Pregenerated sensors for H3C4 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000099583

Ensembl transcript IDs: ENSMUST00000105105.4

Found 9 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type	Sensor	Details
3UTR GCA 90 bp	CTTAGATTGGGCCAGTTAGCTCCAGCTCTGATTACCGCCAAGGCCTaGAGAGCCCACATTCCAAGTTTCTCTCCAGAGAACTCGCCTATT	+
Preference number: 1 (lower is better) Translates to: LRLGQLAPALITAKA*RAHIPSFSPENSPI Trigger: AATAGGCGAGTTCTCTGGAGAGAAACTTGGAATGTGGGCTCTGCAGGCCTTGGCGGTAATCAGAGCTGGAGCTAACTGGCCCAATCTAAG 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000105105.4
3UTR TCA 90 bp	CCCATCCGAAAGCAGTGTTCCTTAATCCTGGCTTGCTTGACCTCTTaGCTTAGATTGGGCCAGTTAGCTCCAGCTCTGATTACCGCCAAG	+
Preference number: 1 (lower is better) Translates to: PIRKQCSLILACLTS*LRLGQLAPALITAK Trigger: CTTGGCGGTAATCAGAGCTGGAGCTAACTGGCCCAATCTAAGTCAAGAGGTCAAGCAAGCCAGGATTAAGGAACACTGCTTTCGGATGGG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000105105.4
3UTR-3UTR GCA 90 bp	TTAACCTATTTCAGAATTAAGACATTGTACCTGAGAGCACACAGAGGAATGTGGATTACCGCCAAGGCCTaGAGAGCCCACATTCCAAGT	+
Preference number: 2 (lower is better) Translates to: LTYFRIKTLYLRAHRGMWITAKA*RAHIPS Trigger: ACTTGGAATGTGGGCTCTGCAGGCCTTGGCGGTAAT...CCACATTCCTCTGTGTGCTCTCAGGTACAATGTCTTAATTCTGAAATAGGTTAA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000105105.4
3UTR-3UTR CCA 90 bp	TCTCCAGAGAACTCGCCTATTTCAAGAGACATGGCATGTATTTTAGCCATGATCTCTGAAAAGAGCCTTTaGGGTCCAAATTCACTCACT	+
Preference number: 2 (lower is better) Translates to: SPENSPISRDMACILAMISEKSL*GPNSLT Trigger: AGTGAGTGAATTTGGACCCCAAAGGCTCTTTTCAGA...GATCATGGCTAAAATACATGCCATGTCTCTTGAAATAGGCGAGTTCTCTGGAGA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000105105.4
3UTR GCA 72 bp	GGCCAGTTAGCTCCAGCTCTGATTACCGCCAAGGCCTaGAGAGCCCACATTCCAAGTTTCTCTCCAGAGAAC	+
Preference number: 3 (lower is better) Translates to: GQLAPALITAKA*RAHIPSFSPEN Trigger: GTTCTCTGGAGAGAAACTTGGAATGTGGGCTCTGCAGGCCTTGGCGGTAATCAGAGCTGGAGCTAACTGGCC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000105105.4
3UTR-3UTR CAA 90 bp	CAGTTAGCTCCAGCTCTGATTACCGCCAAGGCCTGCAGAGCCCACATTCCAAGTTACCAAGTAATGGAGTaGCTGAGTGGGGTTTGTAAA	+
Preference number: 3 (lower is better) Translates to: QLAPALITAKACRAHIPSYQVME*LSGVCK Trigger: TTTACAAACCCCACTCAGCAACTCCATTACTTGGTA...ACTTGGAATGTGGGCTCTGCAGGCCTTGGCGGTAATCAGAGCTGGAGCTAACTG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000105105.4
3UTR TCA 72 bp	CTATTTCCTTGCCTCACCATACGAGTACAGGAATGGTaGAGTGTTAAGTCCCCTCCCGCACGATTGTGGTTA	+
Preference number: 3 (lower is better) Translates to: LFPCLTIRVQEW*SVKSPPARLWL Trigger: TAACCACAATCGTGCGGGAGGGGACTTAACACTTCACCATTCCTGTACTCGTATGGTGAGGCAAGGAAATAG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000105105.4
3UTR TCA 72 bp	AAGCAGTGTTCCTTAATCCTGGCTTGCTTGACCTCTTaGCTTAGATTGGGCCAGTTAGCTCCAGCTCTGATT	+
Preference number: 3 (lower is better) Translates to: KQCSLILACLTS*LRLGQLAPALI Trigger: AATCAGAGCTGGAGCTAACTGGCCCAATCTAAGTCAAGAGGTCAAGCAAGCCAGGATTAAGGAACACTGCTT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000105105.4
3UTR CAA 72 bp	GGTTATCCTGAGTTAACCTATTTCAGAATTAAGACATaGTACCTGAGAGCACACAGAGGAATGTGGTACCCA	+
Preference number: 4 (lower is better) Translates to: GYPELTYFRIKT*YLRAHRGMWYP Trigger: TGGGTACCACATTCCTCTGTGTGCTCTCAGGTACAATGTCTTAATTCTGAAATAGGTTAACTCAGGATAACC 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000105105.4

---

If you would like us to post a table for your organism of interest, or have questions, please reach out to eerik at stanford dot edu or xjgao at stanford.edu