Pregenerated sensors for H2BL1 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000045022

Ensembl transcript IDs: ENSMUST00000054425.7

Found 6 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type	Sensor	Details
CDS-3UTR TCA 90 bp	GTTATGGCCAATTTCATTTACTTTCCCCAAGTTTCAATTAGGCTTGAACATGGAGGGTACAGCGCTTTCTaGGGAACATCTGCTGGCAGG	+
Preference number: 4 (lower is better) Translates to: VMANFIYFPQVSIRLEHGGYSAF*GTSAGR Trigger: CCTGCCAGCAGATGTTCCTCAGAAAGCGCTGTACCC...TCCATGTTCAAGCCTAATTGAAACTTGGGGAAAGTAAATGAAATTGGCCATAAC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000054425.7
CDS-3UTR CCA 90 bp	GTTATGGCCAATTTCATTTACTTTCCCCAAGTTTCAATTAGGCTTGAACATGGAAGATGCACTGCCTGCTaGATATCTCCTGGGGTGAGG	+
Preference number: 4 (lower is better) Translates to: VMANFIYFPQVSIRLEHGRCTAC*ISPGVR Trigger: CCTCACCCCAGGAGATATCCAGCAGGCAGTGCATCT...TCCATGTTCAAGCCTAATTGAAACTTGGGGAAAGTAAATGAAATTGGCCATAAC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000054425.7
CDS-3UTR GCA 90 bp	GTTATGGCCAATTTCATTTACTTTCCCCAAGTTTCAATTAGGCTTGAACATGGATTCGGCAACAGCAGATaGACTGCCTGCTGGATATCT	+
Preference number: 4 (lower is better) Translates to: VMANFIYFPQVSIRLEHGFGNSR*TACWIS Trigger: AGATATCCAGCAGGCAGTGCATCTGCTGTTGCCGAA...TCCATGTTCAAGCCTAATTGAAACTTGGGGAAAGTAAATGAAATTGGCCATAAC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000054425.7
CDS CCA 90 bp	GCAAGCGTAGCCAGCTTCTTCGGCAACAGCAGATGCACTGCCTGCTaGATATCTCCTGGGGTGAGGGTACAGCGCTTTCTGAGGAACATC	+
Preference number: 5 (lower is better) Translates to: ASVASFFGNSRCTAC*ISPGVRVQRFLRNI Trigger: GATGTTCCTCAGAAAGCGCTGTACCCTCACCCCAGGAGATATCCAGCAGGCAGTGCATCTGCTGTTGCCGAAGAAGCTGGCTACGCTTGC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000054425.7
CDS CCA 72 bp	GCCAGCTTCTTCGGCAACAGCAGATGCACTGCCTGCTaGATATCTCCTGGGGTGAGGGTACAGCGCTTTCTG	+
Preference number: 6 (lower is better) Translates to: ASFFGNSRCTAC*ISPGVRVQRFL Trigger: CAGAAAGCGCTGTACCCTCACCCCAGGAGATATCCAGCAGGCAGTGCATCTGCTGTTGCCGAAGAAGCTGGC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000054425.7
CDS TCA 72 bp	ATTGATGAGGATGTTCATGATGTCCACAGAATAGGATaGTATACCCCTGTTAGGGACAACTTCCTTCAGGAC	+
Preference number: 6 (lower is better) Translates to: IDEDVHDVHRIG*YTPVRDNFLQD Trigger: GTCCTGAAGGAAGTTGTCCCTAACAGGGGTATATCATCCTATTCTGTGGACATCATGAACATCCTCATCAAT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000054425.7