Pregenerated sensors for H3C14 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000093769

Ensembl transcript IDs: ENSMUST00000176059.2, ENSMUST00000177796.2

Found 15 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type	Sensor	Details
3UTR CCA 90 bp	AGCACATTCTTAAGCGACTATAGGCAACTATTAAAAGAGGCTCGGTaGACAGTAAGCACCAGCCACTGCAGAAACCTAGAAGAATGCAAA	+
Preference number: 1 (lower is better) Translates to: STFLSDYRQLLKEAR*TVSTSHCRNLEECK Trigger: TTTGCATTCTTCTAGGTTTCTGCAGTGGCTGGTGCTTACTGTCCACCGAGCCTCTTTTAATAGTTGCCTATAGTCGCTTAAGAATGTGCT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000176059.2 ENSMUST00000177796.2
3UTR CCA 90 bp	CGAATTAAGACTGATGTTAGAAGAGGAATGCAGAGGTTGAGCACCTaGATAAGATATTTTAGTCACTGCGCTCGCAATTGCCCCCGAAAT	+
Preference number: 1 (lower is better) Translates to: RIKTDVRRGMQRLST*IRYFSHCARNCPRN Trigger: ATTTCGGGGGCAATTGCGAGCGCAGTGACTAAAATATCTTATCCAGGTGCTCAACCTCTGCATTCCTCTTCTAACATCAGTCTTAATTCG 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000176059.2 ENSMUST00000177796.2
3UTR GCA 90 bp	AGGCAACTATTAAAAGAGGCTCGGTGGACAGTAAGCACCAGCCACTaGAGAAACCTAGAAGAATGCAAAGGCAATTTAAGACAAAAAGCT	+
Preference number: 1 (lower is better) Translates to: RQLLKEARWTVSTSH*RNLEECKGNLRQKA Trigger: AGCTTTTTGTCTTAAATTGCCTTTGCATTCTTCTAGGTTTCTGCAGTGGCTGGTGCTTACTGTCCACCGAGCCTCTTTTAATAGTTGCCT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000176059.2 ENSMUST00000177796.2
3UTR-3UTR TCA 90 bp	ATCAGCCTCTTTTGGCCTCCTCAGGTACCAGGTAGCCATATGATACATACATATTTTAAGACAAAAAGCTaGATAGCTCTTTCCGGGAAG	+
Preference number: 2 (lower is better) Translates to: ISLFWPPQVPGSHMIHTYFKTKS*IALSGK Trigger: CTTCCCGGAAAGAGCTATTCAGCTTTTTGTCTTAAA...ATATGTATGTATCATATGGCTACCTGGTACCTGAGGAGGCCAAAAGAGGCTGAT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 2 transcripts: ENSMUST00000176059.2 ENSMUST00000177796.2
3UTR-3UTR TCA 90 bp	AAAGAAAAACGAATTAAGACTGATGTTAGAAGAGGAATGCAGAGGTTGAGCACCTTTAAGACAAAAAGCTaGATAGCTCTTTCCGGGAAG	+
Preference number: 2 (lower is better) Translates to: KEKRIKTDVRRGMQRLSTFKTKS*IALSGK Trigger: CTTCCCGGAAAGAGCTATTCAGCTTTTTGTCTTAAA...GGTGCTCAACCTCTGCATTCCTCTTCTAACATCAGTCTTAATTCGTTTTTCTTT 39% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 2 transcripts: ENSMUST00000176059.2 ENSMUST00000177796.2
3UTR CCA 72 bp	TTAAGCGACTATAGGCAACTATTAAAAGAGGCTCGGTaGACAGTAAGCACCAGCCACTGCAGAAACCTAGAA	+
Preference number: 3 (lower is better) Translates to: LSDYRQLLKEAR*TVSTSHCRNLE Trigger: TTCTAGGTTTCTGCAGTGGCTGGTGCTTACTGTCCACCGAGCCTCTTTTAATAGTTGCCTATAGTCGCTTAA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000176059.2 ENSMUST00000177796.2
3UTR GCA 72 bp	TTAAAAGAGGCTCGGTGGACAGTAAGCACCAGCCACTaGAGAAACCTAGAAGAATGCAAAGGCAATTTAAGA	+
Preference number: 3 (lower is better) Translates to: LKEARWTVSTSH*RNLEECKGNLR Trigger: TCTTAAATTGCCTTTGCATTCTTCTAGGTTTCTGCAGTGGCTGGTGCTTACTGTCCACCGAGCCTCTTTTAA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000176059.2 ENSMUST00000177796.2
3UTR CCA 72 bp	ACTGATGTTAGAAGAGGAATGCAGAGGTTGAGCACCTaGATAAGATATTTTAGTCACTGCGCTCGCAATTGC	+
Preference number: 3 (lower is better) Translates to: TDVRRGMQRLST*IRYFSHCARNC Trigger: GCAATTGCGAGCGCAGTGACTAAAATATCTTATCCAGGTGCTCAACCTCTGCATTCCTCTTCTAACATCAGT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000176059.2 ENSMUST00000177796.2
3UTR-3UTR CAA 90 bp	ATCAGCCTCTTTTGGCCTCCTCAGGTACCAGGTAGCCATATGATACATACATATAATCTTAGACCAGGGTaGTTGAGGGTGTTAACTAAG	+
Preference number: 3 (lower is better) Translates to: ISLFWPPQVPGSHMIHTYNLRPG*LRVLTK Trigger: CTTAGTTAACACCCTCAACAACCCTGGTCTAAGATT...ATATGTATGTATCATATGGCTACCTGGTACCTGAGGAGGCCAAAAGAGGCTGAT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000176059.2 ENSMUST00000177796.2
3UTR CCA 72 bp	GAACACGAGGATCTCCCAAGTAAACTATCAAAACATTaGAAGGTGGCTGTAAACATCTACTCCAAAAACATA	+
Preference number: 3 (lower is better) Translates to: EHEDLPSKLSKH*KVAVNIYSKNI Trigger: TATGTTTTTGGAGTAGATGTTTACAGCCACCTTCCAATGTTTTGATAGTTTACTTGGGAGATCCTCGTGTTC 39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000176059.2 ENSMUST00000177796.2
3UTR CCA 72 bp	AGTAAAGTGGATAATCTGAAATTAGGACAATTAGAATaGAACCAAAGGAACGTTGTTTGTAGGTCAGCCTTT	+
Preference number: 3 (lower is better) Translates to: SKVDNLKLGQLE*NQRNVVCRSAF Trigger: AAAGGCTGACCTACAAACAACGTTCCTTTGGTTCCATTCTAATTGTCCTAATTTCAGATTATCCACTTTACT 36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000176059.2 ENSMUST00000177796.2
3UTR CCA 72 bp	GACTTACATACCATCATCATAGTAATTAAATTTGAATaGAGTAACTCACCTGATAGCAGGCAGATAAGATAC	+
Preference number: 3 (lower is better) Translates to: DLHTIIIVIKFE*SNSPDSRQIRY Trigger: GTATCTTATCTGCCTGCTATCAGGTGAGTTACTCCATTCAAATTTAATTACTATGATGATGGTATGTAAGTC 35% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000176059.2 ENSMUST00000177796.2
CDS-3UTR TCA 90 bp	AATTCCCAGAACCCACATGGCATCTATAACTCCAGTTCCAGGGGATCCATCAGCGCGGAGACAGCGACTTaGAACTCCCGCGCTGCCGCG	+
Preference number: 4 (lower is better) Translates to: NSQNPHGIYNSSSRGSISAETAT*NSRAAA Trigger: CGCGGCAGCGCGGGAGTTTCAAGTCGCTGTCTCCGC...GCTGATGGATCCCCTGGAACTGGAGTTATAGATGCCATGTGGGTTCTGGGAATT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000177796.2
CDS-3UTR CCA 90 bp	AAAGAAAAACGAATTAAGACTGATGTTAGAAGAGGAATGCAGAGGTTGAGCACCGCTTCGTACGGGCCATaGCGAAGACGGAAGACACCC	+
Preference number: 4 (lower is better) Translates to: KEKRIKTDVRRGMQRLSTASYGP*RRRKTP Trigger: GGGTGTCTTCCGTCTTCGCCATGGCCCGTACGAAGC...GGTGCTCAACCTCTGCATTCCTCTTCTAACATCAGTCTTAATTCGTTTTTCTTT 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000177796.2
3UTR CAA 72 bp	AAAATGGCTGAAGAGATGGCTCAGCAAATAGCATCTTaGGTGAGGATCAGGTTTCAATTCCCAGAACCCACA	+
Preference number: 4 (lower is better) Translates to: KMAEEMAQQIAS*VRIRFQFPEPT Trigger: TGTGGGTTCTGGGAATTGAAACCTGATCCTCACCAAAGATGCTATTTGCTGAGCCATCTCTTCAGCCATTTT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000176059.2 ENSMUST00000177796.2