Pregenerated sensors for H2BU2 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000056895

Ensembl transcript IDs: ENSMUST00000078267.5

Found 7 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type	Sensor	Details
3UTR-3UTR CCA 90 bp	ACCATTATGAACAAGAGGTATTATCTCAGGATCCCAAGGTCCAGTACAACACCCAAAGAGCCTTTGGGTTaGGGGCGCTCTCGCCGCGCC	+
Preference number: 2 (lower is better) Translates to: TIMNKRYYLRIPRSSTTPKEPLG*GRSRRA Trigger: GGCGCGGCGAGAGCGCCCCCAACCCAAAGGCTCTTT...GGGTGTTGTACTGGACCTTGGGATCCTGAGATAATACCTCTTGTTCATAATGGT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000078267.5
3UTR-3UTR TCA 90 bp	TACCATTATGAACAAGAGGTATTATCTCAGGATCCCAAGGTCCAGTACAACACCTGTTCATCAAGTGAATaGCAATCTTATTCAGGTAGC	+
Preference number: 2 (lower is better) Translates to: YHYEQEVLSQDPKVQYNTCSSSE*QSYSGS Trigger: GCTACCTGAATAAGATTGTCATTCACTTGATGAACA...GGTGTTGTACTGGACCTTGGGATCCTGAGATAATACCTCTTGTTCATAATGGTA 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000078267.5
3UTR-3UTR CAA 90 bp	TACCATTATGAACAAGAGGTATTATCTCAGGATCCCAAGGTCCAGTACAACACCAAAAGAGCCTTTGGGTaGGGGGCGCTCTCGCCGCGC	+
Preference number: 3 (lower is better) Translates to: YHYEQEVLSQDPKVQYNTKRAFG*GALSPR Trigger: GCGCGGCGAGAGCGCCCCCAACCCAAAGGCTCTTTT...GGTGTTGTACTGGACCTTGGGATCCTGAGATAATACCTCTTGTTCATAATGGTA 52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000078267.5
3UTR TCA 72 bp	GTGGCCAAAATTGAACCAAATTTATTAATACCATTATaGACAAGAGGTATTATCTCAGGATCCCAAGGTCCA	+
Preference number: 3 (lower is better) Translates to: VAKIEPNLLIPL*TRGIISGSQGP Trigger: TGGACCTTGGGATCCTGAGATAATACCTCTTGTTCATAATGGTATTAATAAATTTGGTTCAATTTTGGCCAC 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000078267.5
CDS-3UTR CCA 90 bp	ACCATTATGAACAAGAGGTATTATCTCAGGATCCCAAGGTCCAGTACAACACCCTCTTCGGGGCGGGAGTaGAGCGGGAAGGCTCCGGCA	+
Preference number: 4 (lower is better) Translates to: TIMNKRYYLRIPRSSTTPSSGRE*SGKAPA Trigger: TGCCGGAGCCTTCCCGCTCCACTCCCGCCCCGAAGA...GGGTGTTGTACTGGACCTTGGGATCCTGAGATAATACCTCTTGTTCATAATGGT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000078267.5
CDS-3UTR TCA 90 bp	ACCATTATGAACAAGAGGTATTATCTCAGGATCCCAAGGTCCAGTACAACACCCTTGCCATCCTTTTTCTaGGCCTTGGTGATGGCTTTC	+
Preference number: 4 (lower is better) Translates to: TIMNKRYYLRIPRSSTTPLPSFF*ALVMAF Trigger: GAAAGCCATCACCAAGGCTCAGAAAAAGGATGGCAA...GGGTGTTGTACTGGACCTTGGGATCCTGAGATAATACCTCTTGTTCATAATGGT 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000078267.5
CDS-3UTR GCA 90 bp	TACCATTATGAACAAGAGGTATTATCTCAGGATCCCAAGGTCCAGTACAACACCCCCGTTTGCGTTTCTTaGCATCCTTTTTCTGAGCCT	+
Preference number: 4 (lower is better) Translates to: YHYEQEVLSQDPKVQYNTPVCVS*HPFSEP Trigger: AGGCTCAGAAAAAGGATGGCAAGAAACGCAAACGGG...GGTGTTGTACTGGACCTTGGGATCCTGAGATAATACCTCTTGTTCATAATGGTA 44% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000078267.5

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