Pregenerated sensors for H2BW2 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000048155Ensembl transcript IDs: ENSMUST00000059808.5
Found 26 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR-3UTR GCA 90 bp | CTCATTTGCTGGAGATATTCCTGCTACAGCTCTCTTAGGAGAAGTGGTGGCTCTTGCTGGAGTTGTTCATaGTACAGCTCTCTTAGGAGA | + |
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Preference number: 2 (lower is better) Translates to: LICWRYSCYSSLRRSGGSCWSCS*YSSLRR Trigger: TCTCCTAAGAGAGCTGTAGCATGAACAACTCCAGCA...AGAGCCACCACTTCTCCTAAGAGAGCTGTAGCAGGAATATCTCCAGCAAATGAG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000059808.5 |
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| 3UTR-3UTR GCA 90 bp | GATTTTGTTTGGTTTAAAGTCAAAGTCACTCATTTGCTGGAGATATTCCTGCTATCAAAGTCACTCTTTTaGTGGAGTTGTTCATGCTAC | + |
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Preference number: 2 (lower is better) Translates to: DFVWFKVKVTHLLEIFLLSKSLF*WSCSCY Trigger: GTAGCATGAACAACTCCAGCAAAAGAGTGACTTTGA...TAGCAGGAATATCTCCAGCAAATGAGTGACTTTGACTTTAAACCAAACAAAATC 37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000059808.5 |
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| 3UTR-3UTR CAA 90 bp | ATTTGCTGGAGATATTCCTGCTACAGCTCTCTTAGGAGAAGTGGTGGCTCTGAAGTCAAAGTCACTCTTTaGCTGGAGTTGTTCATGCTA | + |
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Preference number: 3 (lower is better) Translates to: ICWRYSCYSSLRRSGGSEVKVTL*LELFML Trigger: TAGCATGAACAACTCCAGCAAAAGAGTGACTTTGAC...TTCAGAGCCACCACTTCTCCTAAGAGAGCTGTAGCAGGAATATCTCCAGCAAAT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000059808.5 |
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| 3UTR GCA 72 bp | TTAAAGTCAAAGTCACTCTTTTGCTGGAGTTGTTCATaGTACAGCTCTCTTAGGAGAAGTGGTGGCTCTGAA | + |
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Preference number: 3 (lower is better) Translates to: LKSKSLFCWSCS*YSSLRRSGGSE Trigger: TTCAGAGCCACCACTTCTCCTAAGAGAGCTGTAGCATGAACAACTCCAGCAAAAGAGTGACTTTGACTTTAA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000059808.5 |
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| CDS-3UTR CCA 90 bp | ATTTGCTGGAGATATTCCTGCTACAGCTCTCTTAGGAGAAGTGGTGGCTCTGAACCTGTTTCTCTTTCTTaGCCTTCTTCTCCGGCCCCC | + |
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Preference number: 4 (lower is better) Translates to: ICWRYSCYSSLRRSGGSEPVSLS*PSSPAP Trigger: GGGGGCCGGAGAAGAAGGCCAAGAAAGAGAAACAGG...TTCAGAGCCACCACTTCTCCTAAGAGAGCTGTAGCAGGAATATCTCCAGCAAAT 50% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000059808.5 |
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| CDS-3UTR GCA 90 bp | AAGTCACTCTTTTGCTGGAGTTGTTCATGCTACAGCTCTCTTAGGAGAAGTGGTACCTCAGGCTTCTCCTaGTCAGGAGTCTCTTGCTCA | + |
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Preference number: 4 (lower is better) Translates to: KSLFCWSCSCYSSLRRSGTSGFS*SGVSCS Trigger: TGAGCAAGAGACTCCTGAGCAGGAGAAGCCTGAGGT...ACCACTTCTCCTAAGAGAGCTGTAGCATGAACAACTCCAGCAAAAGAGTGACTT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000059808.5 |
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| CDS-3UTR TCA 90 bp | AGTCAAAGTCACTCATTTGCTGGAGATATTCCTGCTACAGCTCTCTTAGGAGAATACGCTCATCTTCCCTaGTGCTTTGGTGAAGTGAGC | + |
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Preference number: 4 (lower is better) Translates to: SQSHSFAGDIPATALLGEYAHLP*CFGEVS Trigger: GCTCACTTCACCAAAGCATCAGGGAAGATGAGCGTA...TTCTCCTAAGAGAGCTGTAGCAGGAATATCTCCAGCAAATGAGTGACTTTGACT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000059808.5 |
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| CDS-3UTR CCA 90 bp | TTTGCTGGAGATATTCCTGCTACAGCTCTCTTAGGAGAAGTGGTGGCTCTGAAACGGCTTCTCTTTCTCTaGCTTCTTCTTCGGCTTTTT | + |
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Preference number: 4 (lower is better) Translates to: FAGDIPATALLGEVVALKRLLFL*LLLRLF Trigger: AAAAAGCCGAAGAAGAAGCCAGAGAAAGAGAAGCCG...TTTCAGAGCCACCACTTCTCCTAAGAGAGCTGTAGCAGGAATATCTCCAGCAAA 46% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000059808.5 |
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| CDS-3UTR CCA 90 bp | CAAAGTCACTCTTTTGCTGGAGTTGTTCATGCTACAGCTCTCTTAGGAGAAGTGCCCGCTTGTCTTTCTTaGGTTTCTTCTCCAGCTTCT | + |
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Preference number: 4 (lower is better) Translates to: QSHSFAGVVHATALLGEVPACLS*VSSPAS Trigger: AGAAGCTGGAGAAGAAACCCAAGAAAGACAAGCGGG...CACTTCTCCTAAGAGAGCTGTAGCATGAACAACTCCAGCAAAAGAGTGACTTTG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000059808.5 |
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| CDS-3UTR CCA 90 bp | AGTCAAAGTCACTCTTTTGCTGGAGTTGTTCATGCTACAGCTCTCTTAGGAGAAAGTCGAATAGCGGTCTaGATCTCTCTGGAGTTGATA | + |
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Preference number: 4 (lower is better) Translates to: SQSHSFAGVVHATALLGESRIAV*ISLELI Trigger: TATCAACTCCAGAGAGATCCAGACCGCTATTCGACT...TTCTCCTAAGAGAGCTGTAGCATGAACAACTCCAGCAAAAGAGTGACTTTGACT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000059808.5 |
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| CDS-3UTR CCA 90 bp | CAAAGTCACTCTTTTGCTGGAGTTGTTCATGCTACAGCTCTCTTAGGAGAAGTGTTTCTCAGGCTTTCTTaGTTGTACCTGTTTTTCGGA | + |
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Preference number: 4 (lower is better) Translates to: QSHSFAGVVHATALLGEVFLRLS*LYLFFG Trigger: TCCGAAAAACAGGTACAACCAAGAAAGCCTGAGAAA...CACTTCTCCTAAGAGAGCTGTAGCATGAACAACTCCAGCAAAAGAGTGACTTTG 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000059808.5 |
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| CDS-3UTR GCA 90 bp | TTGGATTTTGTTTGGTTTAAAGTCAAAGTCACTCATTTGCTGGAGATATTCCTGGAAGCTGGCTTCGGATaGAATTCTTTCAAACATATC | + |
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Preference number: 4 (lower is better) Translates to: LDFVWFKVKVTHLLEIFLEAGFG*NSFKHI Trigger: GATATGTTTGAAAGAATTGCATCCGAAGCCAGCTTC...CAGGAATATCTCCAGCAAATGAGTGACTTTGACTTTAAACCAAACAAAATCCAA 37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000059808.5 |
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| CDS GCA 90 bp | GAGCGACGCCGCTGCACCTCAGGCTTCTCCTGCTCAGGAGTCTCTTaGTCACGGTTCTCTTGCTCGGGCTTCTTCTTCGGCTTCGCTTTC | + |
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Preference number: 5 (lower is better) Translates to: ERRRCTSGFSCSGVS*SRFSCSGFFFGFAF Trigger: GAAAGCGAAGCCGAAGAAGAAGCCCGAGCAAGAGAACCGTGAGCAAGAGACTCCTGAGCAGGAGAAGCCTGAGGTGCAGCGGCGTCGCTC 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000059808.5 |
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| CDS GCA 90 bp | ACCTCAGGCTTCTCCTGCTCAGGAGTCTCTTGCTCACGGTTCTCTTaGTCGGGCTTCTTCTTCGGCTTCGCTTTCTCCCGCTTGTCTTTC | + |
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Preference number: 5 (lower is better) Translates to: TSGFSCSGVSCSRFS*SGFFFGFAFSRLSF Trigger: GAAAGACAAGCGGGAGAAAGCGAAGCCGAAGAAGAAGCCCGAGCAAGAGAACCGTGAGCAAGAGACTCCTGAGCAGGAGAAGCCTGAGGT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000059808.5 |
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| CDS-3UTR CAA 90 bp | AGTCAAAGTCACTCATTTGCTGGAGATATTCCTGCTACAGCTCTCTTAGGAGAATCCTGTTTCTCTTTCTaGGCCTTCTTCTCCGGCCCC | + |
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Preference number: 5 (lower is better) Translates to: SQSHSFAGDIPATALLGESCFSF*AFFSGP Trigger: GGGGCCGGAGAAGAAGGCCAAGAAAGAGAAACAGGA...TTCTCCTAAGAGAGCTGTAGCAGGAATATCTCCAGCAAATGAGTGACTTTGACT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000059808.5 |
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| CDS-3UTR CAA 90 bp | TTTGCTGGAGATATTCCTGCTACAGCTCTCTTAGGAGAAGTGGTGGCTCTGAAATCCCGCTTGTCTTTCTaGGGTTTCTTCTCCAGCTTC | + |
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Preference number: 5 (lower is better) Translates to: FAGDIPATALLGEVVALKSRLSF*GFFSSF Trigger: GAAGCTGGAGAAGAAACCCAAGAAAGACAAGCGGGA...TTTCAGAGCCACCACTTCTCCTAAGAGAGCTGTAGCAGGAATATCTCCAGCAAA 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000059808.5 |
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| CDS-3UTR CAA 90 bp | AAGTCACTCTTTTGCTGGAGTTGTTCATGCTACAGCTCTCTTAGGAGAAGTGGTTTCGCTTTCTCCCGCTaGTCTTTCTTGGGTTTCTTC | + |
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Preference number: 5 (lower is better) Translates to: KSLFCWSCSCYSSLRRSGFAFSR*SFLGFF Trigger: GAAGAAACCCAAGAAAGACAAGCGGGAGAAAGCGAA...ACCACTTCTCCTAAGAGAGCTGTAGCATGAACAACTCCAGCAAAAGAGTGACTT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000059808.5 |
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| CDS-3UTR CAA 90 bp | AAGTCACTCTTTTGCTGGAGTTGTTCATGCTACAGCTCTCTTAGGAGAAGTGGTTGGATCTCTCTGGAGTaGATAGTAGAGTTTCTGGCT | + |
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Preference number: 5 (lower is better) Translates to: KSLFCWSCSCYSSLRRSGWISLE*IVEFLA Trigger: AGCCAGAAACTCTACTATCAACTCCAGAGAGATCCA...ACCACTTCTCCTAAGAGAGCTGTAGCATGAACAACTCCAGCAAAAGAGTGACTT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000059808.5 |
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| CDS GCA 72 bp | CGCTGCACCTCAGGCTTCTCCTGCTCAGGAGTCTCTTaGTCACGGTTCTCTTGCTCGGGCTTCTTCTTCGGC | + |
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Preference number: 6 (lower is better) Translates to: RCTSGFSCSGVS*SRFSCSGFFFG Trigger: GCCGAAGAAGAAGCCCGAGCAAGAGAACCGTGAGCAAGAGACTCCTGAGCAGGAGAAGCCTGAGGTGCAGCG 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000059808.5 |
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| CDS CAA 72 bp | CCGCTGCACCTCAGGCTTCTCCTGCTCAGGAGTCTCTaGCTCACGGTTCTCTTGCTCGGGCTTCTTCTTCGG | + |
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Preference number: 6 (lower is better) Translates to: PLHLRLLLLRSL*LTVLLLGLLLR Trigger: CCGAAGAAGAAGCCCGAGCAAGAGAACCGTGAGCAAGAGACTCCTGAGCAGGAGAAGCCTGAGGTGCAGCGG 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000059808.5 |
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| CDS GCA 72 bp | TTCTCCTGCTCAGGAGTCTCTTGCTCACGGTTCTCTTaGTCGGGCTTCTTCTTCGGCTTCGCTTTCTCCCGC | + |
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Preference number: 6 (lower is better) Translates to: FSCSGVSCSRFS*SGFFFGFAFSR Trigger: GCGGGAGAAAGCGAAGCCGAAGAAGAAGCCCGAGCAAGAGAACCGTGAGCAAGAGACTCCTGAGCAGGAGAA 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000059808.5 |
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| CDS CAA 72 bp | CTTCTCCTGCTCAGGAGTCTCTTGCTCACGGTTCTCTaGCTCGGGCTTCTTCTTCGGCTTCGCTTTCTCCCG | + |
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Preference number: 6 (lower is better) Translates to: LLLLRSLLLTVL*LGLLLRLRFLP Trigger: CGGGAGAAAGCGAAGCCGAAGAAGAAGCCCGAGCAAGAGAACCGTGAGCAAGAGACTCCTGAGCAGGAGAAG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000059808.5 |
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| CDS CAA 90 bp | CACCTCAGGCTTCTCCTGCTCAGGAGTCTCTTGCTCACGGTTCTCTaGCTCGGGCTTCTTCTTCGGCTTCGCTTTCTCCCGCTTGTCTTT | + |
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Preference number: 6 (lower is better) Translates to: HLRLLLLRSLLLTVL*LGLLLRLRFLPLVF Trigger: AAAGACAAGCGGGAGAAAGCGAAGCCGAAGAAGAAGCCCGAGCAAGAGAACCGTGAGCAAGAGACTCCTGAGCAGGAGAAGCCTGAGGTG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000059808.5 |
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| CDS CCA 72 bp | CAGAGCTCGCCAGGAAGCAGAAGTCGAATAGCGGTCTaGATCTCTCTGGAGTTGATAGTAGAGTTTCTGGCT | + |
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Preference number: 6 (lower is better) Translates to: QSSPGSRSRIAV*ISLELIVEFLA Trigger: AGCCAGAAACTCTACTATCAACTCCAGAGAGATCCAGACCGCTATTCGACTTCTGCTTCCTGGCGAGCTCTG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000059808.5 |
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| CDS CAA 72 bp | CTGGATCTCTCTGGAGTTGATAGTAGAGTTTCTGGCTaGACGCGCCAAGAAGCTGGCTTCGGATGCAATTCT | + |
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Preference number: 6 (lower is better) Translates to: LDLSGVDSRVSG*TRQEAGFGCNS Trigger: AGAATTGCATCCGAAGCCAGCTTCTTGGCGCGTCAAGCCAGAAACTCTACTATCAACTCCAGAGAGATCCAG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000059808.5 |
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| CDS TCA 72 bp | TTCGGATGCAATTCTTTCAAACATATCCTTCACGAATaGATCCAGGATGTTCACAGACCGCTGCGAGAGGGA | + |
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Preference number: 6 (lower is better) Translates to: FGCNSFKHILHE*IQDVHRPLREG Trigger: TCCCTCTCGCAGCGGTCTGTGAACATCCTGGATTCATTCGTGAAGGATATGTTTGAAAGAATTGCATCCGAA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000059808.5 |
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