Pregenerated sensors for H2BC9 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000114456Ensembl transcript IDs: ENSMUST00000224359.2
Found 38 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | CAAGGAAGTCAGGATTGGAACTCAAGCAGGTCAGAAAGCAGGAGCTaGTGCAGAGGCCACGGAGGGATGTTCTTACTGGCTTGCTTCTCC | + |
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Preference number: 1 (lower is better) Translates to: QGSQDWNSSRSESRS*CRGHGGMFLLACFS Trigger: GGAGAAGCAAGCCAGTAAGAACATCCCTCCGTGGCCTCTGCATCAGCTCCTGCTTTCTGACCTGCTTGAGTTCCAATCCTGACTTCCTTG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000224359.2 |
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| 3UTR GCA 90 bp | CGGAGGGATGTTCTTACTGGCTTGCTTCTCCTGGCTTGCTCAGCCTaGTCTCTTATAGAACTAAGACTACCAGCCCAGAGATGGTCCCAC | + |
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Preference number: 1 (lower is better) Translates to: RRDVLTGLLLLACSA*SLIELRLPAQRWSH Trigger: GTGGGACCATCTCTGGGCTGGTAGTCTTAGTTCTATAAGAGAGCAGGCTGAGCAAGCCAGGAGAAGCAAGCCAGTAAGAACATCCCTCCG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000224359.2 |
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| 3UTR CCA 90 bp | CAGAAAGCAGGAGCTGATGCAGAGGCCACGGAGGGATGTTCTTACTaGCTTGCTTCTCCTGGCTTGCTCAGCCTGCTCTCTTATAGAACT | + |
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Preference number: 1 (lower is better) Translates to: QKAGADAEATEGCSY*LASPGLLSLLSYRT Trigger: AGTTCTATAAGAGAGCAGGCTGAGCAAGCCAGGAGAAGCAAGCCAGTAAGAACATCCCTCCGTGGCCTCTGCATCAGCTCCTGCTTTCTG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000224359.2 |
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| 3UTR GCA 90 bp | AGCAAGTTGGGGAGGAAACCGCTTATCCAGCTTACAATTCCACATTaGTGTTCATCACCAAGGAAGTCAGGATTGGAACTCAAGCAGGTC | + |
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Preference number: 1 (lower is better) Translates to: SKLGRKPLIQLTIPH*CSSPRKSGLELKQV Trigger: GACCTGCTTGAGTTCCAATCCTGACTTCCTTGGTGATGAACAGCAATGTGGAATTGTAAGCTGGATAAGCGGTTTCCTCCCCAACTTGCT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000224359.2 |
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| 3UTR TCA 90 bp | GAGATGGTCCCACCCACAAGGGGCCTTTCCTCCTTGATTACTAATTaGGAAAATGCCTTACAGTTGGATCTCATGGAGGCATTTCCTCAA | + |
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Preference number: 1 (lower is better) Translates to: EMVPPTRGLSSLITN*ENALQLDLMEAFPQ Trigger: TTGAGGAAATGCCTCCATGAGATCCAACTGTAAGGCATTTTCTCAATTAGTAATCAAGGAGGAAAGGCCCCTTGTGGGTGGGACCATCTC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000224359.2 |
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| 3UTR TCA 90 bp | GAGAAAATGCCTTACAGTTGGATCTCATGGAGGCATTTCCTCAACTaGAGCTCCTTTCTCTGTGGTAACTCCAGCTGTGTCAAGTTGAGA | + |
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Preference number: 1 (lower is better) Translates to: EKMPYSWISWRHFLN*SSFLCGNSSCVKLR Trigger: TCTCAACTTGACACAGCTGGAGTTACCACAGAGAAAGGAGCTTCAGTTGAGGAAATGCCTCCATGAGATCCAACTGTAAGGCATTTTCTC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000224359.2 |
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| 3UTR TCA 90 bp | TCAACTGAAGCTCCTTTCTCTGTGGTAACTCCAGCTGTGTCAAGTTaGGACAAAACTAGCCAGTACAGTGGCAAACCATGCAGATTTACT | + |
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Preference number: 1 (lower is better) Translates to: STEAPFSVVTPAVSS*DKTSQYSGKPCRFT Trigger: AGTAAATCTGCATGGTTTGCCACTGTACTGGCTAGTTTTGTCTCAACTTGACACAGCTGGAGTTACCACAGAGAAAGGAGCTTCAGTTGA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000224359.2 |
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| 3UTR CCA 90 bp | TCAGGGTTTCTATTCCTGCACAAACATCATGACCAAGAAGCAAGTTaGGGAGGAAACCGCTTATCCAGCTTACAATTCCACATTGCTGTT | + |
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Preference number: 1 (lower is better) Translates to: SGFLFLHKHHDQEAS*GGNRLSSLQFHIAV Trigger: AACAGCAATGTGGAATTGTAAGCTGGATAAGCGGTTTCCTCCCCAACTTGCTTCTTGGTCATGATGTTTGTGCAGGAATAGAAACCCTGA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000224359.2 |
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| 3UTR TCA 90 bp | GTACAGTGGCAAACCATGCAGATTTACTTCCCTGAACTGGAAAACTaGAACATTTGGGTATTTGGCCTTTTGAAACTCAAGGACTGGACC | + |
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Preference number: 1 (lower is better) Translates to: VQWQTMQIYFPELEN*NIWVFGLLKLKDWT Trigger: GGTCCAGTCCTTGAGTTTCAAAAGGCCAAATACCCAAATGTTTCAGTTTTCCAGTTCAGGGAAGTAAATCTGCATGGTTTGCCACTGTAC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000224359.2 |
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| 3UTR-3UTR TCA 90 bp | CTGCTCTCTTATAGAACTAAGACTACCAGCCCAGAGATGGTCCCACCCACAAGGTGGACCAGACAGAACTaGTGGGCAATGTCTATCTTT | + |
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Preference number: 2 (lower is better) Translates to: LLSYRTKTTSPEMVPPTRWTRQN*WAMSIF Trigger: AAAGATAGACATTGCCCATCAGTTCTGTCTGGTCCA...CCTTGTGGGTGGGACCATCTCTGGGCTGGTAGTCTTAGTTCTATAAGAGAGCAG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000224359.2 |
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| 3UTR-3UTR CCA 90 bp | GTGGTTGGCAGCCATATGGCTACTTACATCGTGGTAAAGTCACCAGCTAAGATGGACCAAGAAGCAAGTTaGGGAGGAAACCGCTTATCC | + |
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Preference number: 2 (lower is better) Translates to: VVGSHMATYIVVKSPAKMDQEAS*GGNRLS Trigger: GGATAAGCGGTTTCCTCCCCAACTTGCTTCTTGGTC...CATCTTAGCTGGTGACTTTACCACGATGTAAGTAGCCATATGGCTGCCAACCAC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000224359.2 |
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| 3UTR-3UTR TCA 90 bp | TCACCAAGGAAGTCAGGATTGGAACTCAAGCAGGTCAGAAAGCAGGAGCTGATGGCAGATTTACTTCCCTaGACTGGAAAACTGAAACAT | + |
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Preference number: 2 (lower is better) Translates to: SPRKSGLELKQVRKQELMADLLP*TGKLKH Trigger: ATGTTTCAGTTTTCCAGTTCAGGGAAGTAAATCTGC...CATCAGCTCCTGCTTTCTGACCTGCTTGAGTTCCAATCCTGACTTCCTTGGTGA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000224359.2 |
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| 3UTR-3UTR CCA 90 bp | TCACCAAGGAAGTCAGGATTGGAACTCAAGCAGGTCAGAAAGCAGGAGCTGATGTTTACTTCCCTGAACTaGAAAACTGAAACATTTGGG | + |
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Preference number: 2 (lower is better) Translates to: SPRKSGLELKQVRKQELMFTSLN*KTETFG Trigger: CCCAAATGTTTCAGTTTTCCAGTTCAGGGAAGTAAA...CATCAGCTCCTGCTTTCTGACCTGCTTGAGTTCCAATCCTGACTTCCTTGGTGA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000224359.2 |
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| 3UTR-3UTR TCA 90 bp | AGTTTTACCCACCTAATCCCTAAACAAAATCATACCCAGGCTATTTGGAGTTTCCCTGCACAAACATCATaGCCAAGAAGCAAGTTGGGG | + |
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Preference number: 2 (lower is better) Translates to: SFTHLIPKQNHTQAIWSFPAQTS*PRSKLG Trigger: CCCCAACTTGCTTCTTGGTCATGATGTTTGTGCAGG...GAAACTCCAAATAGCCTGGGTATGATTTTGTTTAGGGATTAGGTGGGTAAAACT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000224359.2 |
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| 3UTR-3UTR CCA 90 bp | TCACCAAGGAAGTCAGGATTGGAACTCAAGCAGGTCAGAAAGCAGGAGCTGATGAAACATTTGGGTATTTaGCCTTTTGAAACTCAAGGA | + |
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Preference number: 2 (lower is better) Translates to: SPRKSGLELKQVRKQELMKHLGI*PFETQG Trigger: TCCTTGAGTTTCAAAAGGCCAAATACCCAAATGTTT...CATCAGCTCCTGCTTTCTGACCTGCTTGAGTTCCAATCCTGACTTCCTTGGTGA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000224359.2 |
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| 3UTR-3UTR CCA 90 bp | AGTTTTACCCACCTAATCCCTAAACAAAATCATACCCAGGCTATTTGGAGTTTCGAGGGATGTTCTTACTaGCTTGCTTCTCCTGGCTTG | + |
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Preference number: 2 (lower is better) Translates to: SFTHLIPKQNHTQAIWSFEGCSY*LASPGL Trigger: CAAGCCAGGAGAAGCAAGCCAGTAAGAACATCCCTC...GAAACTCCAAATAGCCTGGGTATGATTTTGTTTAGGGATTAGGTGGGTAAAACT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000224359.2 |
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| 3UTR-3UTR GCA 90 bp | AGTTTTACCCACCTAATCCCTAAACAAAATCATACCCAGGCTATTTGGAGTTTCTTGCTTCTCCTGGCTTaGTCAGCCTGCTCTCTTATA | + |
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Preference number: 2 (lower is better) Translates to: SFTHLIPKQNHTQAIWSFLLLLA*SACSLI Trigger: TATAAGAGAGCAGGCTGAGCAAGCCAGGAGAAGCAA...GAAACTCCAAATAGCCTGGGTATGATTTTGTTTAGGGATTAGGTGGGTAAAACT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000224359.2 |
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| 3UTR-3UTR GCA 90 bp | AGTTTTACCCACCTAATCCCTAAACAAAATCATACCCAGGCTATTTGGAGTTTCATGTTCTTACTGGCTTaGTTCTCCTGGCTTGCTCAG | + |
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Preference number: 2 (lower is better) Translates to: SFTHLIPKQNHTQAIWSFMFLLA*FSWLAQ Trigger: CTGAGCAAGCCAGGAGAAGCAAGCCAGTAAGAACAT...GAAACTCCAAATAGCCTGGGTATGATTTTGTTTAGGGATTAGGTGGGTAAAACT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000224359.2 |
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| 3UTR-3UTR TCA 90 bp | TATTCAGAAATACAGGTTAGTGGCTGTTTTAGTCAGGGTTTCTATTCCTGCACAACACAATCCTGCAGATaGAGTCAGTTATTTTCCCGG | + |
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Preference number: 2 (lower is better) Translates to: YSEIQVSGCFSQGFYSCTTQSCR*SQLFSR Trigger: CCGGGAAAATAACTGACTTCATCTGCAGGATTGTGT...TGTGCAGGAATAGAAACCCTGACTAAAACAGCCACTAACCTGTATTTCTGAATA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000224359.2 |
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| 3UTR-3UTR TCA 90 bp | AGTTTTACCCACCTAATCCCTAAACAAAATCATACCCAGGCTATTTGGAGTTTCCCTGAACTGGAAAACTaGAACATTTGGGTATTTGGC | + |
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Preference number: 2 (lower is better) Translates to: SFTHLIPKQNHTQAIWSFPELEN*NIWVFG Trigger: GCCAAATACCCAAATGTTTCAGTTTTCCAGTTCAGG...GAAACTCCAAATAGCCTGGGTATGATTTTGTTTAGGGATTAGGTGGGTAAAACT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000224359.2 |
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| 3UTR-3UTR GCA 90 bp | AGTTTTACCCACCTAATCCCTAAACAAAATCATACCCAGGCTATTTGGAGTTTCTACAGTGGCAAACCATaGAGATTTACTTCCCTGAAC | + |
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Preference number: 2 (lower is better) Translates to: SFTHLIPKQNHTQAIWSFYSGKP*RFTSLN Trigger: GTTCAGGGAAGTAAATCTGCATGGTTTGCCACTGTA...GAAACTCCAAATAGCCTGGGTATGATTTTGTTTAGGGATTAGGTGGGTAAAACT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000224359.2 |
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| 3UTR-3UTR TCA 90 bp | TCCCTAAACAAAATCATACCCAGGCTATTTGGAGTTTCAGTTTTAAACATTCCAGGGGCCTTTCCTCCTTaGTTACTAATTGAGAAAATG | + |
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Preference number: 2 (lower is better) Translates to: SLNKIIPRLFGVSVLNIPGAFPP*LLIEKM Trigger: CATTTTCTCAATTAGTAATCAAGGAGGAAAGGCCCC...TGGAATGTTTAAAACTGAAACTCCAAATAGCCTGGGTATGATTTTGTTTAGGGA 38% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt. Matches the following 1 transcripts: ENSMUST00000224359.2 |
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| 3UTR CCA 72 bp | GGAGCTGATGCAGAGGCCACGGAGGGATGTTCTTACTaGCTTGCTTCTCCTGGCTTGCTCAGCCTGCTCTCT | + |
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Preference number: 3 (lower is better) Translates to: GADAEATEGCSY*LASPGLLSLLS Trigger: AGAGAGCAGGCTGAGCAAGCCAGGAGAAGCAAGCCAGTAAGAACATCCCTCCGTGGCCTCTGCATCAGCTCC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000224359.2 |
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| 3UTR-3UTR CAA 90 bp | CTGCTCTCTTATAGAACTAAGACTACCAGCCCAGAGATGGTCCCACCCACAAGGTGGGTATTTGGCCTTTaGAAACTCAAGGACTGGACC | + |
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Preference number: 3 (lower is better) Translates to: LLSYRTKTTSPEMVPPTRWVFGL*KLKDWT Trigger: GGTCCAGTCCTTGAGTTTCAAAAGGCCAAATACCCA...CCTTGTGGGTGGGACCATCTCTGGGCTGGTAGTCTTAGTTCTATAAGAGAGCAG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000224359.2 |
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| 3UTR GCA 72 bp | GTTCTTACTGGCTTGCTTCTCCTGGCTTGCTCAGCCTaGTCTCTTATAGAACTAAGACTACCAGCCCAGAGA | + |
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Preference number: 3 (lower is better) Translates to: VLTGLLLLACSA*SLIELRLPAQR Trigger: TCTCTGGGCTGGTAGTCTTAGTTCTATAAGAGAGCAGGCTGAGCAAGCCAGGAGAAGCAAGCCAGTAAGAAC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000224359.2 |
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| 3UTR GCA 72 bp | CGGAGGGATGTTCTTACTGGCTTGCTTCTCCTGGCTTaGTCAGCCTGCTCTCTTATAGAACTAAGACTACCA | + |
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Preference number: 3 (lower is better) Translates to: RRDVLTGLLLLA*SACSLIELRLP Trigger: TGGTAGTCTTAGTTCTATAAGAGAGCAGGCTGAGCAAGCCAGGAGAAGCAAGCCAGTAAGAACATCCCTCCG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000224359.2 |
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| 3UTR TCA 72 bp | GCTCCTTTCTCTGTGGTAACTCCAGCTGTGTCAAGTTaGGACAAAACTAGCCAGTACAGTGGCAAACCATGC | + |
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Preference number: 3 (lower is better) Translates to: APFSVVTPAVSS*DKTSQYSGKPC Trigger: GCATGGTTTGCCACTGTACTGGCTAGTTTTGTCTCAACTTGACACAGCTGGAGTTACCACAGAGAAAGGAGC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000224359.2 |
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| 3UTR GCA 72 bp | GGGAGGAAACCGCTTATCCAGCTTACAATTCCACATTaGTGTTCATCACCAAGGAAGTCAGGATTGGAACTC | + |
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Preference number: 3 (lower is better) Translates to: GRKPLIQLTIPH*CSSPRKSGLEL Trigger: GAGTTCCAATCCTGACTTCCTTGGTGATGAACAGCAATGTGGAATTGTAAGCTGGATAAGCGGTTTCCTCCC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000224359.2 |
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| 3UTR GCA 72 bp | CAGGTTAGTGGCTGTTTTAGTCAGGGTTTCTATTCCTaGACAAACATCATGACCAAGAAGCAAGTTGGGGAG | + |
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Preference number: 3 (lower is better) Translates to: QVSGCFSQGFYS*TNIMTKKQVGE Trigger: CTCCCCAACTTGCTTCTTGGTCATGATGTTTGTGCAGGAATAGAAACCCTGACTAAAACAGCCACTAACCTG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000224359.2 |
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| 3UTR CCA 72 bp | CTATTCCTGCACAAACATCATGACCAAGAAGCAAGTTaGGGAGGAAACCGCTTATCCAGCTTACAATTCCAC | + |
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Preference number: 3 (lower is better) Translates to: LFLHKHHDQEAS*GGNRLSSLQFH Trigger: GTGGAATTGTAAGCTGGATAAGCGGTTTCCTCCCCAACTTGCTTCTTGGTCATGATGTTTGTGCAGGAATAG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000224359.2 |
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| 3UTR-3UTR CAA 90 bp | AGCCATATGGCTACTTACATCGTGGTAAAGTCACCAGCTAAGATGGAGAGTCACGAAAATGCCTTACAGTaGGATCTCATGGAGGCATTT | + |
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Preference number: 3 (lower is better) Translates to: SHMATYIVVKSPAKMESHENALQ*DLMEAF Trigger: AAATGCCTCCATGAGATCCAACTGTAAGGCATTTTC...GTGACTCTCCATCTTAGCTGGTGACTTTACCACGATGTAAGTAGCCATATGGCT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000224359.2 |
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| 3UTR-3UTR CAA 90 bp | GTGGTTGGCAGCCATATGGCTACTTACATCGTGGTAAAGTCACCAGCTAAGATGGGAAAACTGAAACATTaGGGTATTTGGCCTTTTGAA | + |
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Preference number: 3 (lower is better) Translates to: VVGSHMATYIVVKSPAKMGKLKH*GIWPFE Trigger: TTCAAAAGGCCAAATACCCAAATGTTTCAGTTTTCC...CATCTTAGCTGGTGACTTTACCACGATGTAAGTAGCCATATGGCTGCCAACCAC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000224359.2 |
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| 3UTR-3UTR CAA 90 bp | TATTCAGAAATACAGGTTAGTGGCTGTTTTAGTCAGGGTTTCTATTCCTGCACAGATGTTCTTACTGGCTaGCTTCTCCTGGCTTGCTCA | + |
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Preference number: 3 (lower is better) Translates to: YSEIQVSGCFSQGFYSCTDVLTG*LLLACS Trigger: TGAGCAAGCCAGGAGAAGCAAGCCAGTAAGAACATC...TGTGCAGGAATAGAAACCCTGACTAAAACAGCCACTAACCTGTATTTCTGAATA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000224359.2 |
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| 3UTR-3UTR CAA 90 bp | AGTTTTACCCACCTAATCCCTAAACAAAATCATACCCAGGCTATTTGGAGTTTCCCAAGGAAGTCAGGATaGGAACTCAAGCAGGTCAGA | + |
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Preference number: 3 (lower is better) Translates to: SFTHLIPKQNHTQAIWSFPRKSG*ELKQVR Trigger: TCTGACCTGCTTGAGTTCCAATCCTGACTTCCTTGG...GAAACTCCAAATAGCCTGGGTATGATTTTGTTTAGGGATTAGGTGGGTAAAACT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000224359.2 |
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| 3UTR CCA 72 bp | ACATGGCATGTACATTTAAATCTTAGTAAAGGTGGTTaGCAGCCATATGGCTACTTACATCGTGGTAAAGTC | + |
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Preference number: 3 (lower is better) Translates to: TWHVHLNLSKGG*QPYGYLHRGKV Trigger: GACTTTACCACGATGTAAGTAGCCATATGGCTGCCAACCACCTTTACTAAGATTTAAATGTACATGCCATGT 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000224359.2 |
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| 3UTR CAA 72 bp | CTGATGCAGAGGCCACGGAGGGATGTTCTTACTGGCTaGCTTCTCCTGGCTTGCTCAGCCTGCTCTCTTATA | + |
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Preference number: 4 (lower is better) Translates to: LMQRPRRDVLTG*LLLACSACSLI Trigger: TATAAGAGAGCAGGCTGAGCAAGCCAGGAGAAGCAAGCCAGTAAGAACATCCCTCCGTGGCCTCTGCATCAG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000224359.2 |
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| 3UTR CAA 72 bp | ATTCCACATTGCTGTTCATCACCAAGGAAGTCAGGATaGGAACTCAAGCAGGTCAGAAAGCAGGAGCTGATG | + |
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Preference number: 4 (lower is better) Translates to: IPHCCSSPRKSG*ELKQVRKQELM Trigger: CATCAGCTCCTGCTTTCTGACCTGCTTGAGTTCCAATCCTGACTTCCTTGGTGATGAACAGCAATGTGGAAT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000224359.2 |
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| CDS-3UTR TCA 90 bp | AACCATAAGTGTTTGTACACAATCCTGCAGATGAAGTCAGTTATTTTCCCGGTATCACGAACGAGTTCATaGTGCCCATGGCTTTGGAGG | + |
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Preference number: 4 (lower is better) Translates to: NHKCLYTILQMKSVIFPVSRTSS*CPWLWR Trigger: CCTCCAAAGCCATGGGCATCATGAACTCGTTCGTGA...TACCGGGAAAATAACTGACTTCATCTGCAGGATTGTGTACAAACACTTATGGTT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000224359.2 |
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