Pregenerated sensors for H3C15 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000081058

Ensembl transcript IDs: ENSMUST00000167403.4

Found 3 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type	Sensor	Details
3UTR-3UTR TCA 90 bp	GGTGATGTAATTATGAGCTGTAAGCTAGATCTCAGCCTTCAGCTACTTACAAAGCATTCAAACCTTCCTTaGAAGCAACCATTATGTAGA	+
Preference number: 2 (lower is better) Translates to: GDVIMSCKLDLSLQLLTKHSNLP*KQPLCR Trigger: TCTACATAATGGTTGCTTTCAAGGAAGGTTTGAATG...CTTTGTAAGTAGCTGAAGGCTGAGATCTAGCTTACAGCTCATAATTACATCACC 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000167403.4
3UTR CCA 72 bp	GCCTTCAGCTACTTACAAAGCCTTCTCTGCTCCAGCTaGGTAGGAACATTACATAGTATCCACCAAGCCCCA	+
Preference number: 3 (lower is better) Translates to: AFSYLQSLLCSS*VGTLHSIHQAP Trigger: TGGGGCTTGGTGGATACTATGTAATGTTCCTACCCAGCTGGAGCAGAGAAGGCTTTGTAAGTAGCTGAAGGC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000167403.4
3UTR CCA 72 bp	CATAACAGGTATAAGTCAGATACCAACCTAGAGCTATaGAGCGGGATAATGTGCGGACAAAGCTCTAAGCGA	+
Preference number: 3 (lower is better) Translates to: HNRYKSDTNLEL*SGIMCGQSSKR Trigger: TCGCTTAGAGCTTTGTCCGCACATTATCCCGCTCCATAGCTCTAGGTTGGTATCTGACTTATACCTGTTATG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000167403.4

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