGTACTACAGCATCTTTG	+
Preference number: 3 (lower is better) Translates to: LIIVKKGYNRKP*NTLQTCTTASL Trigger: CAAAGATGCTGTAGTACAAGTTTGTAGAGTGTTCCAGGGTTTCCTATTATAGCCTTTCTTGACAATGATGAG 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000075558.5
CDS-3UTR GCA 90 bp	CTTGTTTCCAAAAACAGGCAGCTCAGACTGCTTCGTCGGGTGGTGCTCATCATTGCCTCGCTCGCCTCCTaGAGAGCCATGACGGCCGAG	+
Preference number: 4 (lower is better) Translates to: LVSKNRQLRLLRRVVLIIASLAS*RAMTAE Trigger: CTCGGCCGTCATGGCTCTGCAGGAGGCGAGCGAGGC...AATGATGAGCACCACCCGACGAAGCAGTCTGAGCTGCCTGTTTTTGGAAACAAG 58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000075558.5
3UTR CAA 72 bp	GGCAGCTCAGACTGCTTCGTCGGGTGGTGCTCATCATaGTCAAGAAAGGCTATAATAGGAAACCCTGGAACA	+
Preference number: 4 (lower is better) Translates to: GSSDCFVGWCSS*SRKAIIGNPGT Trigger: TGTTCCAGGGTTTCCTATTATAGCCTTTCTTGACAATGATGAGCACCACCCGACGAAGCAGTCTGAGCTGCC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000075558.5

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